FFCP PHASE1:Mm9::chr2:70400189..70400200,+: Difference between revisions
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{{FFCP|EntrezGene=14415|HGNC=|MCL_coexpression_id=251|UniProt=|association_with_transcript=-19bp_to_ENSMUST00000155979_5end|description=CAGE_peak_4_at_Gad1_5end|id=chr2:70400189..70400200,+|ontology_enrichment_celltype=CL:0000117!1.27e-18!23;CL:0000337!1.27e-18!23;CL:0000540!2.91e-12!33;CL:0000047!2.91e-12!33;CL:0000031!2.91e-12!33;CL:0000404!2.91e-12!33;CL:0000221!9.98e-11!44;CL:0000133!9.98e-11!44;CL:0002319!3.26e-10!43;CL:0000393!5.03e-09!39;CL:0000211!5.03e-09!39;CL:0000055!1.70e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,8.58e-25,23;CL:0000337,8.58e-25,23;CL:0000540,1.35e-15,33;CL:0000047,1.35e-15,33;CL:0000031,1.35e-15,33;CL:0000404,1.35e-15,33;CL:0000393,2.27e-12,39;CL:0000211,2.27e-12,39;CL:0000221,1.69e-11,44;CL:0000133,1.69e-11,44;CL:0002319,9.84e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.25e-25!34;UBERON:0001049!4.79e-25!52;UBERON:0005068!4.79e-25!52;UBERON:0006241!4.79e-25!52;UBERON:0007135!4.79e-25!52;UBERON:0001017!8.50e-25!73;UBERON:0005743!8.50e-25!73;UBERON:0000073!1.97e-24!75;UBERON:0001016!1.97e-24!75;UBERON:0000033!2.61e-24!63;UBERON:0000955!7.99e-24!50;UBERON:0006238!7.99e-24!50;UBERON:0002616!8.46e-23!49;UBERON:0002346!2.63e-21!71;UBERON:0003075!2.63e-21!71;UBERON:0007284!2.63e-21!71;UBERON:0002791!3.55e-21!29;UBERON:0003528!3.55e-21!29;UBERON:0001893!3.55e-21!29;UBERON:0004121!4.36e-19!102;UBERON:0000924!4.36e-19!102;UBERON:0006601!4.36e-19!102;UBERON:0003056!1.12e-17!49;UBERON:0003080!6.37e-17!40;UBERON:0002780!5.22e-16!39;UBERON:0001890!5.22e-16!39;UBERON:0006240!5.22e-16!39;UBERON:0000956!2.35e-14!21;UBERON:0001869!2.35e-14!21;UBERON:0000203!2.35e-14!21;UBERON:0007811!1.05e-13!86;UBERON:0002619!4.60e-12!17;UBERON:0000153!1.00e-11!94;UBERON:0002021!2.29e-09!10;UBERON:0000411!2.29e-09!10;UBERON:0001950!2.29e-09!10;UBERON:0003076!6.98e-09!12;UBERON:0003057!6.98e-09!12;UBERON:0002420!4.72e-08!8;UBERON:0007245!4.72e-08!8;UBERON:0010009!4.72e-08!8;UBERON:0010011!4.72e-08!8;UBERON:0000454!4.72e-08!8;UBERON:0002298!7.37e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.39e-41,54;UBERON:0001049,6.67e-38,52;UBERON:0005068,6.67e-38,52;UBERON:0006241,6.67e-38,52;UBERON:0007135,6.67e-38,52;UBERON:0001017,1.64e-37,73;UBERON:0001016,3.28e-36,75;UBERON:0002020,1.98e-35,34;UBERON:0000955,6.73e-31,47;UBERON:0006238,6.73e-31,47;UBERON:0002346,1.11e-30,64;UBERON:0003075,1.11e-30,64;UBERON:0007284,1.11e-30,64;UBERON:0002616,3.14e-29,46;UBERON:0004121,4.67e-29,95;UBERON:0000924,4.67e-29,95;UBERON:0006601,4.67e-29,95;UBERON:0003528,7.28e-28,29;UBERON:0002791,7.28e-28,29;UBERON:0001893,7.28e-28,29;UBERON:0010371,4.10e-27,73;UBERON:0003080,5.97e-25,40;UBERON:0002780,2.08e-23,39;UBERON:0001890,2.08e-23,39;UBERON:0006240,2.08e-23,39;UBERON:0003056,1.43e-20,49;UBERON:0010314,2.23e-19,92;UBERON:0002619,2.10e-18,17;UBERON:0000956,1.63e-16,21;UBERON:0001869,1.63e-16,21;UBERON:0000203,1.63e-16,21;UBERON:0002021,2.36e-15,10;UBERON:0000411,2.36e-15,10;UBERON:0001950,2.36e-15,10;UBERON:0003076,2.65e-13,12;UBERON:0003057,2.65e-13,12;UBERON:0002420,4.92e-13,8;UBERON:0007245,4.92e-13,8;UBERON:0010009,4.92e-13,8;UBERON:0010011,4.92e-13,8;UBERON:0000454,4.92e-13,8;UBERON:0000025,6.68e-12,114;UBERON:0004111,2.90e-11,122;UBERON:0002240,4.11e-10,6;UBERON:0005174,4.11e-10,6;UBERON:0001137,4.11e-10,6;UBERON:0001948,8.70e-09,5;UBERON:0002315,8.70e-09,5;UBERON:0000369,2.39e-08,5;UBERON:0002435,2.39e-08,5;UBERON:0000204,2.39e-08,5;UBERON:0010082,2.39e-08,5;UBERON:0002950,5.21e-08,4;UBERON:0001891,5.21e-08,4;UBERON:0009616,5.21e-08,4;UBERON:0010286,5.21e-08,4;UBERON:0011216,1.01e-07,194|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,1.41957974411207,1.09691546884591,2.12194825899015,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.58328969722285,0,0,0,0,0,0,0,0,3.64169629547276,5.28990979272033,3.80298842103708,0,0,0,0,0,0.299600110518405,0,0.414758449233911,0.810035629990144,0.841299845405528,9.42648248532552,11.4851641294839,1.83736198822431,2.01275489138296,1.83843757322004,20.9220173898839,12.7687338085188,14.8998337258556,3.82470234417562,3.84248103130121,3.64639359389732,17.0301629390842,9.56696437053856,10.0846843532695,8.54422897873636,9.8236459751381,5.21918448310842,0,0.0755715601067855,0,0,0,0,0,0,0.561777680527007,0,0,0,1.12674735821344,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5668478206928,16.9651832518899,0,0,0,0,17.6752954497691,33.3975440057597,8.16753288733619,11.8200537730748,10.4843337505436,18.7009240103604,17.6842976743856,0.101839363850316,0,0,0.210441855886474,0,0,0,0.30140963567143,0.884474488967262,0.512454881139399,0.562210347358373,3.10444044886819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7202963994889,1.64647379806855,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.79358598925531,8.79087649441524,0,0,0.315508219416257,0,0,0,0,0,0,0,0,38.5585579706168,0,0,0,0,0,0.242780636154981,0,0,0.885905678642318,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.48988557036784,0.170870880797853,0,0,0,0.410082683163076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,6.44455331110048,4.01026859407578,6.70227411140382,12.3314853558716,7.55393897389701,5.40018000185445,8.10578165803597,7.25027854374727,10.8729665467882,0,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.735374033800057,0.44449345560323,0.618105171716683,0,0.252697211763798,0.760437899670719,0.188626341386076,0.749132059759059,0.448176066834085,0.631790158511746,0.952587382566147,0.347652977834566,0.578727661391115,0.412085900803307,0.883193520806384,0.342869252385415,0.354951612318675,0.715308569841963,1.45346416632329,0.376437521661322,0.507687647350059,1.46342378298218,0.263069711437843,0.543216455383447,0,0.237270036248348,0.29551344712669,0.409231043169689,1.08455788830176,0.192906610981141,1.24905288968973,1.16965804222704,0.859484216193193,0.382576664137687,0.220591419119515,0.231867835620421|short_description=p4@Gad1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14415 | |||
|HGNC= | |||
|MCL_coexpression_id=251 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-19bp_to_ENSMUST00000155979_5end | |||
|cluster_id=chr2:70400189..70400200,+ | |||
|description=CAGE_peak_4_at_Gad1_5end | |||
|id=chr2:70400189..70400200,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.27e-18!23;CL:0000337!1.27e-18!23;CL:0000540!2.91e-12!33;CL:0000047!2.91e-12!33;CL:0000031!2.91e-12!33;CL:0000404!2.91e-12!33;CL:0000221!9.98e-11!44;CL:0000133!9.98e-11!44;CL:0002319!3.26e-10!43;CL:0000393!5.03e-09!39;CL:0000211!5.03e-09!39;CL:0000055!1.70e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,8.58e-25,23;CL:0000337,8.58e-25,23;CL:0000540,1.35e-15,33;CL:0000047,1.35e-15,33;CL:0000031,1.35e-15,33;CL:0000404,1.35e-15,33;CL:0000393,2.27e-12,39;CL:0000211,2.27e-12,39;CL:0000221,1.69e-11,44;CL:0000133,1.69e-11,44;CL:0002319,9.84e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.25e-25!34;UBERON:0001049!4.79e-25!52;UBERON:0005068!4.79e-25!52;UBERON:0006241!4.79e-25!52;UBERON:0007135!4.79e-25!52;UBERON:0001017!8.50e-25!73;UBERON:0005743!8.50e-25!73;UBERON:0000073!1.97e-24!75;UBERON:0001016!1.97e-24!75;UBERON:0000033!2.61e-24!63;UBERON:0000955!7.99e-24!50;UBERON:0006238!7.99e-24!50;UBERON:0002616!8.46e-23!49;UBERON:0002346!2.63e-21!71;UBERON:0003075!2.63e-21!71;UBERON:0007284!2.63e-21!71;UBERON:0002791!3.55e-21!29;UBERON:0003528!3.55e-21!29;UBERON:0001893!3.55e-21!29;UBERON:0004121!4.36e-19!102;UBERON:0000924!4.36e-19!102;UBERON:0006601!4.36e-19!102;UBERON:0003056!1.12e-17!49;UBERON:0003080!6.37e-17!40;UBERON:0002780!5.22e-16!39;UBERON:0001890!5.22e-16!39;UBERON:0006240!5.22e-16!39;UBERON:0000956!2.35e-14!21;UBERON:0001869!2.35e-14!21;UBERON:0000203!2.35e-14!21;UBERON:0007811!1.05e-13!86;UBERON:0002619!4.60e-12!17;UBERON:0000153!1.00e-11!94;UBERON:0002021!2.29e-09!10;UBERON:0000411!2.29e-09!10;UBERON:0001950!2.29e-09!10;UBERON:0003076!6.98e-09!12;UBERON:0003057!6.98e-09!12;UBERON:0002420!4.72e-08!8;UBERON:0007245!4.72e-08!8;UBERON:0010009!4.72e-08!8;UBERON:0010011!4.72e-08!8;UBERON:0000454!4.72e-08!8;UBERON:0002298!7.37e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.39e-41,54;UBERON:0001049,6.67e-38,52;UBERON:0005068,6.67e-38,52;UBERON:0006241,6.67e-38,52;UBERON:0007135,6.67e-38,52;UBERON:0001017,1.64e-37,73;UBERON:0001016,3.28e-36,75;UBERON:0002020,1.98e-35,34;UBERON:0000955,6.73e-31,47;UBERON:0006238,6.73e-31,47;UBERON:0002346,1.11e-30,64;UBERON:0003075,1.11e-30,64;UBERON:0007284,1.11e-30,64;UBERON:0002616,3.14e-29,46;UBERON:0004121,4.67e-29,95;UBERON:0000924,4.67e-29,95;UBERON:0006601,4.67e-29,95;UBERON:0003528,7.28e-28,29;UBERON:0002791,7.28e-28,29;UBERON:0001893,7.28e-28,29;UBERON:0010371,4.10e-27,73;UBERON:0003080,5.97e-25,40;UBERON:0002780,2.08e-23,39;UBERON:0001890,2.08e-23,39;UBERON:0006240,2.08e-23,39;UBERON:0003056,1.43e-20,49;UBERON:0010314,2.23e-19,92;UBERON:0002619,2.10e-18,17;UBERON:0000956,1.63e-16,21;UBERON:0001869,1.63e-16,21;UBERON:0000203,1.63e-16,21;UBERON:0002021,2.36e-15,10;UBERON:0000411,2.36e-15,10;UBERON:0001950,2.36e-15,10;UBERON:0003076,2.65e-13,12;UBERON:0003057,2.65e-13,12;UBERON:0002420,4.92e-13,8;UBERON:0007245,4.92e-13,8;UBERON:0010009,4.92e-13,8;UBERON:0010011,4.92e-13,8;UBERON:0000454,4.92e-13,8;UBERON:0000025,6.68e-12,114;UBERON:0004111,2.90e-11,122;UBERON:0002240,4.11e-10,6;UBERON:0005174,4.11e-10,6;UBERON:0001137,4.11e-10,6;UBERON:0001948,8.70e-09,5;UBERON:0002315,8.70e-09,5;UBERON:0000369,2.39e-08,5;UBERON:0002435,2.39e-08,5;UBERON:0000204,2.39e-08,5;UBERON:0010082,2.39e-08,5;UBERON:0002950,5.21e-08,4;UBERON:0001891,5.21e-08,4;UBERON:0009616,5.21e-08,4;UBERON:0010286,5.21e-08,4;UBERON:0011216,1.01e-07,194 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,1.41957974411207,1.09691546884591,2.12194825899015,2.63634199468316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0.58328969722285,0,0,0,0,0,0,0,0,3.64169629547276,5.28990979272033,3.80298842103708,0,0,0,0,0,0.299600110518405,0,0.414758449233911,0.810035629990144,0.841299845405528,9.42648248532552,11.4851641294839,1.83736198822431,2.01275489138296,1.83843757322004,20.9220173898839,12.7687338085188,14.8998337258556,3.82470234417562,3.84248103130121,3.64639359389732,17.0301629390842,9.56696437053856,10.0846843532695,8.54422897873636,9.8236459751381,5.21918448310842,0,0.0755715601067855,0,0,0,0,0,0,0.561777680527007,0,0,0,1.12674735821344,0,0,0,0,0,0,0.22836775943812,0.258937883647172,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5668478206928,16.9651832518899,0,0,0,0,17.6752954497691,33.3975440057597,8.16753288733619,11.8200537730748,10.4843337505436,18.7009240103604,17.6842976743856,0.101839363850316,0,0,0.210441855886474,0,0,0,0.30140963567143,0.884474488967262,0.512454881139399,0.562210347358373,3.10444044886819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7202963994889,1.64647379806855,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.79358598925531,8.79087649441524,0,0,0.315508219416257,0,0,0,0,0,0,0,0,38.5585579706168,0,0,0,0,0,0.242780636154981,0,0,0.885905678642318,0,0,0.363533729477506,0,0.316036757935816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.48988557036784,0.170870880797853,0,0,0,0.410082683163076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288030006257865,0,0.202725215290164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.21227026878773,6.44455331110048,4.01026859407578,6.70227411140382,12.3314853558716,7.55393897389701,5.40018000185445,8.10578165803597,7.25027854374727,10.8729665467882,0,0.399024873401031,0.170733605754134,0.243106717068294,0.209613162627982,0.735374033800057,0.44449345560323,0.618105171716683,0,0.252697211763798,0.760437899670719,0.188626341386076,0.749132059759059,0.448176066834085,0.631790158511746,0.952587382566147,0.347652977834566,0.578727661391115,0.412085900803307,0.883193520806384,0.342869252385415,0.354951612318675,0.715308569841963,1.45346416632329,0.376437521661322,0.507687647350059,1.46342378298218,0.263069711437843,0.543216455383447,0,0.237270036248348,0.29551344712669,0.409231043169689,1.08455788830176,0.192906610981141,1.24905288968973,1.16965804222704,0.859484216193193,0.382576664137687,0.220591419119515,0.231867835620421 | |||
|short_description=p4@Gad1 | |||
}} |
Latest revision as of 22:01, 26 September 2015
Short description: | p4@Gad1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gad1_5end |
Coexpression cluster: | MCL_coexpression_mm9:251 |
Association with transcript: | -19bp_to_ENSMUST00000155979_5end |
EntrezGene: | Gad1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 8.58e-25 | 23 |
neuroblast (sensu Vertebrata) | 8.58e-25 | 23 |
neuron | 1.35e-15 | 33 |
neuronal stem cell | 1.35e-15 | 33 |
neuroblast | 1.35e-15 | 33 |
electrically signaling cell | 1.35e-15 | 33 |
electrically responsive cell | 2.27e-12 | 39 |
electrically active cell | 2.27e-12 | 39 |
ectodermal cell | 1.69e-11 | 44 |
neurectodermal cell | 1.69e-11 | 44 |
neural cell | 9.84e-11 | 43 |