FFCP PHASE1:Mm9::chr17:78907454..78907473,+: Difference between revisions
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{{FFCP|EntrezGene=74199|HGNC=|UniProt=Q8VHI5|association_with_transcript=-6bp_to_ENSMUST00000024880_5end|description=CAGE_peak_2_at_Vit_5end|id=chr17:78907454..78907473,+|ontology_enrichment_celltype=CL:0000117!6.30e-10!23;CL:0000337!6.30e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-15,23;CL:0000337,2.70e-15,23;CL:0000393,5.89e-11,39;CL:0000211,5.89e-11,39;CL:0000540,3.31e-09,33;CL:0000047,3.31e-09,33;CL:0000031,3.31e-09,33;CL:0000404,3.31e-09,33;CL:0002319,6.16e-09,43;CL:0000221,1.30e-08,44;CL:0000133,1.30e-08,44;CL:0002321,2.53e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.01e-12!63;UBERON:0002346!5.67e-12!71;UBERON:0003075!5.67e-12!71;UBERON:0007284!5.67e-12!71;UBERON:0004121!7.32e-12!102;UBERON:0000924!7.32e-12!102;UBERON:0006601!7.32e-12!102;UBERON:0003056!2.70e-10!49;UBERON:0001444!5.43e-09!11;UBERON:0000020!5.91e-09!12;UBERON:0001032!5.91e-09!12;UBERON:0004456!5.91e-09!12;UBERON:0001049!1.74e-08!52;UBERON:0005068!1.74e-08!52;UBERON:0006241!1.74e-08!52;UBERON:0007135!1.74e-08!52;UBERON:0000970!2.50e-08!9;UBERON:0000019!2.50e-08!9;UBERON:0000047!2.50e-08!9;UBERON:0004088!2.50e-08!9;UBERON:0002104!2.50e-08!9;UBERON:0001456!2.50e-08!9;UBERON:0003072!2.50e-08!9;UBERON:0003071!2.50e-08!9;UBERON:0004128!2.50e-08!9;UBERON:0007811!3.40e-07!86;UBERON:0005085!4.63e-07!13;UBERON:0002616!6.81e-07!49;UBERON:0002020!7.91e-07!34;UBERON:0000153!9.28e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.98e-17,64;UBERON:0003075,1.98e-17,64;UBERON:0007284,1.98e-17,64;UBERON:0010371,3.43e-15,73;UBERON:0000970,4.58e-15,9;UBERON:0000019,4.58e-15,9;UBERON:0000047,4.58e-15,9;UBERON:0010312,4.58e-15,9;UBERON:0004088,4.58e-15,9;UBERON:0002104,4.58e-15,9;UBERON:0001456,4.58e-15,9;UBERON:0003072,4.58e-15,9;UBERON:0004128,4.58e-15,9;UBERON:0003071,4.58e-15,9;UBERON:0001444,1.75e-14,11;UBERON:0004121,8.60e-14,95;UBERON:0000924,8.60e-14,95;UBERON:0006601,8.60e-14,95;UBERON:0003056,1.67e-13,49;UBERON:0000020,4.89e-13,12;UBERON:0001032,4.89e-13,12;UBERON:0004456,4.89e-13,12;UBERON:0000033,8.13e-12,13;UBERON:0010314,9.00e-12,92;UBERON:0002020,2.15e-10,34;UBERON:0000073,8.79e-10,54;UBERON:0005085,1.14e-09,13;UBERON:0001049,1.40e-09,52;UBERON:0005068,1.40e-09,52;UBERON:0006241,1.40e-09,52;UBERON:0007135,1.40e-09,52;UBERON:0002240,6.07e-08,6;UBERON:0005174,6.07e-08,6;UBERON:0001137,6.07e-08,6;UBERON:0001017,9.45e-08,73;UBERON:0000947,2.07e-07,4;UBERON:0001637,2.07e-07,4;UBERON:0004573,2.07e-07,4;UBERON:0003509,2.07e-07,4;UBERON:0004571,2.07e-07,4;UBERON:0010191,2.07e-07,4;UBERON:0004572,2.07e-07,4;UBERON:0001016,2.32e-07,75;UBERON:0001948,9.10e-07,5;UBERON:0002315,9.10e-07,5|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0717454380462,7.70464677268311,7.70896359079063,0,2.39827672018491,1.75748946187577,0.777719596297134,1.1198913730029,0,0,0,0,0.771778308107841,0.573066879877513,0,1.41621522601718,0.528990979272033,0,0,0,0,0,0,0,0.384218305321555,1.8664130215526,1.35005938331691,2.3135745748652,1.42825492201902,1.32521124570968,2.20483438586917,2.68367318851062,0,1.10115880999389,1.27687338085188,0.614426133024974,1.45074916503213,1.37231465403614,2.6045668527838,0.837548997004143,1.12552522006336,1.22238598221448,1.17851434189467,1.42371680799103,2.05039390407831,0.227178579999552,0,0,0,0,0,0,0,0.702222100658759,0.340860645156116,0,0.70667914902068,0.985903938436763,10.2661181931454,5.09610479413291,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0.461230994512117,0.150722640552623,1.17588707135705,0.125666591329675,0.494389935468748,2.89198713839823,0,0.323533699894818,1.10420759230197,1.93950101254089,0,0.292780797011547,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,2.51308704225729,0,0.255715457330331,1.66230435647648,0.811206315338788,0.509196819251581,2.48813941220186,1.0108910337347,3.15662783829711,6.37590170517248,6.43725892413724,7.74267158163002,9.19299388797862,14.4917743192328,11.7864622662062,9.27647073141315,10.0894314588216,0,0,0.175951124163949,0.219195732427575,0,0.696504333044333,2.67516777330327,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0.656669856316381,0.405344047729279,0.877199924551994,0.439100230582101,1.07365135008297,0.420579897128254,1.64647379806855,0,0,0,0,0,0,0,0,0,0.329397909448022,0.251335208800269,0.397912944082302,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.472905432318573,0,0,0.327726629431476,0.345369963731791,0.144649058581512,0,0,0,0.275936746304732,0.481651769963376,1.05490517932983,0,1.26235463602186,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.178065603667255,0.325773918707152,1.64970122972535,0,0,0,0,0.295301892880773,0.614870295887855,0.516856586336442,0,1.42598951353889,0.632073515871632,0,0,0,1.98067203434441,0.129358683782755,0,0,0.535106452806212,0.493647061806363,0.608929898229199,0,0,1.10264199027481,1.31909002353184,0.322928853391811,0.482503399425247,0.358117032009409,0.492422699235184,0,1.8542530201051,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0.165306911450672,0.26175594198403,0.648074866458964,0.621339313086926,0,0,0,0,0,0,0.234714477291508,1.17183946359555,0.314578033277133,0,1.15212002503146,0.316011120628178,0,0,0,0,0.39736270956253,0.120195449519969,0.147689527174577,0,0,0,0,0,0,1.81384306892169,0,0,0,0.965947970160952,0.563047426353546,1.09890974560359,0.428736758158132,0.501572104035363,0,0,0,0.343706364687375,0,0.755393897389701,1.35004500046361,0,0,0,0.31136204275253,0.798049746802062,1.02440163452481,0.729320151204882,0.419226325255965,0.183843508450014,0.44449345560323,0.824140228955577,0,0.758091635291392,0.25347929989024,0.377252682772152,0.561849044819294,0.960377286073039,0.574354689556133,0,0.115884325944855,0.38581844092741,0,0.735994600671987,0,1.06485483695602,0.476872379894642,0.726732083161643,0.564656282491984,0.930760686808441,0.914639864363863,1.05227884575137,0.271608227691724,1.12228454331548,0.474540072496697,0.689531376628944,0,1.39443157067369,0.192906610981141,0.999242311751784,0.467863216890817,0.859484216193193,0.765153328275374,1.54413993383661,1.85494268496337|short_description=p2@Vit}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74199 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q8VHI5 | |||
|association_with_transcript=-6bp_to_ENSMUST00000024880_5end | |||
|cluster_id=chr17:78907454..78907473,+ | |||
|description=CAGE_peak_2_at_Vit_5end | |||
|id=chr17:78907454..78907473,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.30e-10!23;CL:0000337!6.30e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.70e-15,23;CL:0000337,2.70e-15,23;CL:0000393,5.89e-11,39;CL:0000211,5.89e-11,39;CL:0000540,3.31e-09,33;CL:0000047,3.31e-09,33;CL:0000031,3.31e-09,33;CL:0000404,3.31e-09,33;CL:0002319,6.16e-09,43;CL:0000221,1.30e-08,44;CL:0000133,1.30e-08,44;CL:0002321,2.53e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.01e-12!63;UBERON:0002346!5.67e-12!71;UBERON:0003075!5.67e-12!71;UBERON:0007284!5.67e-12!71;UBERON:0004121!7.32e-12!102;UBERON:0000924!7.32e-12!102;UBERON:0006601!7.32e-12!102;UBERON:0003056!2.70e-10!49;UBERON:0001444!5.43e-09!11;UBERON:0000020!5.91e-09!12;UBERON:0001032!5.91e-09!12;UBERON:0004456!5.91e-09!12;UBERON:0001049!1.74e-08!52;UBERON:0005068!1.74e-08!52;UBERON:0006241!1.74e-08!52;UBERON:0007135!1.74e-08!52;UBERON:0000970!2.50e-08!9;UBERON:0000019!2.50e-08!9;UBERON:0000047!2.50e-08!9;UBERON:0004088!2.50e-08!9;UBERON:0002104!2.50e-08!9;UBERON:0001456!2.50e-08!9;UBERON:0003072!2.50e-08!9;UBERON:0003071!2.50e-08!9;UBERON:0004128!2.50e-08!9;UBERON:0007811!3.40e-07!86;UBERON:0005085!4.63e-07!13;UBERON:0002616!6.81e-07!49;UBERON:0002020!7.91e-07!34;UBERON:0000153!9.28e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.98e-17,64;UBERON:0003075,1.98e-17,64;UBERON:0007284,1.98e-17,64;UBERON:0010371,3.43e-15,73;UBERON:0000970,4.58e-15,9;UBERON:0000019,4.58e-15,9;UBERON:0000047,4.58e-15,9;UBERON:0010312,4.58e-15,9;UBERON:0004088,4.58e-15,9;UBERON:0002104,4.58e-15,9;UBERON:0001456,4.58e-15,9;UBERON:0003072,4.58e-15,9;UBERON:0004128,4.58e-15,9;UBERON:0003071,4.58e-15,9;UBERON:0001444,1.75e-14,11;UBERON:0004121,8.60e-14,95;UBERON:0000924,8.60e-14,95;UBERON:0006601,8.60e-14,95;UBERON:0003056,1.67e-13,49;UBERON:0000020,4.89e-13,12;UBERON:0001032,4.89e-13,12;UBERON:0004456,4.89e-13,12;UBERON:0000033,8.13e-12,13;UBERON:0010314,9.00e-12,92;UBERON:0002020,2.15e-10,34;UBERON:0000073,8.79e-10,54;UBERON:0005085,1.14e-09,13;UBERON:0001049,1.40e-09,52;UBERON:0005068,1.40e-09,52;UBERON:0006241,1.40e-09,52;UBERON:0007135,1.40e-09,52;UBERON:0002240,6.07e-08,6;UBERON:0005174,6.07e-08,6;UBERON:0001137,6.07e-08,6;UBERON:0001017,9.45e-08,73;UBERON:0000947,2.07e-07,4;UBERON:0001637,2.07e-07,4;UBERON:0004573,2.07e-07,4;UBERON:0003509,2.07e-07,4;UBERON:0004571,2.07e-07,4;UBERON:0010191,2.07e-07,4;UBERON:0004572,2.07e-07,4;UBERON:0001016,2.32e-07,75;UBERON:0001948,9.10e-07,5;UBERON:0002315,9.10e-07,5 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0.0992909512008853,0.261199789138935,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0717454380462,7.70464677268311,7.70896359079063,0,2.39827672018491,1.75748946187577,0.777719596297134,1.1198913730029,0,0,0,0,0.771778308107841,0.573066879877513,0,1.41621522601718,0.528990979272033,0,0,0,0,0,0,0,0.384218305321555,1.8664130215526,1.35005938331691,2.3135745748652,1.42825492201902,1.32521124570968,2.20483438586917,2.68367318851062,0,1.10115880999389,1.27687338085188,0.614426133024974,1.45074916503213,1.37231465403614,2.6045668527838,0.837548997004143,1.12552522006336,1.22238598221448,1.17851434189467,1.42371680799103,2.05039390407831,0.227178579999552,0,0,0,0,0,0,0,0.702222100658759,0.340860645156116,0,0.70667914902068,0.985903938436763,10.2661181931454,5.09610479413291,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0.461230994512117,0.150722640552623,1.17588707135705,0.125666591329675,0.494389935468748,2.89198713839823,0,0.323533699894818,1.10420759230197,1.93950101254089,0,0.292780797011547,0.209446706813455,0,0,0,0,0.599162557619291,0.915001205637253,2.51308704225729,0,0.255715457330331,1.66230435647648,0.811206315338788,0.509196819251581,2.48813941220186,1.0108910337347,3.15662783829711,6.37590170517248,6.43725892413724,7.74267158163002,9.19299388797862,14.4917743192328,11.7864622662062,9.27647073141315,10.0894314588216,0,0,0.175951124163949,0.219195732427575,0,0.696504333044333,2.67516777330327,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0.268273401399619,0.116765342367169,0.16455984991348,0.656669856316381,0.405344047729279,0.877199924551994,0.439100230582101,1.07365135008297,0.420579897128254,1.64647379806855,0,0,0,0,0,0,0,0,0,0.329397909448022,0.251335208800269,0.397912944082302,0.19496408711912,0,0.216138049874694,0,0,0,0,0,0.193952487167626,0.140271639780637,0.126473074248515,0,0,0,0,0,0,0,0,0,0.25462585178142,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0.195133647857799,0.472905432318573,0,0,0.327726629431476,0.345369963731791,0.144649058581512,0,0,0,0.275936746304732,0.481651769963376,1.05490517932983,0,1.26235463602186,0,0,0,0,0,0,0,0,0,0,0.567760340833074,0.178065603667255,0.325773918707152,1.64970122972535,0,0,0,0,0.295301892880773,0.614870295887855,0.516856586336442,0,1.42598951353889,0.632073515871632,0,0,0,1.98067203434441,0.129358683782755,0,0,0.535106452806212,0.493647061806363,0.608929898229199,0,0,1.10264199027481,1.31909002353184,0.322928853391811,0.482503399425247,0.358117032009409,0.492422699235184,0,1.8542530201051,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0,0,0,0,0.165306911450672,0.26175594198403,0.648074866458964,0.621339313086926,0,0,0,0,0,0,0.234714477291508,1.17183946359555,0.314578033277133,0,1.15212002503146,0.316011120628178,0,0,0,0,0.39736270956253,0.120195449519969,0.147689527174577,0,0,0,0,0,0,1.81384306892169,0,0,0,0.965947970160952,0.563047426353546,1.09890974560359,0.428736758158132,0.501572104035363,0,0,0,0.343706364687375,0,0.755393897389701,1.35004500046361,0,0,0,0.31136204275253,0.798049746802062,1.02440163452481,0.729320151204882,0.419226325255965,0.183843508450014,0.44449345560323,0.824140228955577,0,0.758091635291392,0.25347929989024,0.377252682772152,0.561849044819294,0.960377286073039,0.574354689556133,0,0.115884325944855,0.38581844092741,0,0.735994600671987,0,1.06485483695602,0.476872379894642,0.726732083161643,0.564656282491984,0.930760686808441,0.914639864363863,1.05227884575137,0.271608227691724,1.12228454331548,0.474540072496697,0.689531376628944,0,1.39443157067369,0.192906610981141,0.999242311751784,0.467863216890817,0.859484216193193,0.765153328275374,1.54413993383661,1.85494268496337 | |||
|short_description=p2@Vit | |||
}} |
Latest revision as of 21:35, 26 September 2015
Short description: | p2@Vit |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vit_5end |
Coexpression cluster: | NA |
Association with transcript: | -6bp_to_ENSMUST00000024880_5end |
EntrezGene: | Vit |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.70e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.70e-15 | 23 |
electrically responsive cell | 5.89e-11 | 39 |
electrically active cell | 5.89e-11 | 39 |
neuron | 3.31e-09 | 33 |
neuronal stem cell | 3.31e-09 | 33 |
neuroblast | 3.31e-09 | 33 |
electrically signaling cell | 3.31e-09 | 33 |
neural cell | 6.16e-09 | 43 |
ectodermal cell | 1.30e-08 | 44 |
neurectodermal cell | 1.30e-08 | 44 |
embryonic cell | 2.53e-07 | 70 |