FFCP PHASE1:Mm9::chr17:74858563..74858573,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=268973 | |EntrezGene=268973 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UP24 | |UniProt=Q3UP24 | ||
|association_with_transcript=-115bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end | |association_with_transcript=-115bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end | ||
|cluster_id=chr17:74858563..74858573,- | |||
|description=CAGE_peak_4_at_Nlrc4_5end | |description=CAGE_peak_4_at_Nlrc4_5end | ||
|id=chr17:74858563..74858573,- | |id=chr17:74858563..74858573,- | ||
|ontology_enrichment_celltype=CL:0000239!3.92e-09!6;CL:0000677!3.92e-09!6;CL:0000212!3.92e-09!6;CL:0000584!3.92e-09!6;CL:0000075!1.16e-07!7;CL:0002563!1.54e-07!9;CL:0002251!1.54e-07!9 | |ontology_enrichment_celltype=CL:0000239!3.92e-09!6;CL:0000677!3.92e-09!6;CL:0000212!3.92e-09!6;CL:0000584!3.92e-09!6;CL:0000075!1.16e-07!7;CL:0002563!1.54e-07!9;CL:0002251!1.54e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000682,5.51e-12,3;CL:0000239,1.56e-11,6;CL:0000677,1.56e-11,6;CL:0000584,1.56e-11,6;CL:0000075,6.68e-10,7;CL:0002563,1.02e-07,9;CL:0002251,1.02e-07,9;CL:0000066,3.64e-07,25 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.17e-17!43;UBERON:0005409!1.29e-17!59;UBERON:0000344!4.41e-15!15;UBERON:0001242!1.34e-12!13;UBERON:0000060!1.34e-12!13;UBERON:0001262!1.34e-12!13;UBERON:0004786!1.34e-12!13;UBERON:0004923!2.76e-09!24;UBERON:0003350!1.54e-07!9;UBERON:0004808!1.54e-07!9;UBERON:0001277!1.54e-07!9;UBERON:0004119!3.05e-07!130;UBERON:0000925!3.05e-07!130;UBERON:0006595!3.05e-07!130;UBERON:0001007!6.31e-07!128;UBERON:0001555!6.31e-07!128;UBERON:0007026!6.31e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.52e-40,31;UBERON:0005409,1.31e-25,47;UBERON:0000344,5.81e-17,15;UBERON:0001242,2.95e-15,13;UBERON:0001262,2.95e-15,13;UBERON:0004786,2.95e-15,13;UBERON:0004923,3.45e-10,24;UBERON:0002108,6.45e-10,4;UBERON:0001007,9.17e-10,116;UBERON:0001555,9.17e-10,116;UBERON:0007026,9.17e-10,116;UBERON:0004119,1.53e-09,118;UBERON:0000925,1.53e-09,118;UBERON:0006595,1.53e-09,118;UBERON:0004921,9.60e-09,114;UBERON:0003350,1.02e-07,9;UBERON:0004808,1.02e-07,9;UBERON:0001277,1.02e-07,9 | |||
|phase1_expression=0,4.18770489167233,2.27499619694768,6.95667686005709,5.50985302940982,0.16787927191189,0.934450562382103,0,0.140788722151667,0,0,0,0,0.0874204024189974,0,0,0,0,0.137114433605739,0,0,0,0,2.87986361028132,0.91763712426868,2.29692785646008,1.7230479846363,1.72376986148711,3.23039813075836,4.03248207615889,0.665191531965914,0,0,0,0,0.332469290716985,0,0,0,0.523523743973798,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0.148442139064825,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,4.85368404896324,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8688452342709,2.90895623329899,0,0,0.128867461322093,0.403367049246685,0.22237804384487,2.09248188723815,6.16887780007865,2.30578536613615,1.50801125280162,0.795825888164603,1.9496408711912,2.69645822596266,5.18731319699266,4.77939055810481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0.16488625294148,0,0.0603129249281559,0,0,4.08073171281791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0.655087691238533,0.134864346384821,0.247960367176008,0,0.777689839750757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0 | |phase1_expression=0,4.18770489167233,2.27499619694768,6.95667686005709,5.50985302940982,0.16787927191189,0.934450562382103,0,0.140788722151667,0,0,0,0,0.0874204024189974,0,0,0,0,0.137114433605739,0,0,0,0,2.87986361028132,0.91763712426868,2.29692785646008,1.7230479846363,1.72376986148711,3.23039813075836,4.03248207615889,0.665191531965914,0,0,0,0,0.332469290716985,0,0,0,0.523523743973798,0,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0.148442139064825,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,4.85368404896324,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8688452342709,2.90895623329899,0,0,0.128867461322093,0.403367049246685,0.22237804384487,2.09248188723815,6.16887780007865,2.30578536613615,1.50801125280162,0.795825888164603,1.9496408711912,2.69645822596266,5.18731319699266,4.77939055810481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202860121388503,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0.21183207086382,0,0.16488625294148,0,0.0603129249281559,0,0,4.08073171281791,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,0.655087691238533,0.134864346384821,0.247960367176008,0,0.777689839750757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36630324853453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0.222246727801615,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.0574354689556133,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0,0,0,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0 | ||
|short_description=p4@Nlrc4 | |short_description=p4@Nlrc4 | ||
}} | }} |
Latest revision as of 21:18, 26 September 2015
Short description: | p4@Nlrc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Nlrc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -115bp_to_ENSMUST00000052124, NM_001033367, uc008doc.1_5end |
EntrezGene: | Nlrc4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 5.51e-12 | 3 |
brush border epithelial cell | 1.56e-11 | 6 |
gut absorptive cell | 1.56e-11 | 6 |
enterocyte | 1.56e-11 | 6 |
columnar/cuboidal epithelial cell | 6.68e-10 | 7 |
intestinal epithelial cell | 1.02e-07 | 9 |
epithelial cell of alimentary canal | 1.02e-07 | 9 |
epithelial cell | 3.64e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.52e-40 | 31 |
gastrointestinal system | 1.31e-25 | 47 |
mucosa | 5.81e-17 | 15 |
intestinal mucosa | 2.95e-15 | 13 |
wall of intestine | 2.95e-15 | 13 |
gastrointestinal system mucosa | 2.95e-15 | 13 |
organ component layer | 3.45e-10 | 24 |
small intestine | 6.45e-10 | 4 |
digestive system | 9.17e-10 | 116 |
digestive tract | 9.17e-10 | 116 |
primitive gut | 9.17e-10 | 116 |
endoderm-derived structure | 1.53e-09 | 118 |
endoderm | 1.53e-09 | 118 |
presumptive endoderm | 1.53e-09 | 118 |
subdivision of digestive tract | 9.60e-09 | 114 |
epithelium of mucosa | 1.02e-07 | 9 |
gastrointestinal system epithelium | 1.02e-07 | 9 |
intestinal epithelium | 1.02e-07 | 9 |