FFCP PHASE1:Mm9::chr17:74858529..74858547,-: Difference between revisions
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{{FFCP|EntrezGene=268973|HGNC=|MCL_coexpression_id=12|UniProt=Q3UP24|association_with_transcript=-81bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end|description=CAGE_peak_3_at_Nlrc4_5end|id=chr17:74858529..74858547,-|ontology_enrichment_celltype=CL:0002563!8.67e-11!9;CL:0002251!8.67e-11!9;CL:0000239!3.65e-08!6;CL:0000677!3.65e-08!6;CL:0000212!3.65e-08!6;CL:0000584!3.65e-08!6;CL:0000075!8.34e-07!7|ontology_enrichment_celltype_v019_2=CL:0002563,1.69e-18,9;CL:0002251,1.69e-18,9;CL:0000239,1.10e-13,6;CL:0000677,1.10e-13,6;CL:0000584,1.10e-13,6;CL:0000075,1.28e-11,7;CL:0002076,2.04e-10,15;CL:0000066,2.27e-10,25;CL:0000682,1.68e-07,3;CL:0000223,2.13e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.11e-23!59;UBERON:0000160!5.31e-21!43;UBERON:0000344!1.04e-17!15;UBERON:0001242!1.80e-15!13;UBERON:0000060!1.80e-15!13;UBERON:0001262!1.80e-15!13;UBERON:0004786!1.80e-15!13;UBERON:0003350!8.67e-11!9;UBERON:0004808!8.67e-11!9;UBERON:0001277!8.67e-11!9;UBERON:0004923!3.42e-09!24;UBERON:0000485!2.29e-08!11;UBERON:0001007!1.30e-07!128;UBERON:0001555!1.30e-07!128;UBERON:0007026!1.30e-07!128;UBERON:0004119!2.62e-07!130;UBERON:0000925!2.62e-07!130;UBERON:0006595!2.62e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.18e-53,31;UBERON:0005409,2.17e-43,47;UBERON:0000344,3.00e-31,15;UBERON:0001242,4.03e-27,13;UBERON:0001262,4.03e-27,13;UBERON:0004786,4.03e-27,13;UBERON:0003350,1.69e-18,9;UBERON:0004808,1.69e-18,9;UBERON:0001277,1.69e-18,9;UBERON:0004923,3.70e-18,24;UBERON:0001007,1.18e-15,116;UBERON:0001555,1.18e-15,116;UBERON:0007026,1.18e-15,116;UBERON:0004119,2.94e-15,118;UBERON:0000925,2.94e-15,118;UBERON:0006595,2.94e-15,118;UBERON:0000485,8.00e-15,11;UBERON:0004921,1.43e-13,114;UBERON:0002108,7.57e-10,4;UBERON:0000331,1.00e-07,3;UBERON:0002116,1.00e-07,3;UBERON:0001204,1.00e-07,3;UBERON:0001168,1.00e-07,3|phase1_expression=0,17.7977457896074,16.8349718574128,27.2217790176147,19.5349334679075,1.84667199103079,2.56973904655078,0,0,0,0,0,0,0.34968160967599,0,0,0,0,0,0,0,0,0,12.4794089778857,8.71755268055246,9.18771142584032,11.1998119001359,7.75696437669201,20.5225293012884,15.8778981748756,4.21287970245079,0,0,0,1.44425809875637,2.1610503896604,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,5.36664234679582,0.258937883647172,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,9.31958806090611,0,0,19.6701932510615,0.11981512450592,0,0.254140454146129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,60.1362185030512,18.5115396664481,0,0,0.515469845288373,5.44545516483025,3.7804267453628,4.56541502670142,19.9302205848695,9.71723832871664,6.03204501120647,7.95825888164603,7.40863531052657,17.9763881730844,19.8847005884719,23.299528970761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,2.84271122485043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1973693611612,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,1.90934123603023,0,0.203319467126849,0.648032044930808,0.209088296014469,1.09181281873089,0.674321731924103,0.991841468704031,1.83229159388821,6.22151871800606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0.19318959403219,0,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44449345560323,0,0.320919209591815,1.01078884705519,0.760437899670719,0.377252682772152,0.37456602987953,0.0640251524048693,0.34461281373368,0,0.231768651889711,0.964546102318525,0,0.294397840268795,0,0,0.238436189947321,0.290692833264657,0.0941093804153306,0.761531471025089,0.182927972872773,0,0.814824683075171,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0,0.233931608445408,0.644613162144895,0,0,0|short_description=p3@Nlrc4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=268973 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UP24 | |||
|association_with_transcript=-81bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end | |||
|cluster_id=chr17:74858529..74858547,- | |||
|description=CAGE_peak_3_at_Nlrc4_5end | |||
|id=chr17:74858529..74858547,- | |||
|ontology_enrichment_celltype=CL:0002563!8.67e-11!9;CL:0002251!8.67e-11!9;CL:0000239!3.65e-08!6;CL:0000677!3.65e-08!6;CL:0000212!3.65e-08!6;CL:0000584!3.65e-08!6;CL:0000075!8.34e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.69e-18,9;CL:0002251,1.69e-18,9;CL:0000239,1.10e-13,6;CL:0000677,1.10e-13,6;CL:0000584,1.10e-13,6;CL:0000075,1.28e-11,7;CL:0002076,2.04e-10,15;CL:0000066,2.27e-10,25;CL:0000682,1.68e-07,3;CL:0000223,2.13e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.11e-23!59;UBERON:0000160!5.31e-21!43;UBERON:0000344!1.04e-17!15;UBERON:0001242!1.80e-15!13;UBERON:0000060!1.80e-15!13;UBERON:0001262!1.80e-15!13;UBERON:0004786!1.80e-15!13;UBERON:0003350!8.67e-11!9;UBERON:0004808!8.67e-11!9;UBERON:0001277!8.67e-11!9;UBERON:0004923!3.42e-09!24;UBERON:0000485!2.29e-08!11;UBERON:0001007!1.30e-07!128;UBERON:0001555!1.30e-07!128;UBERON:0007026!1.30e-07!128;UBERON:0004119!2.62e-07!130;UBERON:0000925!2.62e-07!130;UBERON:0006595!2.62e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.18e-53,31;UBERON:0005409,2.17e-43,47;UBERON:0000344,3.00e-31,15;UBERON:0001242,4.03e-27,13;UBERON:0001262,4.03e-27,13;UBERON:0004786,4.03e-27,13;UBERON:0003350,1.69e-18,9;UBERON:0004808,1.69e-18,9;UBERON:0001277,1.69e-18,9;UBERON:0004923,3.70e-18,24;UBERON:0001007,1.18e-15,116;UBERON:0001555,1.18e-15,116;UBERON:0007026,1.18e-15,116;UBERON:0004119,2.94e-15,118;UBERON:0000925,2.94e-15,118;UBERON:0006595,2.94e-15,118;UBERON:0000485,8.00e-15,11;UBERON:0004921,1.43e-13,114;UBERON:0002108,7.57e-10,4;UBERON:0000331,1.00e-07,3;UBERON:0002116,1.00e-07,3;UBERON:0001204,1.00e-07,3;UBERON:0001168,1.00e-07,3 | |||
|phase1_expression=0,17.7977457896074,16.8349718574128,27.2217790176147,19.5349334679075,1.84667199103079,2.56973904655078,0,0,0,0,0,0,0.34968160967599,0,0,0,0,0,0,0,0,0,12.4794089778857,8.71755268055246,9.18771142584032,11.1998119001359,7.75696437669201,20.5225293012884,15.8778981748756,4.21287970245079,0,0,0,1.44425809875637,2.1610503896604,1.63335485009895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,5.36664234679582,0.258937883647172,0,0,0,0,0,0,0,0,0.144599356919912,0,0,0,0,9.31958806090611,0,0,19.6701932510615,0.11981512450592,0,0.254140454146129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,60.1362185030512,18.5115396664481,0,0,0.515469845288373,5.44545516483025,3.7804267453628,4.56541502670142,19.9302205848695,9.71723832871664,6.03204501120647,7.95825888164603,7.40863531052657,17.9763881730844,19.8847005884719,23.299528970761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,2.84271122485043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.1973693611612,0.18542530201051,0,0,0,0,0,0,0,0.139951452323658,0.138199973804424,1.90934123603023,0,0.203319467126849,0.648032044930808,0.209088296014469,1.09181281873089,0.674321731924103,0.991841468704031,1.83229159388821,6.22151871800606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0,0,0,0,0,0,0.19318959403219,0,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44449345560323,0,0.320919209591815,1.01078884705519,0.760437899670719,0.377252682772152,0.37456602987953,0.0640251524048693,0.34461281373368,0,0.231768651889711,0.964546102318525,0,0.294397840268795,0,0,0.238436189947321,0.290692833264657,0.0941093804153306,0.761531471025089,0.182927972872773,0,0.814824683075171,0,0.118635018124174,0.197008964751127,0,0.154936841185966,0.385813221962283,0,0.233931608445408,0.644613162144895,0,0,0 | |||
|short_description=p3@Nlrc4 | |||
}} |
Latest revision as of 21:17, 26 September 2015
Short description: | p3@Nlrc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Nlrc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -81bp_to_ENSMUST00000052124, NM_001033367, uc008doc.1_5end |
EntrezGene: | Nlrc4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.69e-18 | 9 |
epithelial cell of alimentary canal | 1.69e-18 | 9 |
brush border epithelial cell | 1.10e-13 | 6 |
gut absorptive cell | 1.10e-13 | 6 |
enterocyte | 1.10e-13 | 6 |
columnar/cuboidal epithelial cell | 1.28e-11 | 7 |
endo-epithelial cell | 2.04e-10 | 15 |
epithelial cell | 2.27e-10 | 25 |
M cell of gut | 1.68e-07 | 3 |
endodermal cell | 2.13e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.18e-53 | 31 |
gastrointestinal system | 2.17e-43 | 47 |
mucosa | 3.00e-31 | 15 |
intestinal mucosa | 4.03e-27 | 13 |
wall of intestine | 4.03e-27 | 13 |
gastrointestinal system mucosa | 4.03e-27 | 13 |
epithelium of mucosa | 1.69e-18 | 9 |
gastrointestinal system epithelium | 1.69e-18 | 9 |
intestinal epithelium | 1.69e-18 | 9 |
organ component layer | 3.70e-18 | 24 |
digestive system | 1.18e-15 | 116 |
digestive tract | 1.18e-15 | 116 |
primitive gut | 1.18e-15 | 116 |
endoderm-derived structure | 2.94e-15 | 118 |
endoderm | 2.94e-15 | 118 |
presumptive endoderm | 2.94e-15 | 118 |
simple columnar epithelium | 8.00e-15 | 11 |
subdivision of digestive tract | 1.43e-13 | 114 |
small intestine | 7.57e-10 | 4 |
ileal mucosa | 1.00e-07 | 3 |
ileum | 1.00e-07 | 3 |
mucosa of small intestine | 1.00e-07 | 3 |
wall of small intestine | 1.00e-07 | 3 |