FFCP PHASE1:Mm9::chr7:52317115..52317126,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=65116|HGNC=|MCL_coexpression_id=2469|UniProt=D3Z0A6|association_with_transcript=-39bp_to_ENSMUST00000107832_5end|description=CAGE_peak_7_at_Prrg2_5end|id=chr7:52317115..52317126,-|ontology_enrichment_celltype=CL:0000066!1.04e-07!25;CL:0002563!3.84e-07!9;CL:0002251!3.84e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,5.07e-14,9;CL:0002251,5.07e-14,9;CL:0000239,8.44e-11,6;CL:0000677,8.44e-11,6;CL:0000584,8.44e-11,6;CL:0000066,1.73e-10,25;CL:0000223,6.06e-10,20;CL:0000075,4.03e-09,7;CL:0002076,1.17e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!3.61e-19!130;UBERON:0000925!3.61e-19!130;UBERON:0006595!3.61e-19!130;UBERON:0001007!1.95e-18!128;UBERON:0001555!1.95e-18!128;UBERON:0007026!1.95e-18!128;UBERON:0004921!2.29e-17!126;UBERON:0004185!2.29e-17!126;UBERON:0000160!1.03e-15!43;UBERON:0005409!1.55e-15!59;UBERON:0000344!5.17e-11!15;UBERON:0001242!5.69e-10!13;UBERON:0000060!5.69e-10!13;UBERON:0001262!5.69e-10!13;UBERON:0004786!5.69e-10!13;UBERON:0000481!9.08e-08!230;UBERON:0000485!1.61e-07!11;UBERON:0003350!3.84e-07!9;UBERON:0004808!3.84e-07!9;UBERON:0001277!3.84e-07!9;UBERON:0004923!5.67e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.19e-22,15;UBERON:0001242,2.53e-20,13;UBERON:0001262,2.53e-20,13;UBERON:0004786,2.53e-20,13;UBERON:0000160,2.68e-20,31;UBERON:0005409,2.64e-17,47;UBERON:0004923,1.49e-14,24;UBERON:0003350,5.07e-14,9;UBERON:0004808,5.07e-14,9;UBERON:0001277,5.07e-14,9;UBERON:0001007,2.01e-13,116;UBERON:0001555,2.01e-13,116;UBERON:0007026,2.01e-13,116;UBERON:0004119,4.99e-13,118;UBERON:0000925,4.99e-13,118;UBERON:0006595,4.99e-13,118;UBERON:0004921,5.37e-12,114;UBERON:0000485,4.03e-11,11;UBERON:0007023,4.04e-11,51;UBERON:0002108,1.89e-07,4|phase1_expression=0.480446541314382,3.48975407639361,4.09499315450582,3.32710632437513,3.50627010962443,1.00727563147134,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,1.11994695955385,1.37645568640302,1.72269589234506,0.86152399231815,2.15471232685889,4.75058548640935,1.26015064879965,1.77384408524244,0,0,0,1.1554064790051,1.32987716286794,1.02084678131185,0,0,0,0,0,0,0.125896817975577,0,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255374676170375,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,2.15881276655127,2.59910566979068,1.34408066129201,1.12355536105401,0.340860645156116,0.259786004602869,0,0.563373679106722,0,0,0,0.649473123033642,0.506719730950197,0,1.59857431606684,0,0,0,0,0,0,0,0.125666591329675,1.48316980640624,0,0,0,0.220841518460394,0,1.86391761218122,0,0.209446706813455,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0.497627882440372,1.76905930903572,1.47309299120532,0,0,0,0.30140963567143,0,0,0,0.517406741478031,0,0,0,0.43839146485515,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0.210289948564127,0,3.63460661282178,1.32225283331772,0,0,0.128867461322093,0.403367049246685,0.889512175379481,0.570676878337677,0.949058123089023,0.658795818896044,1.75934646160189,0.795825888164603,2.14460495831032,0.898819408654221,3.02593269824572,1.7922714592893,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.210407459670956,0.569128834118316,1.18088118383682,1.72698600625512,0.987177311374404,1.1858105083486,0,0,0,0.202860121388503,0.241177159752417,0,0.863088412352432,0.324270453550071,0.549122826376163,1.43768206527355,1.11642284300551,0.624075346229121,1.26289438973556,2.15276896226295,0.964887042726734,1.66277871149944,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0.238043640886014,0.390267295715598,0,0.221464689648775,0.159454768657487,0.983179888294428,0.518054945597687,0.723245292907558,0,0,0.491764273019036,0.827810238914197,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.494910368917606,3.98235415019888,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.632073515871632,1.05418608574999,1.03135543248187,1.70219802876894,0,0.129358683782755,0.214337035031592,0.709360934569094,0.178368817602071,0.493647061806363,0.304464949114599,0.469343416127421,0.63549621259146,2.20528398054962,1.48397627647332,0.645857706783622,0.542816324353403,0.477489376012546,1.14898629821543,1.7488850197791,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,0.609958401380546,0.432021363287205,0.209088296014469,0.655087691238533,0.674321731924103,1.07449492442937,2.35580347785627,1.68499465279331,2.4853572523477,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0,0,0,0,0.810900861160657,0.308132871494482,0,0.179026695667481,0,0.120195449519969,0,0,0.0762068066549998,0,0.292373642219257,0,0,0.680191150845634,0.665957860122194,0,0.167884616364078,1.54551675225752,0.375364950902364,0.549454872801795,0.428736758158132,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0.486213434136588,0,0,0,0,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.0640251524048693,0.0574354689556133,0.476293691283074,0,0,0,0.147198920134397,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0.385813221962283,0,0.233931608445408,0,0,0,0|short_description=p7@Prrg2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=65116 | |||
|HGNC= | |||
|MCL_coexpression_id=2469 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z0A6 | |||
|association_with_transcript=-39bp_to_ENSMUST00000107832_5end | |||
|cluster_id=chr7:52317115..52317126,- | |||
|description=CAGE_peak_7_at_Prrg2_5end | |||
|id=chr7:52317115..52317126,- | |||
|ontology_enrichment_celltype=CL:0000066!1.04e-07!25;CL:0002563!3.84e-07!9;CL:0002251!3.84e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,5.07e-14,9;CL:0002251,5.07e-14,9;CL:0000239,8.44e-11,6;CL:0000677,8.44e-11,6;CL:0000584,8.44e-11,6;CL:0000066,1.73e-10,25;CL:0000223,6.06e-10,20;CL:0000075,4.03e-09,7;CL:0002076,1.17e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.61e-19!130;UBERON:0000925!3.61e-19!130;UBERON:0006595!3.61e-19!130;UBERON:0001007!1.95e-18!128;UBERON:0001555!1.95e-18!128;UBERON:0007026!1.95e-18!128;UBERON:0004921!2.29e-17!126;UBERON:0004185!2.29e-17!126;UBERON:0000160!1.03e-15!43;UBERON:0005409!1.55e-15!59;UBERON:0000344!5.17e-11!15;UBERON:0001242!5.69e-10!13;UBERON:0000060!5.69e-10!13;UBERON:0001262!5.69e-10!13;UBERON:0004786!5.69e-10!13;UBERON:0000481!9.08e-08!230;UBERON:0000485!1.61e-07!11;UBERON:0003350!3.84e-07!9;UBERON:0004808!3.84e-07!9;UBERON:0001277!3.84e-07!9;UBERON:0004923!5.67e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.19e-22,15;UBERON:0001242,2.53e-20,13;UBERON:0001262,2.53e-20,13;UBERON:0004786,2.53e-20,13;UBERON:0000160,2.68e-20,31;UBERON:0005409,2.64e-17,47;UBERON:0004923,1.49e-14,24;UBERON:0003350,5.07e-14,9;UBERON:0004808,5.07e-14,9;UBERON:0001277,5.07e-14,9;UBERON:0001007,2.01e-13,116;UBERON:0001555,2.01e-13,116;UBERON:0007026,2.01e-13,116;UBERON:0004119,4.99e-13,118;UBERON:0000925,4.99e-13,118;UBERON:0006595,4.99e-13,118;UBERON:0004921,5.37e-12,114;UBERON:0000485,4.03e-11,11;UBERON:0007023,4.04e-11,51;UBERON:0002108,1.89e-07,4 | |||
|phase1_expression=0.480446541314382,3.48975407639361,4.09499315450582,3.32710632437513,3.50627010962443,1.00727563147134,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680346321208558,0,0,1.11994695955385,1.37645568640302,1.72269589234506,0.86152399231815,2.15471232685889,4.75058548640935,1.26015064879965,1.77384408524244,0,0,0,1.1554064790051,1.32987716286794,1.02084678131185,0,0,0,0,0,0,0.125896817975577,0,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255374676170375,0.153606533256243,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0.860423876981386,0,2.15881276655127,2.59910566979068,1.34408066129201,1.12355536105401,0.340860645156116,0.259786004602869,0,0.563373679106722,0,0,0,0.649473123033642,0.506719730950197,0,1.59857431606684,0,0,0,0,0,0,0,0.125666591329675,1.48316980640624,0,0,0,0.220841518460394,0,1.86391761218122,0,0.209446706813455,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0.497627882440372,1.76905930903572,1.47309299120532,0,0,0,0.30140963567143,0,0,0,0.517406741478031,0,0,0,0.43839146485515,0.278047249225598,0,0.411564272815887,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0,0.210289948564127,0,3.63460661282178,1.32225283331772,0,0,0.128867461322093,0.403367049246685,0.889512175379481,0.570676878337677,0.949058123089023,0.658795818896044,1.75934646160189,0.795825888164603,2.14460495831032,0.898819408654221,3.02593269824572,1.7922714592893,0.379335801906163,0.342745537829186,0,0.203651327845314,0.193952487167626,0.210407459670956,0.569128834118316,1.18088118383682,1.72698600625512,0.987177311374404,1.1858105083486,0,0,0,0.202860121388503,0.241177159752417,0,0.863088412352432,0.324270453550071,0.549122826376163,1.43768206527355,1.11642284300551,0.624075346229121,1.26289438973556,2.15276896226295,0.964887042726734,1.66277871149944,0.189491411770485,0,0.169745085775188,0.234690248288502,0,0.238043640886014,0.390267295715598,0,0.221464689648775,0.159454768657487,0.983179888294428,0.518054945597687,0.723245292907558,0,0,0.491764273019036,0.827810238914197,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0.494910368917606,3.98235415019888,0.242780636154981,0,0.377210159511796,0,0.307435147943927,0.258428293168221,0,0.356497378384721,0.632073515871632,1.05418608574999,1.03135543248187,1.70219802876894,0,0.129358683782755,0.214337035031592,0.709360934569094,0.178368817602071,0.493647061806363,0.304464949114599,0.469343416127421,0.63549621259146,2.20528398054962,1.48397627647332,0.645857706783622,0.542816324353403,0.477489376012546,1.14898629821543,1.7488850197791,0,0,0,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,0.609958401380546,0.432021363287205,0.209088296014469,0.655087691238533,0.674321731924103,1.07449492442937,2.35580347785627,1.68499465279331,2.4853572523477,0,0.149516546043979,0.165458490457098,0,0,0,0,0,0,0,0,0,0.810900861160657,0.308132871494482,0,0.179026695667481,0,0.120195449519969,0,0,0.0762068066549998,0,0.292373642219257,0,0,0.680191150845634,0.665957860122194,0,0.167884616364078,1.54551675225752,0.375364950902364,0.549454872801795,0.428736758158132,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0,0.399024873401031,0,0.486213434136588,0,0,0,0,0,0.252697211763798,0,0.377252682772152,0.37456602987953,0.0640251524048693,0.0574354689556133,0.476293691283074,0,0,0,0.147198920134397,0,0,0.238436189947321,0.145346416632329,0.0941093804153306,0,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0.385813221962283,0,0.233931608445408,0,0,0,0 | |||
|short_description=p7@Prrg2 | |||
}} |
Latest revision as of 20:40, 26 September 2015
Short description: | p7@Prrg2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_Prrg2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2469 |
Association with transcript: | -39bp_to_ENSMUST00000107832_5end |
EntrezGene: | Prrg2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 5.07e-14 | 9 |
epithelial cell of alimentary canal | 5.07e-14 | 9 |
brush border epithelial cell | 8.44e-11 | 6 |
gut absorptive cell | 8.44e-11 | 6 |
enterocyte | 8.44e-11 | 6 |
epithelial cell | 1.73e-10 | 25 |
endodermal cell | 6.06e-10 | 20 |
columnar/cuboidal epithelial cell | 4.03e-09 | 7 |
endo-epithelial cell | 1.17e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.19e-22 | 15 |
intestinal mucosa | 2.53e-20 | 13 |
wall of intestine | 2.53e-20 | 13 |
gastrointestinal system mucosa | 2.53e-20 | 13 |
intestine | 2.68e-20 | 31 |
gastrointestinal system | 2.64e-17 | 47 |
organ component layer | 1.49e-14 | 24 |
epithelium of mucosa | 5.07e-14 | 9 |
gastrointestinal system epithelium | 5.07e-14 | 9 |
intestinal epithelium | 5.07e-14 | 9 |
digestive system | 2.01e-13 | 116 |
digestive tract | 2.01e-13 | 116 |
primitive gut | 2.01e-13 | 116 |
endoderm-derived structure | 4.99e-13 | 118 |
endoderm | 4.99e-13 | 118 |
presumptive endoderm | 4.99e-13 | 118 |
subdivision of digestive tract | 5.37e-12 | 114 |
simple columnar epithelium | 4.03e-11 | 11 |
adult organism | 4.04e-11 | 51 |
small intestine | 1.89e-07 | 4 |