FFCP PHASE1:Mm9::chr12:57714257..57714278,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18094 | |EntrezGene=18094 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=97 | |||
|TSSclassifier=NA | |||
|UniProt=B2RWY9 | |UniProt=B2RWY9 | ||
|association_with_transcript=0bp_to_ENSMUST00000072631,ENSMUST00000171331,NM_008701,uc007nph.1_5end | |association_with_transcript=0bp_to_ENSMUST00000072631,ENSMUST00000171331,NM_008701,uc007nph.1_5end | ||
|cluster_id=chr12:57714257..57714278,- | |||
|description=CAGE_peak_1_at_Nkx2-9_5end | |description=CAGE_peak_1_at_Nkx2-9_5end | ||
|id=chr12:57714257..57714278,- | |id=chr12:57714257..57714278,- | ||
|ontology_enrichment_celltype=CL:0000540!1.40e-09!33;CL:0000047!1.40e-09!33;CL:0000031!1.40e-09!33;CL:0000404!1.40e-09!33;CL:0000393!1.48e-07!39;CL:0000211!1.48e-07!39;CL:0002319!1.51e-07!43;CL:0000349!1.54e-07!3;CL:0000351!1.54e-07!3;CL:0000221!2.72e-07!44;CL:0000133!2.72e-07!44;CL:0002610!4.85e-07!3;CL:0000107!5.53e-07!9 | |ontology_enrichment_celltype=CL:0000540!1.40e-09!33;CL:0000047!1.40e-09!33;CL:0000031!1.40e-09!33;CL:0000404!1.40e-09!33;CL:0000393!1.48e-07!39;CL:0000211!1.48e-07!39;CL:0002319!1.51e-07!43;CL:0000349!1.54e-07!3;CL:0000351!1.54e-07!3;CL:0000221!2.72e-07!44;CL:0000133!2.72e-07!44;CL:0002610!4.85e-07!3;CL:0000107!5.53e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.42e-20,3;CL:0000351,1.42e-20,3;CL:0002610,5.44e-19,3;CL:0002614,1.79e-09,3;CL:0000117,9.66e-07,23;CL:0000337,9.66e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.59e-10!73;UBERON:0005743!2.59e-10!73;UBERON:0000073!7.19e-10!75;UBERON:0001016!7.19e-10!75;UBERON:0003076!2.59e-09!12;UBERON:0003057!2.59e-09!12;UBERON:0002298!5.85e-09!6;UBERON:0000358!1.54e-07!3;UBERON:0000307!1.54e-07!3;UBERON:0004121!4.66e-07!102;UBERON:0000924!4.66e-07!102;UBERON:0006601!4.66e-07!102;UBERON:0004684!4.85e-07!3;UBERON:0002275!4.85e-07!3;UBERON:0002410!5.53e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000358,1.42e-20,3;UBERON:0000307,1.42e-20,3;UBERON:0007010,1.42e-20,3;UBERON:0004684,5.44e-19,3;UBERON:0002275,5.44e-19,3;UBERON:0001896,9.45e-14,2;UBERON:0002298,9.45e-14,2;UBERON:0005290,9.45e-14,2;UBERON:0010096,9.45e-14,2;UBERON:0004733,4.42e-10,6;UBERON:0004732,4.42e-10,6;UBERON:0002028,4.42e-10,6;UBERON:0007277,4.42e-10,6;UBERON:0002038,1.79e-09,3;UBERON:0009663,1.79e-09,3;UBERON:0009661,1.79e-09,3;UBERON:0000125,1.79e-09,3;UBERON:0002308,1.79e-09,3;UBERON:0003076,8.65e-09,12;UBERON:0003057,8.65e-09,12;UBERON:0002950,2.57e-07,4;UBERON:0001891,2.57e-07,4;UBERON:0009616,2.57e-07,4;UBERON:0010286,2.57e-07,4 | |||
|phase1_expression=0,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0.441737081903227,0,0,0,1.10115880999389,1.14918604276669,1.53606533256243,0.131886287730194,0,0,3.07101298901519,0,2.29197371665215,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,1.01219549843938,0,0,0,0,0,1.46390398505774,0.209446706813455,0,0,0,0,0.748953197024114,0.915001205637253,0,0,0,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0.162137619091711,0.146199987425332,0.658650345873152,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40825884981688,2.81308047821288,0,0,0.631016438832513,0,0,0.238968797952552,0,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.7481843623258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,4.43971906748129,9.06109951755704,6.2117308054709,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0.231867835620421 | |phase1_expression=0,0,0.454999239389536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0.441737081903227,0,0,0,1.10115880999389,1.14918604276669,1.53606533256243,0.131886287730194,0,0,3.07101298901519,0,2.29197371665215,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,0.505524445014783,0,0,0,0,0,0,0,0,0,0,1.01219549843938,0,0,0,0,0,1.46390398505774,0.209446706813455,0,0,0,0,0.748953197024114,0.915001205637253,0,0,0,0.20778804455956,0.162241263067758,0,0,0,0,0,0,0,0,0,0,0,0.258703370739016,0,0,0.175951124163949,0,0,0,0,0,0,0,0,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0.162137619091711,0.146199987425332,0.658650345873152,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40825884981688,2.81308047821288,0,0,0.631016438832513,0,0,0.238968797952552,0,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.7481843623258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194451188344048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,4.43971906748129,9.06109951755704,6.2117308054709,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0.231867835620421 | ||
|short_description=p1@Nkx2-9 | |short_description=p1@Nkx2-9 | ||
}} | }} |
Latest revision as of 16:45, 26 September 2015
Short description: | p1@Nkx2-9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nkx2-9_5end |
Coexpression cluster: | MCL_coexpression_mm9:97 |
Association with transcript: | 0bp_to_ENSMUST00000072631, ENSMUST00000171331, NM_008701, uc007nph.1_5end |
EntrezGene: | Nkx2-9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.42e-20 | 3 |
trophoblast cell | 1.42e-20 | 3 |
raphe nuclei neuron | 5.44e-19 | 3 |
neuron of the substantia nigra | 1.79e-09 | 3 |
CNS neuron (sensu Vertebrata) | 9.66e-07 | 23 |
neuroblast (sensu Vertebrata) | 9.66e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
blastocyst | 1.42e-20 | 3 |
blastula | 1.42e-20 | 3 |
cleaving embryo | 1.42e-20 | 3 |
raphe nuclei | 5.44e-19 | 3 |
reticular formation | 5.44e-19 | 3 |
medulla oblongata | 9.45e-14 | 2 |
brainstem | 9.45e-14 | 2 |
myelencephalon | 9.45e-14 | 2 |
future myelencephalon | 9.45e-14 | 2 |
segmental subdivision of hindbrain | 4.42e-10 | 6 |
segmental subdivision of nervous system | 4.42e-10 | 6 |
hindbrain | 4.42e-10 | 6 |
presumptive hindbrain | 4.42e-10 | 6 |
substantia nigra | 1.79e-09 | 3 |
telencephalic nucleus | 1.79e-09 | 3 |
midbrain nucleus | 1.79e-09 | 3 |
neural nucleus | 1.79e-09 | 3 |
nucleus of brain | 1.79e-09 | 3 |
posterior neural tube | 8.65e-09 | 12 |
chordal neural plate | 8.65e-09 | 12 |
regional part of midbrain | 2.57e-07 | 4 |
midbrain | 2.57e-07 | 4 |
presumptive midbrain | 2.57e-07 | 4 |
midbrain neural tube | 2.57e-07 | 4 |