FFCP PHASE1:Mm9::chr7:29620878..29620894,+: Difference between revisions
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{{FFCP|EntrezGene=16855|HGNC=|MCL_coexpression_id=12|UniProt=|association_with_transcript=32bp_to_ENSMUST00000151547_5end|description=CAGE_peak_3_at_Lgals4_5end|id=chr7:29620878..29620894,+|ontology_enrichment_celltype=CL:0002563!1.87e-12!9;CL:0002251!1.87e-12!9;CL:0000239!2.34e-09!6;CL:0000677!2.34e-09!6;CL:0000212!2.34e-09!6;CL:0000584!2.34e-09!6;CL:0000075!7.97e-08!7|ontology_enrichment_celltype_v019_2=CL:0002563,6.89e-22,9;CL:0002251,6.89e-22,9;CL:0000239,4.20e-16,6;CL:0000677,4.20e-16,6;CL:0000584,4.20e-16,6;CL:0000075,1.09e-13,7;CL:0000066,8.59e-13,25;CL:0002076,1.95e-12,15;CL:0000682,3.16e-09,3;CL:0000223,6.71e-09,20;CL:0002250,2.11e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!4.23e-27!59;UBERON:0000160!4.17e-24!43;UBERON:0000344!3.71e-20!15;UBERON:0001242!1.27e-17!13;UBERON:0000060!1.27e-17!13;UBERON:0001262!1.27e-17!13;UBERON:0004786!1.27e-17!13;UBERON:0003350!1.87e-12!9;UBERON:0004808!1.87e-12!9;UBERON:0001277!1.87e-12!9;UBERON:0004923!1.02e-10!24;UBERON:0001007!2.33e-10!128;UBERON:0001555!2.33e-10!128;UBERON:0007026!2.33e-10!128;UBERON:0004119!5.33e-10!130;UBERON:0000925!5.33e-10!130;UBERON:0006595!5.33e-10!130;UBERON:0000485!1.01e-09!11;UBERON:0004921!4.36e-09!126;UBERON:0004185!4.36e-09!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.98e-57,31;UBERON:0005409,1.99e-41,47;UBERON:0000344,2.52e-36,15;UBERON:0001242,1.44e-31,13;UBERON:0001262,1.44e-31,13;UBERON:0004786,1.44e-31,13;UBERON:0003350,6.89e-22,9;UBERON:0004808,6.89e-22,9;UBERON:0001277,6.89e-22,9;UBERON:0004923,2.36e-21,24;UBERON:0000485,1.36e-17,11;UBERON:0001007,1.73e-15,116;UBERON:0001555,1.73e-15,116;UBERON:0007026,1.73e-15,116;UBERON:0004119,4.12e-15,118;UBERON:0000925,4.12e-15,118;UBERON:0006595,4.12e-15,118;UBERON:0004921,2.91e-13,114;UBERON:0002108,3.50e-11,4;UBERON:0000331,5.11e-09,3;UBERON:0002116,5.11e-09,3;UBERON:0001204,5.11e-09,3;UBERON:0001168,5.11e-09,3|phase1_expression=0,10.4692622291808,9.55498402718026,8.77146212789807,7.51343594919521,7.89032577985882,10.7461814673942,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0,0,0,6.55968933452967,8.02932483735095,10.3361753540704,11.1998119001359,11.8509177977239,19.7624356234629,9.32511480111744,8.42575940490158,0,0,0,1.73310971850765,2.1610503896604,2.45003227514843,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,3.72783522436244,0,0,4.34276993854605,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0.292399974850665,0,0.268412837520744,0,0,3.30418782983798,2.90895623329899,0,0.232236671860439,0.515469845288373,1.4117846723634,1.11189021922435,1.52180500890047,7.11793592316767,2.30578536613615,2.76468729680296,1.39269530428806,1.36474860983384,3.59527763461689,2.16138049874694,4.38110801159608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0,0.203319467126849,0.432021363287205,0.209088296014469,0.87345025498471,0.269728692769641,0.247960367176008,0.26175594198403,3.11075935900303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0.377252682772152,0.0936415074698824,0,0.17230640686684,0,0,0.38581844092741,0.412085900803307,0.441596760403192,0.685738504770831,0.354951612318675,0,0,0,0.25384382367503,0,0,0.679020569229309,0,0.237270036248348,0.0985044823755635,0,0,0.385813221962283,0,0,0.214871054048298,0,0,0|short_description=p3@Lgals4}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16855 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=32bp_to_ENSMUST00000151547_5end | |||
|cluster_id=chr7:29620878..29620894,+ | |||
|description=CAGE_peak_3_at_Lgals4_5end | |||
|id=chr7:29620878..29620894,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.87e-12!9;CL:0002251!1.87e-12!9;CL:0000239!2.34e-09!6;CL:0000677!2.34e-09!6;CL:0000212!2.34e-09!6;CL:0000584!2.34e-09!6;CL:0000075!7.97e-08!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.89e-22,9;CL:0002251,6.89e-22,9;CL:0000239,4.20e-16,6;CL:0000677,4.20e-16,6;CL:0000584,4.20e-16,6;CL:0000075,1.09e-13,7;CL:0000066,8.59e-13,25;CL:0002076,1.95e-12,15;CL:0000682,3.16e-09,3;CL:0000223,6.71e-09,20;CL:0002250,2.11e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.23e-27!59;UBERON:0000160!4.17e-24!43;UBERON:0000344!3.71e-20!15;UBERON:0001242!1.27e-17!13;UBERON:0000060!1.27e-17!13;UBERON:0001262!1.27e-17!13;UBERON:0004786!1.27e-17!13;UBERON:0003350!1.87e-12!9;UBERON:0004808!1.87e-12!9;UBERON:0001277!1.87e-12!9;UBERON:0004923!1.02e-10!24;UBERON:0001007!2.33e-10!128;UBERON:0001555!2.33e-10!128;UBERON:0007026!2.33e-10!128;UBERON:0004119!5.33e-10!130;UBERON:0000925!5.33e-10!130;UBERON:0006595!5.33e-10!130;UBERON:0000485!1.01e-09!11;UBERON:0004921!4.36e-09!126;UBERON:0004185!4.36e-09!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.98e-57,31;UBERON:0005409,1.99e-41,47;UBERON:0000344,2.52e-36,15;UBERON:0001242,1.44e-31,13;UBERON:0001262,1.44e-31,13;UBERON:0004786,1.44e-31,13;UBERON:0003350,6.89e-22,9;UBERON:0004808,6.89e-22,9;UBERON:0001277,6.89e-22,9;UBERON:0004923,2.36e-21,24;UBERON:0000485,1.36e-17,11;UBERON:0001007,1.73e-15,116;UBERON:0001555,1.73e-15,116;UBERON:0007026,1.73e-15,116;UBERON:0004119,4.12e-15,118;UBERON:0000925,4.12e-15,118;UBERON:0006595,4.12e-15,118;UBERON:0004921,2.91e-13,114;UBERON:0002108,3.50e-11,4;UBERON:0000331,5.11e-09,3;UBERON:0002116,5.11e-09,3;UBERON:0001204,5.11e-09,3;UBERON:0001168,5.11e-09,3 | |||
|phase1_expression=0,10.4692622291808,9.55498402718026,8.77146212789807,7.51343594919521,7.89032577985882,10.7461814673942,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,0,0,0,6.55968933452967,8.02932483735095,10.3361753540704,11.1998119001359,11.8509177977239,19.7624356234629,9.32511480111744,8.42575940490158,0,0,0,1.73310971850765,2.1610503896604,2.45003227514843,0,0,0,0,0,0,0.125896817975577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,3.72783522436244,0,0,4.34276993854605,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268273401399619,0,0,0,0.0810688095458557,0.292399974850665,0,0.268412837520744,0,0,3.30418782983798,2.90895623329899,0,0.232236671860439,0.515469845288373,1.4117846723634,1.11189021922435,1.52180500890047,7.11793592316767,2.30578536613615,2.76468729680296,1.39269530428806,1.36474860983384,3.59527763461689,2.16138049874694,4.38110801159608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,1.03371317267288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0,0.203319467126849,0.432021363287205,0.209088296014469,0.87345025498471,0.269728692769641,0.247960367176008,0.26175594198403,3.11075935900303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0.377252682772152,0.0936415074698824,0,0.17230640686684,0,0,0.38581844092741,0.412085900803307,0.441596760403192,0.685738504770831,0.354951612318675,0,0,0,0.25384382367503,0,0,0.679020569229309,0,0.237270036248348,0.0985044823755635,0,0,0.385813221962283,0,0,0.214871054048298,0,0,0 | |||
|short_description=p3@Lgals4 | |||
}} |
Latest revision as of 13:25, 26 September 2015
Short description: | p3@Lgals4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lgals4_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 32bp_to_ENSMUST00000151547_5end |
EntrezGene: | Lgals4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.89e-22 | 9 |
epithelial cell of alimentary canal | 6.89e-22 | 9 |
brush border epithelial cell | 4.20e-16 | 6 |
gut absorptive cell | 4.20e-16 | 6 |
enterocyte | 4.20e-16 | 6 |
columnar/cuboidal epithelial cell | 1.09e-13 | 7 |
epithelial cell | 8.59e-13 | 25 |
endo-epithelial cell | 1.95e-12 | 15 |
M cell of gut | 3.16e-09 | 3 |
endodermal cell | 6.71e-09 | 20 |
intestinal crypt stem cell | 2.11e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.98e-57 | 31 |
gastrointestinal system | 1.99e-41 | 47 |
mucosa | 2.52e-36 | 15 |
intestinal mucosa | 1.44e-31 | 13 |
wall of intestine | 1.44e-31 | 13 |
gastrointestinal system mucosa | 1.44e-31 | 13 |
epithelium of mucosa | 6.89e-22 | 9 |
gastrointestinal system epithelium | 6.89e-22 | 9 |
intestinal epithelium | 6.89e-22 | 9 |
organ component layer | 2.36e-21 | 24 |
simple columnar epithelium | 1.36e-17 | 11 |
digestive system | 1.73e-15 | 116 |
digestive tract | 1.73e-15 | 116 |
primitive gut | 1.73e-15 | 116 |
endoderm-derived structure | 4.12e-15 | 118 |
endoderm | 4.12e-15 | 118 |
presumptive endoderm | 4.12e-15 | 118 |
subdivision of digestive tract | 2.91e-13 | 114 |
small intestine | 3.50e-11 | 4 |
ileal mucosa | 5.11e-09 | 3 |
ileum | 5.11e-09 | 3 |
mucosa of small intestine | 5.11e-09 | 3 |
wall of small intestine | 5.11e-09 | 3 |