FFCP PHASE1:Mm9::chr17:31701800..31701818,+: Difference between revisions
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{{FFCP|EntrezGene=18771|HGNC=|MCL_coexpression_id=33|UniProt=O70477|association_with_transcript=82bp_to_ENSMUST00000097352,NM_016670,NR_027493,uc008bvh.2,uc008bvi.2_5end|description=CAGE_peak_2_at_Pknox1_5end|id=chr17:31701800..31701818,+|ontology_enrichment_celltype=CL:0000838!1.75e-08!12;CL:0000542!5.25e-08!13;CL:0000051!5.25e-08!13;CL:0000084!7.87e-08!11;CL:0000827!7.87e-08!11;CL:0000791!5.58e-07!9;CL:0000789!5.58e-07!9;CL:0002420!5.58e-07!9;CL:0002419!5.58e-07!9;CL:0000790!5.58e-07!9|ontology_enrichment_celltype_v019_2=CL:0000838,1.22e-08,12;CL:0000542,3.75e-08,13;CL:0000051,3.75e-08,13;CL:0000084,5.67e-08,11;CL:0000827,5.67e-08,11;CL:0000791,4.20e-07,9;CL:0000789,4.20e-07,9;CL:0002420,4.20e-07,9;CL:0002419,4.20e-07,9;CL:0000790,4.20e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.09e-08!29;UBERON:0006562!2.50e-08!24;UBERON:0001557!2.50e-08!24;UBERON:0001042!2.50e-08!24;UBERON:0008814!2.50e-08!24;UBERON:0009145!2.50e-08!24;UBERON:0002370!3.94e-08!23;UBERON:0000974!3.94e-08!23;UBERON:0004807!3.94e-08!23;UBERON:0005058!3.94e-08!23;UBERON:0003351!3.94e-08!23;UBERON:0009113!3.94e-08!23;UBERON:0003295!3.94e-08!23;UBERON:0009722!3.94e-08!23;UBERON:0005562!3.94e-08!23;UBERON:0007690!3.94e-08!23;UBERON:0000065!6.45e-08!41;UBERON:0001004!2.57e-07!42;UBERON:0003408!2.85e-07!24;UBERON:0005911!6.17e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0006562,6.35e-09,24;UBERON:0001557,6.35e-09,24;UBERON:0001042,6.35e-09,24;UBERON:0008814,6.35e-09,24;UBERON:0009145,6.35e-09,24;UBERON:0004177,8.00e-09,29;UBERON:0005057,8.00e-09,29;UBERON:0002370,1.01e-08,23;UBERON:0000974,1.01e-08,23;UBERON:0004807,1.01e-08,23;UBERON:0005058,1.01e-08,23;UBERON:0003351,1.01e-08,23;UBERON:0009113,1.01e-08,23;UBERON:0003295,1.01e-08,23;UBERON:0009722,1.01e-08,23;UBERON:0005562,1.01e-08,23;UBERON:0007690,1.01e-08,23;UBERON:0000065,2.27e-08,41;UBERON:0000153,2.45e-08,43;UBERON:0003408,8.21e-08,24;UBERON:0001004,9.66e-08,42;UBERON:0007811,2.41e-07,36;UBERON:0000077,2.48e-07,35;UBERON:0005911,2.91e-07,69;UBERON:0002193,4.94e-07,48;UBERON:0002405,4.94e-07,48|phase1_expression=0.960893082628764,2.79180326111489,3.18499467572675,3.93203474698879,3.00537437967808,2.51818907867835,2.10251376535973,7.23090611272827,7.46180227403834,7.49006484230379,5.30775701499065,2.95156988282745,12.1552518251156,9.17914225399473,1.33243904726265,1.41732687172878,2.09868563438444,4.57420139769445,3.56497527374921,5.51706547337439,1.7008658030214,2.87943758482567,3.91799683708403,1.59992422793407,2.98232065387321,1.14846392823004,0.430761996159075,1.72376986148711,1.71021077510736,1.26015064879965,1.33038306393183,0,1.84519436275371,0,1.1554064790051,1.16364251750945,1.02084678131185,2.92972141515835,2.3440060335714,2.09409497589519,2.94115744015507,2.73218193983378,2.42755176515577,0.251793635951155,0.709638518536602,0.367093504323363,0,0.218025156380447,0.219686182734472,1.1665793944457,0.699932108126813,0,9.56360854529097,16.6833292662609,21.1739093459752,0.514518872071894,0.573066879877513,1.03134418455488,1.01158230429799,3.1739458756322,0.633831403506179,2.03306719241479,0,2.2497492932035,1.97773272513395,0.7104801149461,0.898800331555214,0.384218305321555,1.65903379693564,1.35005938331691,1.26194976810829,1.99955689082663,3.09215957332259,2.9397791811589,2.58782771749238,3.67687514644008,0,0.638436690425939,0.46081959976873,1.97829431595291,1.64677758484337,1.56274011167028,0.837548997004143,0,0.61119299110724,3.24091444021034,1.70846016958924,2.98239113320481,1.13589289999776,1.20914496170857,1.44932244350839,2.58127163094416,0.679971333707751,0.539703191637817,2.59910566979068,0.448026887097336,1.68533304158102,0.681721290312231,1.81850203222008,0.70667914902068,1.26759077799012,2.56652954828636,0,0,0.649473123033642,0.506719730950197,1.01104889002957,1.25602267690966,4.40194402200192,1.03909497345377,1.56136794089522,1.21786191324856,1.38369298353635,0.452167921657868,1.41106448562846,0.628332956648377,2.71914464507811,1.15679485535929,6.19227386364912,1.29413479957927,3.09178125844551,2.42437626567611,0,3.51336956413857,1.67557365450764,1.27728527604296,0.718890747035522,1.79970819298022,0.889491589511453,1.04853447583376,0.915001205637253,2.01046963380583,0.347648640384553,1.02286182932132,1.0389402227978,1.94689515681309,0.916554274652847,3.35898820647251,2.27450482590307,2.10441855886474,0.780722657776222,1.83921683546778,1.44049703844279,1.65775299619287,2.24520447199382,2.69038812598185,2.90475346135159,2.32833033665114,2.80238390812695,2.45837904218165,2.63926686245923,1.7535658594206,2.50242524303038,1.74126083261083,1.23469281844766,0.398068533636986,0.702213187313235,2.05878325691772,1.13665399758237,1.44988040774851,0.234526059981096,1.98068267607116,1.18372367792605,0.393528463494808,0.462801338662135,1.16266972375204,1.60964040839772,1.5179494507732,0.16455984991348,1.31333971263276,0.972825714550269,2.19299981137998,0.219550115291051,2.01309628140558,0.630869845692382,1.8522830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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18771 | |||
|HGNC= | |||
|MCL_coexpression_id=33 | |||
|TSSclassifier=NA | |||
|UniProt=O70477 | |||
|association_with_transcript=82bp_to_ENSMUST00000097352,NM_016670,NR_027493,uc008bvh.2,uc008bvi.2_5end | |||
|cluster_id=chr17:31701800..31701818,+ | |||
|description=CAGE_peak_2_at_Pknox1_5end | |||
|id=chr17:31701800..31701818,+ | |||
|ontology_enrichment_celltype=CL:0000838!1.75e-08!12;CL:0000542!5.25e-08!13;CL:0000051!5.25e-08!13;CL:0000084!7.87e-08!11;CL:0000827!7.87e-08!11;CL:0000791!5.58e-07!9;CL:0000789!5.58e-07!9;CL:0002420!5.58e-07!9;CL:0002419!5.58e-07!9;CL:0000790!5.58e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.22e-08,12;CL:0000542,3.75e-08,13;CL:0000051,3.75e-08,13;CL:0000084,5.67e-08,11;CL:0000827,5.67e-08,11;CL:0000791,4.20e-07,9;CL:0000789,4.20e-07,9;CL:0002420,4.20e-07,9;CL:0002419,4.20e-07,9;CL:0000790,4.20e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.09e-08!29;UBERON:0006562!2.50e-08!24;UBERON:0001557!2.50e-08!24;UBERON:0001042!2.50e-08!24;UBERON:0008814!2.50e-08!24;UBERON:0009145!2.50e-08!24;UBERON:0002370!3.94e-08!23;UBERON:0000974!3.94e-08!23;UBERON:0004807!3.94e-08!23;UBERON:0005058!3.94e-08!23;UBERON:0003351!3.94e-08!23;UBERON:0009113!3.94e-08!23;UBERON:0003295!3.94e-08!23;UBERON:0009722!3.94e-08!23;UBERON:0005562!3.94e-08!23;UBERON:0007690!3.94e-08!23;UBERON:0000065!6.45e-08!41;UBERON:0001004!2.57e-07!42;UBERON:0003408!2.85e-07!24;UBERON:0005911!6.17e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006562,6.35e-09,24;UBERON:0001557,6.35e-09,24;UBERON:0001042,6.35e-09,24;UBERON:0008814,6.35e-09,24;UBERON:0009145,6.35e-09,24;UBERON:0004177,8.00e-09,29;UBERON:0005057,8.00e-09,29;UBERON:0002370,1.01e-08,23;UBERON:0000974,1.01e-08,23;UBERON:0004807,1.01e-08,23;UBERON:0005058,1.01e-08,23;UBERON:0003351,1.01e-08,23;UBERON:0009113,1.01e-08,23;UBERON:0003295,1.01e-08,23;UBERON:0009722,1.01e-08,23;UBERON:0005562,1.01e-08,23;UBERON:0007690,1.01e-08,23;UBERON:0000065,2.27e-08,41;UBERON:0000153,2.45e-08,43;UBERON:0003408,8.21e-08,24;UBERON:0001004,9.66e-08,42;UBERON:0007811,2.41e-07,36;UBERON:0000077,2.48e-07,35;UBERON:0005911,2.91e-07,69;UBERON:0002193,4.94e-07,48;UBERON:0002405,4.94e-07,48 | |||
|phase1_expression=0.960893082628764,2.79180326111489,3.18499467572675,3.93203474698879,3.00537437967808,2.51818907867835,2.10251376535973,7.23090611272827,7.46180227403834,7.49006484230379,5.30775701499065,2.95156988282745,12.1552518251156,9.17914225399473,1.33243904726265,1.41732687172878,2.09868563438444,4.57420139769445,3.56497527374921,5.51706547337439,1.7008658030214,2.87943758482567,3.91799683708403,1.59992422793407,2.98232065387321,1.14846392823004,0.430761996159075,1.72376986148711,1.71021077510736,1.26015064879965,1.33038306393183,0,1.84519436275371,0,1.1554064790051,1.16364251750945,1.02084678131185,2.92972141515835,2.3440060335714,2.09409497589519,2.94115744015507,2.73218193983378,2.42755176515577,0.251793635951155,0.709638518536602,0.367093504323363,0,0.218025156380447,0.219686182734472,1.1665793944457,0.699932108126813,0,9.56360854529097,16.6833292662609,21.1739093459752,0.514518872071894,0.573066879877513,1.03134418455488,1.01158230429799,3.1739458756322,0.633831403506179,2.03306719241479,0,2.2497492932035,1.97773272513395,0.7104801149461,0.898800331555214,0.384218305321555,1.65903379693564,1.35005938331691,1.26194976810829,1.99955689082663,3.09215957332259,2.9397791811589,2.58782771749238,3.67687514644008,0,0.638436690425939,0.46081959976873,1.97829431595291,1.64677758484337,1.56274011167028,0.837548997004143,0,0.61119299110724,3.24091444021034,1.70846016958924,2.98239113320481,1.13589289999776,1.20914496170857,1.44932244350839,2.58127163094416,0.679971333707751,0.539703191637817,2.59910566979068,0.448026887097336,1.68533304158102,0.681721290312231,1.81850203222008,0.70667914902068,1.26759077799012,2.56652954828636,0,0,0.649473123033642,0.506719730950197,1.01104889002957,1.25602267690966,4.40194402200192,1.03909497345377,1.56136794089522,1.21786191324856,1.38369298353635,0.452167921657868,1.41106448562846,0.628332956648377,2.71914464507811,1.15679485535929,6.19227386364912,1.29413479957927,3.09178125844551,2.42437626567611,0,3.51336956413857,1.67557365450764,1.27728527604296,0.718890747035522,1.79970819298022,0.889491589511453,1.04853447583376,0.915001205637253,2.01046963380583,0.347648640384553,1.02286182932132,1.0389402227978,1.94689515681309,0.916554274652847,3.35898820647251,2.27450482590307,2.10441855886474,0.780722657776222,1.83921683546778,1.44049703844279,1.65775299619287,2.24520447199382,2.69038812598185,2.90475346135159,2.32833033665114,2.80238390812695,2.45837904218165,2.63926686245923,1.7535658594206,2.50242524303038,1.74126083261083,1.23469281844766,0.398068533636986,0.702213187313235,2.05878325691772,1.13665399758237,1.44988040774851,0.234526059981096,1.98068267607116,1.18372367792605,0.393528463494808,0.462801338662135,1.16266972375204,1.60964040839772,1.5179494507732,0.16455984991348,1.31333971263276,0.972825714550269,2.19299981137998,0.219550115291051,2.01309628140558,0.630869845692382,1.85228302282712,2.97376904685418,1.58670339998127,1.49301775374664,2.32236671860439,1.28867461322093,1.21010114774006,3.55804870151792,1.14135375667535,1.89811624617805,0.823494773620054,0.754005626400808,0.795825888164603,1.16978452271472,3.59527763461689,1.72910439899755,0.995706366271836,1.13800740571849,1.5994791765362,0,1.01825663922657,2.13347735884388,1.75339549725796,2.52946148497029,2.21415221969403,2.19798218977925,2.46794327843601,1.48226313543574,1.33476084572875,1.17935397067922,1.12431056192427,1.21716072833102,1.68824011826692,0.50925170356284,1.43848068725405,1.45921704097532,0.823684239564244,2.87536413054709,1.11642284300551,1.5601883655728,1.76805214562978,1.4351793081753,1.4473305640901,0.739012760666419,0.568474235311454,1.95557971730431,1.86719594352707,1.87752198630802,2.84760637651087,3.33261097240419,2.92700471786698,3.15270288212382,1.99318220683897,3.34855014180723,2.45794972073607,1.89953480052485,2.60368305446721,0,0.54390568381871,1.96705709207614,1.10374698521893,1.60550589987792,1.52375192569864,0.819674726883377,0.504941854408746,1.57754109708128,3.90438744296638,3.23135096599198,1.43381278771531,1.78238939265915,1.13230612315533,2.83367491172426,1.75353514746787,4.34816555741176,0.963963949265421,1.70328102249922,0.534196811001766,0.325773918707152,2.3095817216155,1.32745138339963,0.971122544619926,3.32555912661226,0.377210159511796,1.18120757152309,0.307435147943927,1.03371317267288,1.45413491791002,0.356497378384721,0.632073515871632,1.05418608574999,1.03135543248187,1.36175842301515,1.62054984628179,0.776152102696527,0.857348140126369,1.06404140185364,1.24858172321449,1.64549020602121,0.913394847343798,0.23467170806371,2.54198485036584,1.98475558249466,3.13283880588812,1.61464426695906,1.86970067277283,2.38744688006273,2.46211349617592,1.45740418314925,1.8542530201051,3.07567585436135,0.82554747185289,2.03713980106683,2.63715839806567,1.50363650493128,2.74533807847827,0.509935289981566,1.39951452323658,0.967399816630967,0,1.58167996790568,0.813277868507395,1.62008011232702,1.04544148007234,0.436725127492355,0.809186078308924,1.57041565878138,0.785267825952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| |||
|short_description=p2@Pknox1 | |||
}} |
Latest revision as of 05:51, 26 September 2015
Short description: | p2@Pknox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pknox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:33 |
Association with transcript: | 82bp_to_ENSMUST00000097352, NM_016670, NR_027493, uc008bvh.2, uc008bvi.2_5end |
EntrezGene: | Pknox1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.22e-08 | 12 |
lymphocyte | 3.75e-08 | 13 |
common lymphoid progenitor | 3.75e-08 | 13 |
T cell | 5.67e-08 | 11 |
pro-T cell | 5.67e-08 | 11 |
mature alpha-beta T cell | 4.20e-07 | 9 |
alpha-beta T cell | 4.20e-07 | 9 |
immature T cell | 4.20e-07 | 9 |
mature T cell | 4.20e-07 | 9 |
immature alpha-beta T cell | 4.20e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
pharynx | 6.35e-09 | 24 |
upper respiratory tract | 6.35e-09 | 24 |
chordate pharynx | 6.35e-09 | 24 |
pharyngeal arch system | 6.35e-09 | 24 |
pharyngeal region of foregut | 6.35e-09 | 24 |
hemopoietic organ | 8.00e-09 | 29 |
immune organ | 8.00e-09 | 29 |
thymus | 1.01e-08 | 23 |
neck | 1.01e-08 | 23 |
respiratory system epithelium | 1.01e-08 | 23 |
hemolymphoid system gland | 1.01e-08 | 23 |
pharyngeal epithelium | 1.01e-08 | 23 |
thymic region | 1.01e-08 | 23 |
pharyngeal gland | 1.01e-08 | 23 |
entire pharyngeal arch endoderm | 1.01e-08 | 23 |
thymus primordium | 1.01e-08 | 23 |
early pharyngeal endoderm | 1.01e-08 | 23 |
respiratory tract | 2.27e-08 | 41 |
anterior region of body | 2.45e-08 | 43 |
gland of gut | 8.21e-08 | 24 |
respiratory system | 9.66e-08 | 42 |
craniocervical region | 2.41e-07 | 36 |
mixed endoderm/mesoderm-derived structure | 2.48e-07 | 35 |
endo-epithelium | 2.91e-07 | 69 |
hemolymphoid system | 4.94e-07 | 48 |
immune system | 4.94e-07 | 48 |