FFCP PHASE1:Mm9::chr17:27693588..27693597,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=111241 | |EntrezGene=111241 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1706 | |MCL_coexpression_id=1706 | ||
|TSSclassifier=NA | |||
|UniProt=P17095,Q566K0,Q3TVP0 | |UniProt=P17095,Q566K0,Q3TVP0 | ||
|association_with_transcript=0bp_to_NM_001166476,NM_001166477_5end | |association_with_transcript=0bp_to_NM_001166476,NM_001166477_5end | ||
|cluster_id=chr17:27693588..27693597,+ | |||
|description=CAGE_peak_3_at_Hmga1-rs1_5end | |description=CAGE_peak_3_at_Hmga1-rs1_5end | ||
|id=chr17:27693588..27693597,+ | |id=chr17:27693588..27693597,+ | ||
|ontology_enrichment_celltype=CL:0000219!1.15e-09!54;CL:0000063!1.88e-09!66;CL:0000988!5.19e-08!32;CL:0002032!5.19e-08!32;CL:0000037!5.19e-08!32;CL:0000566!5.19e-08!32;CL:0000837!5.19e-08!32;CL:0000144!9.66e-08!121;CL:0000012!9.66e-08!121;CL:0002320!1.24e-07!46;CL:0000134!1.24e-07!46;CL:0000548!1.67e-07!115;CL:0000004!1.67e-07!115;CL:0000255!1.67e-07!115;CL:0002371!7.06e-07!118 | |ontology_enrichment_celltype=CL:0000219!1.15e-09!54;CL:0000063!1.88e-09!66;CL:0000988!5.19e-08!32;CL:0002032!5.19e-08!32;CL:0000037!5.19e-08!32;CL:0000566!5.19e-08!32;CL:0000837!5.19e-08!32;CL:0000144!9.66e-08!121;CL:0000012!9.66e-08!121;CL:0002320!1.24e-07!46;CL:0000134!1.24e-07!46;CL:0000548!1.67e-07!115;CL:0000004!1.67e-07!115;CL:0000255!1.67e-07!115;CL:0002371!7.06e-07!118 | ||
|ontology_enrichment_celltype_v019_2=CL:0000219,1.20e-09,54;CL:0000988,4.27e-08,32;CL:0002032,4.27e-08,32;CL:0000037,4.27e-08,32;CL:0000837,4.27e-08,32;CL:0002320,1.35e-07,46;CL:0000134,1.35e-07,46 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.55e-12!48;UBERON:0002390!1.63e-11!45;UBERON:0003061!1.63e-11!45;UBERON:0002405!9.02e-11!70;UBERON:0000072!8.85e-10!27;UBERON:0002370!8.93e-09!23;UBERON:0000974!8.93e-09!23;UBERON:0004807!8.93e-09!23;UBERON:0005058!8.93e-09!23;UBERON:0003351!8.93e-09!23;UBERON:0009113!8.93e-09!23;UBERON:0003295!8.93e-09!23;UBERON:0009722!8.93e-09!23;UBERON:0005562!8.93e-09!23;UBERON:0007690!8.93e-09!23;UBERON:0004177!9.64e-09!29;UBERON:0006562!5.58e-08!24;UBERON:0001557!5.58e-08!24;UBERON:0001042!5.58e-08!24;UBERON:0008814!5.58e-08!24;UBERON:0009145!5.58e-08!24;UBERON:0003408!1.16e-07!24;UBERON:0002384!1.24e-07!46;UBERON:0003929!1.49e-07!55;UBERON:0005057!1.95e-07!51;UBERON:0000063!2.47e-07!35;UBERON:0003081!7.70e-07!88 | |ontology_enrichment_uberon=UBERON:0002193!8.55e-12!48;UBERON:0002390!1.63e-11!45;UBERON:0003061!1.63e-11!45;UBERON:0002405!9.02e-11!70;UBERON:0000072!8.85e-10!27;UBERON:0002370!8.93e-09!23;UBERON:0000974!8.93e-09!23;UBERON:0004807!8.93e-09!23;UBERON:0005058!8.93e-09!23;UBERON:0003351!8.93e-09!23;UBERON:0009113!8.93e-09!23;UBERON:0003295!8.93e-09!23;UBERON:0009722!8.93e-09!23;UBERON:0005562!8.93e-09!23;UBERON:0007690!8.93e-09!23;UBERON:0004177!9.64e-09!29;UBERON:0006562!5.58e-08!24;UBERON:0001557!5.58e-08!24;UBERON:0001042!5.58e-08!24;UBERON:0008814!5.58e-08!24;UBERON:0009145!5.58e-08!24;UBERON:0003408!1.16e-07!24;UBERON:0002384!1.24e-07!46;UBERON:0003929!1.49e-07!55;UBERON:0005057!1.95e-07!51;UBERON:0000063!2.47e-07!35;UBERON:0003081!7.70e-07!88 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.29e-12,48;UBERON:0002405,6.29e-12,48;UBERON:0002390,1.21e-11,45;UBERON:0003061,1.21e-11,45;UBERON:0000072,1.01e-09,27;UBERON:0002370,7.18e-09,23;UBERON:0000974,7.18e-09,23;UBERON:0004807,7.18e-09,23;UBERON:0005058,7.18e-09,23;UBERON:0003351,7.18e-09,23;UBERON:0009113,7.18e-09,23;UBERON:0003295,7.18e-09,23;UBERON:0009722,7.18e-09,23;UBERON:0005562,7.18e-09,23;UBERON:0007690,7.18e-09,23;UBERON:0004177,7.76e-09,29;UBERON:0005057,7.76e-09,29;UBERON:0000153,1.92e-08,43;UBERON:0006562,6.56e-08,24;UBERON:0003408,6.56e-08,24;UBERON:0001557,6.56e-08,24;UBERON:0001042,6.56e-08,24;UBERON:0008814,6.56e-08,24;UBERON:0009145,6.56e-08,24;UBERON:0007811,7.11e-08,36;UBERON:0003929,1.04e-07,55;UBERON:0002384,1.35e-07,46;UBERON:0003081,7.66e-07,87 | |||
|phase1_expression=0.320297694209588,4.53668029931169,2.27499619694768,0.30246421130683,2.00358291978539,9.56911849897772,10.0453435456076,1.80772652818207,25.3419699873,12.8735489477096,11.8140398075598,16.6723812300253,3.25281386869291,2.27293046289393,2.99798785634096,3.64455481301687,1.39912375625629,4.10100814965709,3.70208970735495,3.81950686618227,0.850432901510698,14.9929336313337,22.9855814442263,3.51983330145495,4.12936705920906,2.8711598205751,6.8921919385452,7.11055067863434,1.90023419456374,3.78045194639896,5.76499327703792,9.52546010189447,18.4519436275371,47.5445043046316,17.908800424579,18.1195763440757,21.6419517638111,1.67412652294763,0,2.09409497589519,0,0,2.42755176515577,4.15459499319405,2.23029248682932,2.56965453026354,6.25913075478431,4.14247797122848,6.15121311656521,1.74986909166855,19.1781397626747,5.75010257459886,3.85899993932794,2.17608642603403,4.7053131879945,2.05807548828758,1.71920063963254,0.515672092277442,2.02316460859598,1.05798195854407,1.26766280701236,39.6448102520885,32.014612660001,8.09909745553259,5.93319817540185,8.5257613793532,5.39280198933128,4.61061966385865,2.28117147078651,0.945041568321835,2.94454945891935,2.57085885963423,0.662605622854841,3.55223317723367,5.271500906003,0.919218786610021,1.10115880999389,1.40456071893706,2.15049146558741,1.31886287730194,1.46380229763855,1.56274011167028,3.62937898701795,1.68828783009504,0.763991238884051,0.589257170947335,2.13557521198654,2.23679334990361,150.998029506369,150.46297617261,1.15945795480671,0.860423876981386,63.9173053685286,0.539703191637817,1.29955283489534,2.24013443548668,1.12355536105401,1.1930122580464,2.33807404142582,3.5333957451034,0.422530259330042,1.28326477414318,2.54805239706646,7.11066703153331,37.2364590539288,41.8043778033913,43.4751022712714,1.1418387971906,5.17875767294343,0.29688427812965,4.3371331691534,0.913396434936424,1.38369298353635,1.50722640552623,1.05829836422134,0.628332956648377,2.22475470960936,0.433798070759735,3.5384422077995,2.58826959915855,8.17113618303456,4.363877278217,5.59175283654366,0,0.628340120440365,2.04365644166873,10.7833612055328,7.7987355029143,11.9446013448681,1.3481157546434,0,0.628271760564322,0.173824320192276,0.255715457330331,1.45451631191692,0.648965052271031,1.32391173005411,3.98102305952298,0.505445516867349,3.78795340595653,9.10843100738926,7.81667155073808,22.687828355474,8.13806016312861,12.654788842147,6.27757229395764,8.71426038405478,2.32833033665114,15.5208954911646,7.75334928688059,4.57472922826267,5.91828477554452,2.22437799380478,2.43776516565517,2.05782136407943,2.18937693500343,13.3420505589515,16.2129181482271,8.52490498186778,15.5344329401626,4.92504725960302,3.78130329068131,6.15536312521547,1.96764231747404,1.54267112887378,1.62773761325285,1.07309360559848,2.33530684734339,2.30383789878873,1.31333971263276,1.86458261955468,1.90059983652932,1.09775057645525,1.47627060636409,0.210289948564127,0.411618449517138,0.660837565967596,3.96675849995316,9.59797127408553,7.89604684325491,13.1444810548535,9.4791256572971,6.89371935919098,3.23383564391351,1.42358718463353,3.62337700392824,3.2673577144035,1.39269530428806,0.974820435595601,5.39291645192533,1.72910439899755,1.99141273254367,8.34538764193559,6.96915926919346,3.38123207019241,3.66572390121566,2.13347735884388,3.15611189506434,0.569128834118316,1.03327103585722,0.31399745568275,0.740382983530803,2.07516838961004,22.1903990602405,21.4249304673391,19.5630037774823,11.1573066763677,10.8529721888588,2.80088436959562,8.63088412352432,5.99900339067631,3.84385978463314,1.43768206527355,2.23284568601102,3.43241440426017,0.505157755894224,1.97337154874103,0.482443521363367,0.554259570499814,6.82169082373745,12.0594082567099,3.05541154395339,3.28566347603903,5.19269398069629,0.476087281772027,1.36593553500459,0.157635144106191,0.44292937929755,0.478364305972461,0.655453258862952,1.55416483679306,0.723245292907558,9.04747703635634,8.70249094109935,0.491764273019036,1.37968373152366,1.12385412991454,1.75817529888305,8.6885521049638,0.252470927204373,2.2085575359138,0.780877488593277,1.29254038639679,3.34556317133573,5.56996685205985,7.35998980050964,1.61924280669958,1.75353514746787,1.58115111178609,0.963963949265421,0.99358059645788,1.42452482933804,2.44330439030364,0.164970122972535,0,7.04063844849446,6.04647113929502,3.20628635585027,1.47650946440386,0.922305443831782,1.29214146584111,0.727067458955011,1.78248689192361,0.316036757935816,0,0,0.340439605753788,6.66226047915848,1.4229455216103,1.92903331528433,0.354680467284547,0.178368817602071,0.658196082408484,1.522324745573,3.52007562095566,0.847328283455281,0,5.11147384118588,2.42196640043858,6.99629929166608,7.16234064018819,7.05805868903763,2.62332752966866,0.927126510052548,2.56306321196779,4.74689796315412,3.88908507476395,4.70921142511728,2.32380187125743,4.34678529092393,11.8984900995699,12.3157278044819,8.7065983496787,0.954670618015114,17.556647643753,7.9294592179471,2.26811215725783,3.55450103224597,0.87345025498471,2.42755823492677,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| ||
|short_description=p3@Hmga1-rs1 | |short_description=p3@Hmga1-rs1 | ||
}} | }} |
Latest revision as of 03:39, 26 September 2015
Short description: | p3@Hmga1-rs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hmga1-rs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1706 |
Association with transcript: | 0bp_to_NM_001166476, NM_001166477_5end |
EntrezGene: | Hmga1-rs1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 1.20e-09 | 54 |
hematopoietic cell | 4.27e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.27e-08 | 32 |
hematopoietic stem cell | 4.27e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.27e-08 | 32 |
connective tissue cell | 1.35e-07 | 46 |
mesenchymal cell | 1.35e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.29e-12 | 48 |
immune system | 6.29e-12 | 48 |
hematopoietic system | 1.21e-11 | 45 |
blood island | 1.21e-11 | 45 |
segment of respiratory tract | 1.01e-09 | 27 |
thymus | 7.18e-09 | 23 |
neck | 7.18e-09 | 23 |
respiratory system epithelium | 7.18e-09 | 23 |
hemolymphoid system gland | 7.18e-09 | 23 |
pharyngeal epithelium | 7.18e-09 | 23 |
thymic region | 7.18e-09 | 23 |
pharyngeal gland | 7.18e-09 | 23 |
entire pharyngeal arch endoderm | 7.18e-09 | 23 |
thymus primordium | 7.18e-09 | 23 |
early pharyngeal endoderm | 7.18e-09 | 23 |
hemopoietic organ | 7.76e-09 | 29 |
immune organ | 7.76e-09 | 29 |
anterior region of body | 1.92e-08 | 43 |
pharynx | 6.56e-08 | 24 |
gland of gut | 6.56e-08 | 24 |
upper respiratory tract | 6.56e-08 | 24 |
chordate pharynx | 6.56e-08 | 24 |
pharyngeal arch system | 6.56e-08 | 24 |
pharyngeal region of foregut | 6.56e-08 | 24 |
craniocervical region | 7.11e-08 | 36 |
gut epithelium | 1.04e-07 | 55 |
connective tissue | 1.35e-07 | 46 |
lateral plate mesoderm | 7.66e-07 | 87 |