FFCP PHASE1:Mm9::chr3:88265118..88265148,-: Difference between revisions
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{{FFCP|EntrezGene=20351|HGNC=|MCL_coexpression_id=1|UniProt=E9QKT4,Q62178|association_with_transcript=-14bp_to_ENSMUST00000107532,ENSMUST00000166237,NM_001163489,uc008pvi.2_5end|description=CAGE_peak_8_at_Sema4a_5end|id=chr3:88265118..88265148,-|ontology_enrichment_celltype=CL:0000117!8.02e-08!23;CL:0000337!8.02e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23;CL:0002610,1.46e-07,3;CL:0002614,3.34e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.99e-19!63;UBERON:0001049!2.27e-17!52;UBERON:0005068!2.27e-17!52;UBERON:0006241!2.27e-17!52;UBERON:0007135!2.27e-17!52;UBERON:0002346!8.68e-17!71;UBERON:0003075!8.68e-17!71;UBERON:0007284!8.68e-17!71;UBERON:0000955!2.38e-16!50;UBERON:0006238!2.38e-16!50;UBERON:0002020!4.74e-16!34;UBERON:0002616!1.57e-15!49;UBERON:0004121!2.97e-15!102;UBERON:0000924!2.97e-15!102;UBERON:0006601!2.97e-15!102;UBERON:0001017!4.23e-15!73;UBERON:0005743!4.23e-15!73;UBERON:0003056!3.38e-14!49;UBERON:0000073!3.47e-14!75;UBERON:0001016!3.47e-14!75;UBERON:0002791!1.22e-12!29;UBERON:0003528!1.22e-12!29;UBERON:0001893!1.22e-12!29;UBERON:0000153!6.27e-11!94;UBERON:0003080!1.30e-10!40;UBERON:0002780!6.70e-10!39;UBERON:0001890!6.70e-10!39;UBERON:0006240!6.70e-10!39;UBERON:0007811!2.20e-09!86;UBERON:0002619!8.02e-09!17;UBERON:0000956!2.07e-08!21;UBERON:0001869!2.07e-08!21;UBERON:0000203!2.07e-08!21;UBERON:0002021!2.13e-08!10;UBERON:0000411!2.13e-08!10;UBERON:0001950!2.13e-08!10;UBERON:0003076!2.92e-08!12;UBERON:0003057!2.92e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.37e-34,64;UBERON:0003075,1.37e-34,64;UBERON:0007284,1.37e-34,64;UBERON:0000073,1.91e-33,54;UBERON:0001049,4.82e-30,52;UBERON:0005068,4.82e-30,52;UBERON:0006241,4.82e-30,52;UBERON:0007135,4.82e-30,52;UBERON:0010371,2.76e-29,73;UBERON:0004121,1.71e-27,95;UBERON:0000924,1.71e-27,95;UBERON:0006601,1.71e-27,95;UBERON:0001017,1.07e-26,73;UBERON:0001016,9.18e-26,75;UBERON:0000955,2.45e-24,47;UBERON:0006238,2.45e-24,47;UBERON:0002020,3.89e-24,34;UBERON:0003056,7.84e-24,49;UBERON:0002616,1.26e-22,46;UBERON:0010314,1.70e-21,92;UBERON:0003528,1.78e-18,29;UBERON:0002791,1.78e-18,29;UBERON:0001893,1.78e-18,29;UBERON:0002021,4.72e-18,10;UBERON:0000411,4.72e-18,10;UBERON:0001950,4.72e-18,10;UBERON:0003080,7.48e-18,40;UBERON:0002780,2.59e-16,39;UBERON:0001890,2.59e-16,39;UBERON:0006240,2.59e-16,39;UBERON:0002619,2.77e-14,17;UBERON:0003076,1.32e-13,12;UBERON:0003057,1.32e-13,12;UBERON:0000956,2.41e-13,21;UBERON:0001869,2.41e-13,21;UBERON:0000203,2.41e-13,21;UBERON:0000025,1.11e-09,114;UBERON:0002950,2.50e-09,4;UBERON:0001891,2.50e-09,4;UBERON:0009616,2.50e-09,4;UBERON:0010286,2.50e-09,4;UBERON:0002240,3.10e-09,6;UBERON:0005174,3.10e-09,6;UBERON:0001137,3.10e-09,6;UBERON:0004111,1.41e-08,122;UBERON:0004684,1.46e-07,3;UBERON:0002275,1.46e-07,3;UBERON:0000483,2.06e-07,174;UBERON:0000119,3.11e-07,176;UBERON:0002038,3.34e-07,3;UBERON:0009663,3.34e-07,3;UBERON:0009661,3.34e-07,3;UBERON:0000125,3.34e-07,3;UBERON:0002308,3.34e-07,3;UBERON:0001948,3.41e-07,5;UBERON:0002315,3.41e-07,5;UBERON:0000970,6.70e-07,9;UBERON:0000019,6.70e-07,9;UBERON:0000047,6.70e-07,9;UBERON:0010312,6.70e-07,9;UBERON:0004088,6.70e-07,9;UBERON:0002104,6.70e-07,9;UBERON:0001456,6.70e-07,9;UBERON:0003072,6.70e-07,9;UBERON:0004128,6.70e-07,9;UBERON:0003071,6.70e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,0,0.55994568650145,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0.599200221036809,0.384218305321555,0,0.405017814995072,0,10.2834354385369,8.1721360152097,0.489963196859816,0.862609239164127,0,7.70811166995721,7.40586560894089,7.37311359629969,0.131886287730194,0.274462930807229,0.52091337055676,5.862842979029,7.31591393041184,7.02871939773326,3.83017161115768,4.55589378557129,0.372798891650601,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,4.9772735491963,5.23616767033638,0.255457055208591,0,0,0,9.8861822007183,5.03250663100489,2.51308704225729,7.99591872884472,6.13717097592793,8.10373373782284,6.97637431191358,0.101839363850316,0,0,1.05220927943237,0,0.459804208866946,0.180062129805349,1.35634336052144,4.01415344992834,3.45907044769094,2.43624483855295,4.9153640440413,0,0.189106080167819,0.351902248327898,0.876782929710299,1.11218899690239,1.0447564995665,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,7.36014819974445,1.02904612379284,0,0,0,0.232236671860439,0.644337306610467,0.403367049246685,0.22237804384487,0.190225626112559,0,0.494096864172033,0,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,0,0.387904974335251,0.350679099451593,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0.169745085775188,0.234690248288502,0,0,0,0.157635144106191,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,8.83028244932856,7.501547941901,0,0,0,0,0,0,0,0,0,0,0,13.1741739732941,0.141940085208269,0.712262414669021,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0.329098041204242,0,0,0,0,0,0.645857706783622,0.120625849856312,0.358117032009409,0.164140899745061,0.291480836629851,11.3109434226411,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0.418176592028937,0.218362563746178,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,4.14292712856459,2.29158205375759,4.81188910562325,6.85082519770642,3.0215755895588,6.75022500231806,4.95353323546643,3.62513927187364,5.1776031175182,0,0,0.170733605754134,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0.320919209591815,0,1.01391719956096,0.377252682772152,0.280924522409647,0.320125762024346,0.0574354689556133,0,0,0.192909220463705,0,0.441596760403192,0.342869252385415,0,0,0.290692833264657,0.0941093804153306,0.423073039458382,0.548783918618318,0.789209134313529,0.135804113845862,0,0.355905054372522,0.197008964751127,0.818462086339379,0.464810523557898,0.385813221962283,0.999242311751784,0,0.214871054048298,0.382576664137687,0.441182838239031,0.463735671240843|short_description=p8@Sema4a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20351 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9QKT4,Q62178 | |||
|association_with_transcript=-14bp_to_ENSMUST00000107532,ENSMUST00000166237,NM_001163489,uc008pvi.2_5end | |||
|cluster_id=chr3:88265118..88265148,- | |||
|description=CAGE_peak_8_at_Sema4a_5end | |||
|id=chr3:88265118..88265148,- | |||
|ontology_enrichment_celltype=CL:0000117!8.02e-08!23;CL:0000337!8.02e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23;CL:0002610,1.46e-07,3;CL:0002614,3.34e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.99e-19!63;UBERON:0001049!2.27e-17!52;UBERON:0005068!2.27e-17!52;UBERON:0006241!2.27e-17!52;UBERON:0007135!2.27e-17!52;UBERON:0002346!8.68e-17!71;UBERON:0003075!8.68e-17!71;UBERON:0007284!8.68e-17!71;UBERON:0000955!2.38e-16!50;UBERON:0006238!2.38e-16!50;UBERON:0002020!4.74e-16!34;UBERON:0002616!1.57e-15!49;UBERON:0004121!2.97e-15!102;UBERON:0000924!2.97e-15!102;UBERON:0006601!2.97e-15!102;UBERON:0001017!4.23e-15!73;UBERON:0005743!4.23e-15!73;UBERON:0003056!3.38e-14!49;UBERON:0000073!3.47e-14!75;UBERON:0001016!3.47e-14!75;UBERON:0002791!1.22e-12!29;UBERON:0003528!1.22e-12!29;UBERON:0001893!1.22e-12!29;UBERON:0000153!6.27e-11!94;UBERON:0003080!1.30e-10!40;UBERON:0002780!6.70e-10!39;UBERON:0001890!6.70e-10!39;UBERON:0006240!6.70e-10!39;UBERON:0007811!2.20e-09!86;UBERON:0002619!8.02e-09!17;UBERON:0000956!2.07e-08!21;UBERON:0001869!2.07e-08!21;UBERON:0000203!2.07e-08!21;UBERON:0002021!2.13e-08!10;UBERON:0000411!2.13e-08!10;UBERON:0001950!2.13e-08!10;UBERON:0003076!2.92e-08!12;UBERON:0003057!2.92e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.37e-34,64;UBERON:0003075,1.37e-34,64;UBERON:0007284,1.37e-34,64;UBERON:0000073,1.91e-33,54;UBERON:0001049,4.82e-30,52;UBERON:0005068,4.82e-30,52;UBERON:0006241,4.82e-30,52;UBERON:0007135,4.82e-30,52;UBERON:0010371,2.76e-29,73;UBERON:0004121,1.71e-27,95;UBERON:0000924,1.71e-27,95;UBERON:0006601,1.71e-27,95;UBERON:0001017,1.07e-26,73;UBERON:0001016,9.18e-26,75;UBERON:0000955,2.45e-24,47;UBERON:0006238,2.45e-24,47;UBERON:0002020,3.89e-24,34;UBERON:0003056,7.84e-24,49;UBERON:0002616,1.26e-22,46;UBERON:0010314,1.70e-21,92;UBERON:0003528,1.78e-18,29;UBERON:0002791,1.78e-18,29;UBERON:0001893,1.78e-18,29;UBERON:0002021,4.72e-18,10;UBERON:0000411,4.72e-18,10;UBERON:0001950,4.72e-18,10;UBERON:0003080,7.48e-18,40;UBERON:0002780,2.59e-16,39;UBERON:0001890,2.59e-16,39;UBERON:0006240,2.59e-16,39;UBERON:0002619,2.77e-14,17;UBERON:0003076,1.32e-13,12;UBERON:0003057,1.32e-13,12;UBERON:0000956,2.41e-13,21;UBERON:0001869,2.41e-13,21;UBERON:0000203,2.41e-13,21;UBERON:0000025,1.11e-09,114;UBERON:0002950,2.50e-09,4;UBERON:0001891,2.50e-09,4;UBERON:0009616,2.50e-09,4;UBERON:0010286,2.50e-09,4;UBERON:0002240,3.10e-09,6;UBERON:0005174,3.10e-09,6;UBERON:0001137,3.10e-09,6;UBERON:0004111,1.41e-08,122;UBERON:0004684,1.46e-07,3;UBERON:0002275,1.46e-07,3;UBERON:0000483,2.06e-07,174;UBERON:0000119,3.11e-07,176;UBERON:0002038,3.34e-07,3;UBERON:0009663,3.34e-07,3;UBERON:0009661,3.34e-07,3;UBERON:0000125,3.34e-07,3;UBERON:0002308,3.34e-07,3;UBERON:0001948,3.41e-07,5;UBERON:0002315,3.41e-07,5;UBERON:0000970,6.70e-07,9;UBERON:0000019,6.70e-07,9;UBERON:0000047,6.70e-07,9;UBERON:0010312,6.70e-07,9;UBERON:0004088,6.70e-07,9;UBERON:0002104,6.70e-07,9;UBERON:0001456,6.70e-07,9;UBERON:0003072,6.70e-07,9;UBERON:0004128,6.70e-07,9;UBERON:0003071,6.70e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,0,0.55994568650145,0,0,0,0,0,0,0,0.606949382578793,0,0,0,0,0,0,0,0.599200221036809,0.384218305321555,0,0.405017814995072,0,10.2834354385369,8.1721360152097,0.489963196859816,0.862609239164127,0,7.70811166995721,7.40586560894089,7.37311359629969,0.131886287730194,0.274462930807229,0.52091337055676,5.862842979029,7.31591393041184,7.02871939773326,3.83017161115768,4.55589378557129,0.372798891650601,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0,0,0,0,0,0.148442139064825,0,0,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,4.9772735491963,5.23616767033638,0.255457055208591,0,0,0,9.8861822007183,5.03250663100489,2.51308704225729,7.99591872884472,6.13717097592793,8.10373373782284,6.97637431191358,0.101839363850316,0,0,1.05220927943237,0,0.459804208866946,0.180062129805349,1.35634336052144,4.01415344992834,3.45907044769094,2.43624483855295,4.9153640440413,0,0.189106080167819,0.351902248327898,0.876782929710299,1.11218899690239,1.0447564995665,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,7.36014819974445,1.02904612379284,0,0,0,0.232236671860439,0.644337306610467,0.403367049246685,0.22237804384487,0.190225626112559,0,0.494096864172033,0,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.114248512609729,0,0,0.387904974335251,0.350679099451593,0.252946148497029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0.325929952884052,0.169745085775188,0.234690248288502,0,0,0,0.157635144106191,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,8.83028244932856,7.501547941901,0,0,0,0,0,0,0,0,0,0,0,13.1741739732941,0.141940085208269,0.712262414669021,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0,0,0,0.329098041204242,0,0,0,0,0,0.645857706783622,0.120625849856312,0.358117032009409,0.164140899745061,0.291480836629851,11.3109434226411,0,0.206386867963223,0,0,0,0,0,0,0,0,0,0.203319467126849,0.216010681643603,0.418176592028937,0.218362563746178,0,0.247960367176008,0.26175594198403,0.129614973291793,0,0,0.149516546043979,0,0.194451188344048,0.129159823477731,0.337912250981556,0.117357238645754,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3885110557024,4.14292712856459,2.29158205375759,4.81188910562325,6.85082519770642,3.0215755895588,6.75022500231806,4.95353323546643,3.62513927187364,5.1776031175182,0,0,0.170733605754134,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0.320919209591815,0,1.01391719956096,0.377252682772152,0.280924522409647,0.320125762024346,0.0574354689556133,0,0,0.192909220463705,0,0.441596760403192,0.342869252385415,0,0,0.290692833264657,0.0941093804153306,0.423073039458382,0.548783918618318,0.789209134313529,0.135804113845862,0,0.355905054372522,0.197008964751127,0.818462086339379,0.464810523557898,0.385813221962283,0.999242311751784,0,0.214871054048298,0.382576664137687,0.441182838239031,0.463735671240843 | |||
|short_description=p8@Sema4a | |||
}} |
Latest revision as of 19:49, 25 September 2015
Short description: | p8@Sema4a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Sema4a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -14bp_to_ENSMUST00000107532, ENSMUST00000166237, NM_001163489, uc008pvi.2_5end |
EntrezGene: | Sema4a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.04e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-07 | 23 |
raphe nuclei neuron | 1.46e-07 | 3 |
neuron of the substantia nigra | 3.34e-07 | 3 |