FFCP PHASE1:Mm9::chr3:78949834..78949852,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76089 | |EntrezGene=76089 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=E9QNQ4,Q6NXI4 | |UniProt=E9QNQ4,Q6NXI4 | ||
|association_with_transcript=-37bp_to_ENSMUST00000118340,NM_001099624,uc008pnm.1_5end | |association_with_transcript=-37bp_to_ENSMUST00000118340,NM_001099624,uc008pnm.1_5end | ||
|cluster_id=chr3:78949834..78949852,- | |||
|description=CAGE_peak_3_at_Rapgef2_5end | |description=CAGE_peak_3_at_Rapgef2_5end | ||
|id=chr3:78949834..78949852,- | |id=chr3:78949834..78949852,- | ||
|ontology_enrichment_celltype=CL:0000117!3.16e-17!23;CL:0000337!3.16e-17!23;CL:0000540!3.58e-13!33;CL:0000047!3.58e-13!33;CL:0000031!3.58e-13!33;CL:0000404!3.58e-13!33;CL:0002319!5.11e-10!43;CL:0000393!1.05e-09!39;CL:0000211!1.05e-09!39;CL:0000221!1.43e-09!44;CL:0000133!1.43e-09!44;CL:0000055!2.57e-07!50 | |ontology_enrichment_celltype=CL:0000117!3.16e-17!23;CL:0000337!3.16e-17!23;CL:0000540!3.58e-13!33;CL:0000047!3.58e-13!33;CL:0000031!3.58e-13!33;CL:0000404!3.58e-13!33;CL:0002319!5.11e-10!43;CL:0000393!1.05e-09!39;CL:0000211!1.05e-09!39;CL:0000221!1.43e-09!44;CL:0000133!1.43e-09!44;CL:0000055!2.57e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.74e-19,23;CL:0000337,1.74e-19,23;CL:0000540,5.87e-12,33;CL:0000047,5.87e-12,33;CL:0000031,5.87e-12,33;CL:0000404,5.87e-12,33;CL:0000393,2.45e-09,39;CL:0000211,2.45e-09,39;CL:0002319,5.15e-08,43;CL:0000221,1.01e-07,44;CL:0000133,1.01e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.97e-30!73;UBERON:0005743!6.97e-30!73;UBERON:0000073!2.09e-29!75;UBERON:0001016!2.09e-29!75;UBERON:0001049!1.29e-28!52;UBERON:0005068!1.29e-28!52;UBERON:0006241!1.29e-28!52;UBERON:0007135!1.29e-28!52;UBERON:0000955!1.70e-27!50;UBERON:0006238!1.70e-27!50;UBERON:0002616!1.89e-26!49;UBERON:0000033!2.42e-24!63;UBERON:0002020!8.49e-24!34;UBERON:0002346!1.15e-23!71;UBERON:0003075!1.15e-23!71;UBERON:0007284!1.15e-23!71;UBERON:0004121!2.78e-21!102;UBERON:0000924!2.78e-21!102;UBERON:0006601!2.78e-21!102;UBERON:0003080!3.06e-21!40;UBERON:0003056!5.28e-21!49;UBERON:0002780!2.83e-20!39;UBERON:0001890!2.83e-20!39;UBERON:0006240!2.83e-20!39;UBERON:0002791!8.30e-20!29;UBERON:0003528!8.30e-20!29;UBERON:0001893!8.30e-20!29;UBERON:0007811!8.31e-15!86;UBERON:0000956!3.64e-13!21;UBERON:0001869!3.64e-13!21;UBERON:0000203!3.64e-13!21;UBERON:0000153!4.73e-12!94;UBERON:0002619!3.91e-11!17;UBERON:0002021!2.19e-10!10;UBERON:0000411!2.19e-10!10;UBERON:0001950!2.19e-10!10;UBERON:0002420!6.00e-08!8;UBERON:0007245!6.00e-08!8;UBERON:0010009!6.00e-08!8;UBERON:0010011!6.00e-08!8;UBERON:0000454!6.00e-08!8;UBERON:0003076!8.64e-08!12;UBERON:0003057!8.64e-08!12 | |ontology_enrichment_uberon=UBERON:0001017!6.97e-30!73;UBERON:0005743!6.97e-30!73;UBERON:0000073!2.09e-29!75;UBERON:0001016!2.09e-29!75;UBERON:0001049!1.29e-28!52;UBERON:0005068!1.29e-28!52;UBERON:0006241!1.29e-28!52;UBERON:0007135!1.29e-28!52;UBERON:0000955!1.70e-27!50;UBERON:0006238!1.70e-27!50;UBERON:0002616!1.89e-26!49;UBERON:0000033!2.42e-24!63;UBERON:0002020!8.49e-24!34;UBERON:0002346!1.15e-23!71;UBERON:0003075!1.15e-23!71;UBERON:0007284!1.15e-23!71;UBERON:0004121!2.78e-21!102;UBERON:0000924!2.78e-21!102;UBERON:0006601!2.78e-21!102;UBERON:0003080!3.06e-21!40;UBERON:0003056!5.28e-21!49;UBERON:0002780!2.83e-20!39;UBERON:0001890!2.83e-20!39;UBERON:0006240!2.83e-20!39;UBERON:0002791!8.30e-20!29;UBERON:0003528!8.30e-20!29;UBERON:0001893!8.30e-20!29;UBERON:0007811!8.31e-15!86;UBERON:0000956!3.64e-13!21;UBERON:0001869!3.64e-13!21;UBERON:0000203!3.64e-13!21;UBERON:0000153!4.73e-12!94;UBERON:0002619!3.91e-11!17;UBERON:0002021!2.19e-10!10;UBERON:0000411!2.19e-10!10;UBERON:0001950!2.19e-10!10;UBERON:0002420!6.00e-08!8;UBERON:0007245!6.00e-08!8;UBERON:0010009!6.00e-08!8;UBERON:0010011!6.00e-08!8;UBERON:0000454!6.00e-08!8;UBERON:0003076!8.64e-08!12;UBERON:0003057!8.64e-08!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.85e-35,54;UBERON:0001049,7.38e-32,52;UBERON:0005068,7.38e-32,52;UBERON:0006241,7.38e-32,52;UBERON:0007135,7.38e-32,52;UBERON:0001017,2.10e-31,73;UBERON:0002020,8.18e-31,34;UBERON:0001016,3.06e-30,75;UBERON:0000955,3.63e-26,47;UBERON:0006238,3.63e-26,47;UBERON:0002616,1.03e-24,46;UBERON:0003528,1.56e-24,29;UBERON:0002791,1.56e-24,29;UBERON:0001893,1.56e-24,29;UBERON:0002346,6.82e-24,64;UBERON:0003075,6.82e-24,64;UBERON:0007284,6.82e-24,64;UBERON:0003080,1.00e-21,40;UBERON:0004121,2.56e-21,95;UBERON:0000924,2.56e-21,95;UBERON:0006601,2.56e-21,95;UBERON:0002780,2.32e-20,39;UBERON:0001890,2.32e-20,39;UBERON:0006240,2.32e-20,39;UBERON:0010371,1.17e-19,73;UBERON:0003056,2.75e-16,49;UBERON:0002619,5.94e-16,17;UBERON:0002021,6.09e-16,10;UBERON:0000411,6.09e-16,10;UBERON:0001950,6.09e-16,10;UBERON:0000956,2.36e-14,21;UBERON:0001869,2.36e-14,21;UBERON:0000203,2.36e-14,21;UBERON:0010314,1.73e-13,92;UBERON:0002420,5.66e-12,8;UBERON:0007245,5.66e-12,8;UBERON:0010009,5.66e-12,8;UBERON:0010011,5.66e-12,8;UBERON:0000454,5.66e-12,8;UBERON:0003076,1.45e-10,12;UBERON:0003057,1.45e-10,12;UBERON:0000025,5.27e-09,114;UBERON:0002240,1.40e-08,6;UBERON:0005174,1.40e-08,6;UBERON:0001137,1.40e-08,6;UBERON:0000369,2.77e-08,5;UBERON:0002435,2.77e-08,5;UBERON:0000204,2.77e-08,5;UBERON:0010082,2.77e-08,5;UBERON:0004111,8.41e-08,122;UBERON:0001948,1.68e-07,5;UBERON:0002315,1.68e-07,5;UBERON:0002950,8.30e-07,4;UBERON:0001891,8.30e-07,4;UBERON:0009616,8.30e-07,4;UBERON:0010286,8.30e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,3.23706337375356,8.99284664762456,5.70448263155561,0,0,0,0,0,0.299600110518405,0,0.622137673850866,0.540023753326763,0.420649922702764,2.85650984403804,3.53389665522582,0.857435594504678,1.15014565221884,1.83843757322004,13.2139057199266,4.85211884723713,6.14426133024974,3.16527090552465,6.58711033937349,3.64639359389732,3.35019598801657,5.6276261003168,6.26472815884921,4.12480019663135,6.83384067835694,4.10078780815661,0,0.0755715601067855,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,2.30391377494801,0,0,0,0,12.4326230706003,21.9600289352941,10.5549655774806,13.5582969749976,9.46147192122223,9.55825004973976,15.2506787283692,0,0,0,0.210441855886474,0,0,0,0.452114453507145,0.0680364991513279,0.896796041993948,0.281105173679186,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0,0,0,8.20130799400096,3.19004298375782,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,5.45872005958493,6.09500770279457,0,0,0.315508219416257,0.390438744296638,0,0,0,0,0,0.292255857911312,0.395287777946524,14.4594592389813,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0.356737635204141,0.493647061806363,0,0,0,0,0,0,0.0603129249281559,0,0,0,2.96680483216816,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0.0762068066549998,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,8.471277639256,11.0478056761722,13.7494923225455,6.01486138202907,10.9613203163303,11.3309084608455,9.45031500324528,8.10578165803597,5.89085131679466,8.80192529978094,0,0,0.170733605754134,0.243106717068294,0.419226325255965,1.83843508450014,1.11123363900808,1.03017528619447,0.962757628775446,1.01078884705519,0.760437899670719,0.565879024158229,0.655490552289177,0.960377286073039,0.689225627467359,1.90517476513229,1.27472758539341,0.38581844092741,0.824171801606613,1.47198920134397,1.02860775715625,0.887379030796687,0.715308569841963,1.16277133305863,1.31753132581463,1.18460451048347,0.73171189149109,2.36762740294059,1.62964936615034,1.68342681497322,0.474540072496697,0.985044823755635,1.22769312950907,0.929621047115796,0.192906610981141,2.74791635731741,1.16965804222704,1.28922632428979,0,0,0.231867835620421 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,3.23706337375356,8.99284664762456,5.70448263155561,0,0,0,0,0,0.299600110518405,0,0.622137673850866,0.540023753326763,0.420649922702764,2.85650984403804,3.53389665522582,0.857435594504678,1.15014565221884,1.83843757322004,13.2139057199266,4.85211884723713,6.14426133024974,3.16527090552465,6.58711033937349,3.64639359389732,3.35019598801657,5.6276261003168,6.26472815884921,4.12480019663135,6.83384067835694,4.10078780815661,0,0.0755715601067855,0,0,0,0,0,0,0.421333260395256,0.170430322578058,0,0,0,0,0,0,0.216491041011214,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04946557908083,2.30391377494801,0,0,0,0,12.4326230706003,21.9600289352941,10.5549655774806,13.5582969749976,9.46147192122223,9.55825004973976,15.2506787283692,0,0,0,0.210441855886474,0,0,0,0.452114453507145,0.0680364991513279,0.896796041993948,0.281105173679186,0.776110112217047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0,0,0.164167464079095,0,0,0,0,8.20130799400096,3.19004298375782,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0,0,0,0,0,0,5.45872005958493,6.09500770279457,0,0,0.315508219416257,0.390438744296638,0,0,0,0,0,0.292255857911312,0.395287777946524,14.4594592389813,0,0.178065603667255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0.177340233642274,0.356737635204141,0.493647061806363,0,0,0,0,0,0,0.0603129249281559,0,0,0,2.96680483216816,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0.0762068066549998,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,8.471277639256,11.0478056761722,13.7494923225455,6.01486138202907,10.9613203163303,11.3309084608455,9.45031500324528,8.10578165803597,5.89085131679466,8.80192529978094,0,0,0.170733605754134,0.243106717068294,0.419226325255965,1.83843508450014,1.11123363900808,1.03017528619447,0.962757628775446,1.01078884705519,0.760437899670719,0.565879024158229,0.655490552289177,0.960377286073039,0.689225627467359,1.90517476513229,1.27472758539341,0.38581844092741,0.824171801606613,1.47198920134397,1.02860775715625,0.887379030796687,0.715308569841963,1.16277133305863,1.31753132581463,1.18460451048347,0.73171189149109,2.36762740294059,1.62964936615034,1.68342681497322,0.474540072496697,0.985044823755635,1.22769312950907,0.929621047115796,0.192906610981141,2.74791635731741,1.16965804222704,1.28922632428979,0,0,0.231867835620421 | ||
|short_description=p3@Rapgef2 | |short_description=p3@Rapgef2 | ||
}} | }} |
Latest revision as of 17:07, 25 September 2015
Short description: | p3@Rapgef2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rapgef2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -37bp_to_ENSMUST00000118340, NM_001099624, uc008pnm.1_5end |
EntrezGene: | Rapgef2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.74e-19 | 23 |
neuroblast (sensu Vertebrata) | 1.74e-19 | 23 |
neuron | 5.87e-12 | 33 |
neuronal stem cell | 5.87e-12 | 33 |
neuroblast | 5.87e-12 | 33 |
electrically signaling cell | 5.87e-12 | 33 |
electrically responsive cell | 2.45e-09 | 39 |
electrically active cell | 2.45e-09 | 39 |
neural cell | 5.15e-08 | 43 |
ectodermal cell | 1.01e-07 | 44 |
neurectodermal cell | 1.01e-07 | 44 |