FFCP PHASE1:Mm9::chr8:67653453..67653471,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:67653453..67653471,-
|short_description=p1@BC030870
|description=CAGE_peak_1_at_BC030870_5end
|association_with_transcript=-17bp_to_NR_033217,uc009lvi.2_5e...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=407795 | |EntrezGene=407795 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_NR_033217,uc009lvi.2_5end | |||
|cluster_id=chr8:67653453..67653471,- | |||
|description=CAGE_peak_1_at_BC030870_5end | |||
|id=chr8:67653453..67653471,- | |||
|ontology_enrichment_celltype=CL:0002563!5.40e-09!9;CL:0002251!5.40e-09!9;CL:0002076!1.48e-07!15;CL:0000239!7.09e-07!6;CL:0000677!7.09e-07!6;CL:0000212!7.09e-07!6;CL:0000584!7.09e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.48e-15,9;CL:0002251,3.48e-15,9;CL:0002076,6.66e-12,15;CL:0000239,2.58e-11,6;CL:0000677,2.58e-11,6;CL:0000584,2.58e-11,6;CL:0000066,9.51e-11,25;CL:0000075,1.50e-09,7;CL:0000223,2.82e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.68e-26!59;UBERON:0000160!4.56e-24!43;UBERON:0001007!2.12e-18!128;UBERON:0001555!2.12e-18!128;UBERON:0007026!2.12e-18!128;UBERON:0004119!1.00e-17!130;UBERON:0000925!1.00e-17!130;UBERON:0006595!1.00e-17!130;UBERON:0004921!6.67e-17!126;UBERON:0004185!6.67e-17!126;UBERON:0000344!1.51e-14!15;UBERON:0001242!1.27e-12!13;UBERON:0000060!1.27e-12!13;UBERON:0001262!1.27e-12!13;UBERON:0004786!1.27e-12!13;UBERON:0003350!5.40e-09!9;UBERON:0004808!5.40e-09!9;UBERON:0001277!5.40e-09!9;UBERON:0005178!9.17e-09!17;UBERON:0005181!9.17e-09!17;UBERON:0002224!9.17e-09!17;UBERON:0000915!9.17e-09!17;UBERON:0008947!9.17e-09!17;UBERON:0003258!9.17e-09!17;UBERON:0004923!2.10e-08!24;UBERON:0002048!3.89e-07!14;UBERON:0000117!3.89e-07!14;UBERON:0000171!3.89e-07!14;UBERON:0000170!3.89e-07!14;UBERON:0005597!3.89e-07!14;UBERON:0000118!3.89e-07!14;UBERON:0000485!9.07e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.62e-43,31;UBERON:0005409,9.37e-41,47;UBERON:0000344,2.22e-25,15;UBERON:0001242,7.67e-22,13;UBERON:0001262,7.67e-22,13;UBERON:0004786,7.67e-22,13;UBERON:0001007,6.34e-21,116;UBERON:0001555,6.34e-21,116;UBERON:0007026,6.34e-21,116;UBERON:0004119,2.25e-20,118;UBERON:0000925,2.25e-20,118;UBERON:0006595,2.25e-20,118;UBERON:0004921,1.10e-18,114;UBERON:0003350,3.48e-15,9;UBERON:0004808,3.48e-15,9;UBERON:0001277,3.48e-15,9;UBERON:0004923,3.08e-14,24;UBERON:0000485,4.85e-12,11;UBERON:0002108,7.77e-08,4 | |||
|phase1_expression=0,46.413729216035,57.7849034024711,55.6534148804567,45.0806156951712,20.4812711732506,18.6890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,60.7971206614945,47.4877211809042,47.6612530215467,40.9223896351121,42.8787753044919,53.5866042866974,36.7963989449499,17.7384408524244,0,0,0,8.95440021228951,6.98185510505668,7.75843553797003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37066608316204,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,2.02209778005913,8.90634261808668,0,0,0,0,0,0,0,0.251333182659351,0,0,0,0,0,0,7.45567044872489,0,0,32.6985030666997,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0,0,158.931434615207,45.4854974661296,0.639864751605702,0.464473343720877,3.09281907173024,8.67239155880373,9.33987784148455,15.978952593455,51.2491386468073,17.6227881554692,11.3100843960121,9.15199771389294,8.57841983324129,30.5598598942435,52.305408069676,62.92864234838,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0.202860121388503,0,0.50925170356284,0,0.972811360650212,0.274561413188081,0,0.744281895337007,0,0,0,0,1.10851914099963,0.37898282354097,0.162964976442026,0.678980343100753,0.704070744865506,0.167506257441816,0.714130922658041,1.17080188714679,1.41871629695572,0.221464689648775,1.11618338060241,1.3109065177259,0.863424909329478,1.88043776155965,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0.494910368917606,0,0,0.604647113929502,0.565815239267694,0.295301892880773,0.307435147943927,3.6179961043551,0.727067458955011,0.712994756769443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6503136234269,0,0,0.206386867963223,0.370389054739423,0,0,0,0,0,0,3.81868247206045,0,0.813277868507395,2.91614420218863,0.627264888043406,1.9652630737156,2.02296519577231,1.81837602595739,4.18809507174447,8.03612834409116,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0.915758121336325,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0.367687016900028,0.888986911206461,0.206035057238894,0,0.758091635291392,0,0.188626341386076,0.561849044819294,0.832326981263301,0.402048282689293,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,1.03039244094078,1.02860775715625,0.532427418478012,0.953744759789284,1.16277133305863,0.470546902076653,0.507687647350059,0.548783918618318,0.789209134313529,0.679020569229309,0,0.711810108745045,0.492522411877817,1.22769312950907,0.929621047115796,0.578719832943424,0,0.701794825336225,0.859484216193193,0,0.220591419119515,0 | |phase1_expression=0,46.413729216035,57.7849034024711,55.6534148804567,45.0806156951712,20.4812711732506,18.6890112476421,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,60.7971206614945,47.4877211809042,47.6612530215467,40.9223896351121,42.8787753044919,53.5866042866974,36.7963989449499,17.7384408524244,0,0,0,8.95440021228951,6.98185510505668,7.75843553797003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37066608316204,0,0,0,0,0,0,0,0.865964164044856,1.01343946190039,2.02209778005913,8.90634261808668,0,0,0,0,0,0,0,0.251333182659351,0,0,0,0,0,0,7.45567044872489,0,0,32.6985030666997,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154267112887378,0,0.268273401399619,0,0,0,0,0,0,0,0,0,158.931434615207,45.4854974661296,0.639864751605702,0.464473343720877,3.09281907173024,8.67239155880373,9.33987784148455,15.978952593455,51.2491386468073,17.6227881554692,11.3100843960121,9.15199771389294,8.57841983324129,30.5598598942435,52.305408069676,62.92864234838,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0,0,0,0,0.202860121388503,0,0.50925170356284,0,0.972811360650212,0.274561413188081,0,0.744281895337007,0,0,0,0,1.10851914099963,0.37898282354097,0.162964976442026,0.678980343100753,0.704070744865506,0.167506257441816,0.714130922658041,1.17080188714679,1.41871629695572,0.221464689648775,1.11618338060241,1.3109065177259,0.863424909329478,1.88043776155965,0,0,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283880170416537,0,0,0.494910368917606,0,0,0.604647113929502,0.565815239267694,0.295301892880773,0.307435147943927,3.6179961043551,0.727067458955011,0.712994756769443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6503136234269,0,0,0.206386867963223,0.370389054739423,0,0,0,0,0,0,3.81868247206045,0,0.813277868507395,2.91614420218863,0.627264888043406,1.9652630737156,2.02296519577231,1.81837602595739,4.18809507174447,8.03612834409116,0.621339313086926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0.915758121336325,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0.209613162627982,0.367687016900028,0.888986911206461,0.206035057238894,0,0.758091635291392,0,0.188626341386076,0.561849044819294,0.832326981263301,0.402048282689293,0.476293691283074,0.463537303779422,0.77163688185482,0.412085900803307,1.03039244094078,1.02860775715625,0.532427418478012,0.953744759789284,1.16277133305863,0.470546902076653,0.507687647350059,0.548783918618318,0.789209134313529,0.679020569229309,0,0.711810108745045,0.492522411877817,1.22769312950907,0.929621047115796,0.578719832943424,0,0.701794825336225,0.859484216193193,0,0.220591419119515,0 | ||
|short_description=p1@BC030870 | |||
}} | }} |
Latest revision as of 16:17, 25 September 2015
Short description: | p1@BC030870 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC030870_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -17bp_to_NR_033217, uc009lvi.2_5end |
EntrezGene: | BC030870 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.48e-15 | 9 |
epithelial cell of alimentary canal | 3.48e-15 | 9 |
endo-epithelial cell | 6.66e-12 | 15 |
brush border epithelial cell | 2.58e-11 | 6 |
gut absorptive cell | 2.58e-11 | 6 |
enterocyte | 2.58e-11 | 6 |
epithelial cell | 9.51e-11 | 25 |
columnar/cuboidal epithelial cell | 1.50e-09 | 7 |
endodermal cell | 2.82e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.62e-43 | 31 |
gastrointestinal system | 9.37e-41 | 47 |
mucosa | 2.22e-25 | 15 |
intestinal mucosa | 7.67e-22 | 13 |
wall of intestine | 7.67e-22 | 13 |
gastrointestinal system mucosa | 7.67e-22 | 13 |
digestive system | 6.34e-21 | 116 |
digestive tract | 6.34e-21 | 116 |
primitive gut | 6.34e-21 | 116 |
endoderm-derived structure | 2.25e-20 | 118 |
endoderm | 2.25e-20 | 118 |
presumptive endoderm | 2.25e-20 | 118 |
subdivision of digestive tract | 1.10e-18 | 114 |
epithelium of mucosa | 3.48e-15 | 9 |
gastrointestinal system epithelium | 3.48e-15 | 9 |
intestinal epithelium | 3.48e-15 | 9 |
organ component layer | 3.08e-14 | 24 |
simple columnar epithelium | 4.85e-12 | 11 |
small intestine | 7.77e-08 | 4 |