FFCP PHASE1:Mm9::chr3:54496805..54496814,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=56790|HGNC=|UniProt=Q7TT00|association_with_transcript=-210bp_to_uc008pfl.1,uc008pfm.1_5end|description=CAGE_peak_5_at_Fam48a_5end|id=chr3:54496805..54496814,+|ontology_enrichment_celltype=CL:0000542!4.79e-08!13;CL:0000051!4.79e-08!13;CL:0000838!1.07e-07!12;CL:0000084!2.62e-07!11;CL:0000827!2.62e-07!11|ontology_enrichment_celltype_v019_2=CL:0000542,8.48e-13,13;CL:0000051,8.48e-13,13;CL:0000838,3.40e-12,12;CL:0000084,1.59e-11,11;CL:0000827,1.59e-11,11;CL:0000791,1.92e-09,9;CL:0000789,1.92e-09,9;CL:0002420,1.92e-09,9;CL:0002419,1.92e-09,9;CL:0000790,1.92e-09,9;CL:0000738,8.08e-09,17;CL:0002087,8.08e-09,17;CL:0000624,2.44e-08,8;CL:0000988,2.67e-08,32;CL:0002032,2.67e-08,32;CL:0000037,2.67e-08,32;CL:0000837,2.67e-08,32;CL:0002031,8.49e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.24e-07,23;UBERON:0000974,1.24e-07,23;UBERON:0004807,1.24e-07,23;UBERON:0005058,1.24e-07,23;UBERON:0003351,1.24e-07,23;UBERON:0009113,1.24e-07,23;UBERON:0003295,1.24e-07,23;UBERON:0009722,1.24e-07,23;UBERON:0005562,1.24e-07,23;UBERON:0007690,1.24e-07,23;UBERON:0006562,3.93e-07,24;UBERON:0003408,3.93e-07,24;UBERON:0001557,3.93e-07,24;UBERON:0001042,3.93e-07,24;UBERON:0008814,3.93e-07,24;UBERON:0009145,3.93e-07,24;UBERON:0004177,4.83e-07,29;UBERON:0005057,4.83e-07,29;UBERON:0000077,5.00e-07,35;UBERON:0000072,9.34e-07,27|phase1_expression=1.28119077683835,0,0,0.30246421130683,1.00179145989269,0.671517087647559,0.700837921786577,1.80772652818207,2.956563165185,2.80877431586392,1.71217968225505,1.43589886191606,1.88320802924326,1.22388563386596,1.33243904726265,0.809901069559304,0.699561878128147,1.26184866143295,2.60517423850904,1.27316895539409,2.55129870453209,2.48227378002213,3.6567970479451,0,0.91763712426868,0,0,1.07735616342945,0.380046838912748,0,0.886922042621219,0,0,0,0.866554859253824,0.332469290716985,0.612508068787107,2.92972141515835,0.7813353445238,4.18818995179039,3.52938892818609,2.04913645487534,2.91306211818692,0,0.405507724878058,0.550640256485045,1.56478268869608,0.218025156380447,0.659058548203415,0.194429899074283,0.699932108126813,0,1.34226084846189,2.17608642603403,3.6970317905671,0.257259436035947,0.286533439938757,0.515672092277442,0.202316460859598,0,0,0.677689064138264,0.889294796111139,0,0,0,0,0.384218305321555,0.414758449233911,0.270011876663381,0.420649922702764,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0.274462930807229,0.52091337055676,0,0.56276261003168,0.15279824777681,0.589257170947335,0.142371680799103,0,0.757261933331841,0.226714680320357,0.579728977403356,0,1.3599426674155,0,0,0.448026887097336,1.12355536105401,0.340860645156116,0,0.35333957451034,0.704217098883403,0,0,0,0.649473123033642,1.26679932737549,0,0.45673551887624,3.88406825470758,0.148442139064825,1.04091196059682,0.304465478312141,0,0.150722640552623,0.352766121407114,0.251333182659351,1.48316980640624,0.578397427679647,1.76922110389975,0.647067399789637,0.220841518460394,0.484875253135222,0,0.292780797011547,0.41889341362691,2.04365644166873,1.31796636956512,0,1.01656181658452,0,0,0.125654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0,0.509196819251581,0.995255764880744,1.51633655060205,0,0.520481771850815,0.919608417733892,0.900310649026746,0.452114453507145,0.612328492361951,0.2562274405697,0.562210347358373,0,0.862271971731369,1.32374256117473,1.05570674498369,0.657587197282725,0.278047249225598,0,0.823128545631774,0.398068533636986,0.702213187313235,0.51469581422943,1.13665399758237,1.03562886267751,0.938104239924385,0.540186184383045,0.473489471170421,0,0.771335564436891,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0,0.162137619091711,0.146199987425332,0.439100230582101,0.268412837520744,0.210289948564127,0,0.660837565967596,0.264450566663544,1.2797295032114,1.16118335930219,1.03093969057675,0,0.667134131534611,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.795825888164603,0.58489226135736,1.79763881730844,0.432276099749388,0.398282546508734,0.569003702859245,0.913988100877831,1.1270773567308,0.203651327845314,0.969762435838129,0.771494018793504,1.07502113111237,0.442830443938806,0.470996183524124,0.493588655687202,0.296452627087149,1.16791574001266,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.50925170356284,1.43848068725405,0.324270453550071,0.823684239564244,0,0,1.24815069245824,0.505157755894224,0.717589654087649,0.964887042726734,0.369506380333209,1.13694847062291,0.814824882210129,0.169745085775188,0.469380496577004,0.502518772325447,0.714130922658041,1.17080188714679,0.788175720530955,0.8858587585951,0.478364305972461,0.163863314715738,1.55416483679306,0.867894351489069,0,0.54390568381871,0,1.10374698521893,0.160550589987792,0,0.655739781506702,0.504941854408746,1.57754109708128,1.95219372148319,0.430846795465598,0.955875191810208,1.11399337041197,0.849229592366497,0.404810701674894,0.584511715822624,1.18586333383957,0.321321316421807,0.567760340833074,0.534196811001766,0.162886959353576,0.659880491890142,1.32745138339963,0.728341908464944,0.604647113929502,0.754420319023592,0.590603785761546,1.22974059177571,0,0,0.712994756769443,0.948110273807448,0,1.03135543248187,0.680879211507576,0.540183282093931,0.776152102696527,1.07168517515796,2.12808280370728,0.356737635204141,1.64549020602121,0.913394847343798,6.33613611772018,4.02480934641258,0,1.15420377059036,0.807322133479528,0.663442174209714,0.477489376012546,1.14898629821543,1.1659233465194,0,1.70870880797853,0.619160603889667,0.185194527369712,0.941842285023455,1.50363650493128,0.915112692826091,3.39956859987711,2.79902904647316,4.28419918793714,0,0.949007980743406,0.813277868507395,0.648032044930808,0,0.436725127492355,0.269728692769641,0.41326727862668,0.26175594198403,0.259229946583586,0.621339313086926,9.01908701894705,0.897099276263873,0.330916980914195,0.777804753376191,0.387479470433193,0.337912250981556,0.117357238645754,1.69265700297135,2.9360616439199,7.73069186643219,8.06484017522023,0,1.01362607645082,0.924398614483445,1.16928740680016,2.14832034800978,1.19208812868759,1.08175904567972,0.738447635872886,1.71642964911851,0.990688486514998,1.61321896218945,1.26695244961678,1.53938946624527,1.98690733708667,0.226730383615211,0.887943813496259,1.16628013592318,2.01461539636894,0,1.12609485270709,0.549454872801795,0.214368379079066,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0.755393897389701,0,0,0,0,0.518936737920883,0.798049746802062,0.682934423016537,0.972426868273176,0.209613162627982,0.183843508450014,0.666740183404846,0.206035057238894,1.28367683836726,0.252697211763798,0.25347929989024,0.754505365544305,0.280924522409647,0.320125762024346,0.402048282689293,1.90517476513229,0.463537303779422,0.38581844092741,0,0.294397840268795,0,0.354951612318675,0.953744759789284,1.0174249164263,0.470546902076653,0.507687647350059,0,0.526139422875686,0.543216455383447,0,0.949080144993393,0.591026894253381,0.818462086339379,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.765153328275374,0.441182838239031,0.231867835620421|short_description=p5@Fam48a}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=56790 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q7TT00 | |||
|association_with_transcript=-210bp_to_uc008pfl.1,uc008pfm.1_5end | |||
|cluster_id=chr3:54496805..54496814,+ | |||
|description=CAGE_peak_5_at_Fam48a_5end | |||
|id=chr3:54496805..54496814,+ | |||
|ontology_enrichment_celltype=CL:0000542!4.79e-08!13;CL:0000051!4.79e-08!13;CL:0000838!1.07e-07!12;CL:0000084!2.62e-07!11;CL:0000827!2.62e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,8.48e-13,13;CL:0000051,8.48e-13,13;CL:0000838,3.40e-12,12;CL:0000084,1.59e-11,11;CL:0000827,1.59e-11,11;CL:0000791,1.92e-09,9;CL:0000789,1.92e-09,9;CL:0002420,1.92e-09,9;CL:0002419,1.92e-09,9;CL:0000790,1.92e-09,9;CL:0000738,8.08e-09,17;CL:0002087,8.08e-09,17;CL:0000624,2.44e-08,8;CL:0000988,2.67e-08,32;CL:0002032,2.67e-08,32;CL:0000037,2.67e-08,32;CL:0000837,2.67e-08,32;CL:0002031,8.49e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.24e-07,23;UBERON:0000974,1.24e-07,23;UBERON:0004807,1.24e-07,23;UBERON:0005058,1.24e-07,23;UBERON:0003351,1.24e-07,23;UBERON:0009113,1.24e-07,23;UBERON:0003295,1.24e-07,23;UBERON:0009722,1.24e-07,23;UBERON:0005562,1.24e-07,23;UBERON:0007690,1.24e-07,23;UBERON:0006562,3.93e-07,24;UBERON:0003408,3.93e-07,24;UBERON:0001557,3.93e-07,24;UBERON:0001042,3.93e-07,24;UBERON:0008814,3.93e-07,24;UBERON:0009145,3.93e-07,24;UBERON:0004177,4.83e-07,29;UBERON:0005057,4.83e-07,29;UBERON:0000077,5.00e-07,35;UBERON:0000072,9.34e-07,27 | |||
|phase1_expression=1.28119077683835,0,0,0.30246421130683,1.00179145989269,0.671517087647559,0.700837921786577,1.80772652818207,2.956563165185,2.80877431586392,1.71217968225505,1.43589886191606,1.88320802924326,1.22388563386596,1.33243904726265,0.809901069559304,0.699561878128147,1.26184866143295,2.60517423850904,1.27316895539409,2.55129870453209,2.48227378002213,3.6567970479451,0,0.91763712426868,0,0,1.07735616342945,0.380046838912748,0,0.886922042621219,0,0,0,0.866554859253824,0.332469290716985,0.612508068787107,2.92972141515835,0.7813353445238,4.18818995179039,3.52938892818609,2.04913645487534,2.91306211818692,0,0.405507724878058,0.550640256485045,1.56478268869608,0.218025156380447,0.659058548203415,0.194429899074283,0.699932108126813,0,1.34226084846189,2.17608642603403,3.6970317905671,0.257259436035947,0.286533439938757,0.515672092277442,0.202316460859598,0,0,0.677689064138264,0.889294796111139,0,0,0,0,0.384218305321555,0.414758449233911,0.270011876663381,0.420649922702764,0.285650984403804,0.220868540951614,0,0.0958454710182364,0,0,0.127687338085188,0.307213066512487,0.131886287730194,0.274462930807229,0.52091337055676,0,0.56276261003168,0.15279824777681,0.589257170947335,0.142371680799103,0,0.757261933331841,0.226714680320357,0.579728977403356,0,1.3599426674155,0,0,0.448026887097336,1.12355536105401,0.340860645156116,0,0.35333957451034,0.704217098883403,0,0,0,0.649473123033642,1.26679932737549,0,0.45673551887624,3.88406825470758,0.148442139064825,1.04091196059682,0.304465478312141,0,0.150722640552623,0.352766121407114,0.251333182659351,1.48316980640624,0.578397427679647,1.76922110389975,0.647067399789637,0.220841518460394,0.484875253135222,0,0.292780797011547,0.41889341362691,2.04365644166873,1.31796636956512,0,1.01656181658452,0,0,0.125654352112864,0.173824320192276,0.255715457330331,0.20778804455956,0,0.509196819251581,0.995255764880744,1.51633655060205,0,0.520481771850815,0.919608417733892,0.900310649026746,0.452114453507145,0.612328492361951,0.2562274405697,0.562210347358373,0,0.862271971731369,1.32374256117473,1.05570674498369,0.657587197282725,0.278047249225598,0,0.823128545631774,0.398068533636986,0.702213187313235,0.51469581422943,1.13665399758237,1.03562886267751,0.938104239924385,0.540186184383045,0.473489471170421,0,0.771335564436891,0.232533944750408,0.268273401399619,0.350296027101508,0.329119699826961,0,0.162137619091711,0.146199987425332,0.439100230582101,0.268412837520744,0.210289948564127,0,0.660837565967596,0.264450566663544,1.2797295032114,1.16118335930219,1.03093969057675,0,0.667134131534611,0.380451252225118,0.474529061544512,0.164698954724011,0.251335208800269,0.795825888164603,0.58489226135736,1.79763881730844,0.432276099749388,0.398282546508734,0.569003702859245,0.913988100877831,1.1270773567308,0.203651327845314,0.969762435838129,0.771494018793504,1.07502113111237,0.442830443938806,0.470996183524124,0.493588655687202,0.296452627087149,1.16791574001266,0.393117990226406,0.449724224769707,0.608580364165509,0.482354319504834,0.50925170356284,1.43848068725405,0.324270453550071,0.823684239564244,0,0,1.24815069245824,0.505157755894224,0.717589654087649,0.964887042726734,0.369506380333209,1.13694847062291,0.814824882210129,0.169745085775188,0.469380496577004,0.502518772325447,0.714130922658041,1.17080188714679,0.788175720530955,0.8858587585951,0.478364305972461,0.163863314715738,1.55416483679306,0.867894351489069,0,0.54390568381871,0,1.10374698521893,0.160550589987792,0,0.655739781506702,0.504941854408746,1.57754109708128,1.95219372148319,0.430846795465598,0.955875191810208,1.11399337041197,0.849229592366497,0.404810701674894,0.584511715822624,1.18586333383957,0.321321316421807,0.567760340833074,0.534196811001766,0.162886959353576,0.659880491890142,1.32745138339963,0.728341908464944,0.604647113929502,0.754420319023592,0.590603785761546,1.22974059177571,0,0,0.712994756769443,0.948110273807448,0,1.03135543248187,0.680879211507576,0.540183282093931,0.776152102696527,1.07168517515796,2.12808280370728,0.356737635204141,1.64549020602121,0.913394847343798,6.33613611772018,4.02480934641258,0,1.15420377059036,0.807322133479528,0.663442174209714,0.477489376012546,1.14898629821543,1.1659233465194,0,1.70870880797853,0.619160603889667,0.185194527369712,0.941842285023455,1.50363650493128,0.915112692826091,3.39956859987711,2.79902904647316,4.28419918793714,0,0.949007980743406,0.813277868507395,0.648032044930808,0,0.436725127492355,0.269728692769641,0.41326727862668,0.26175594198403,0.259229946583586,0.621339313086926,9.01908701894705,0.897099276263873,0.330916980914195,0.777804753376191,0.387479470433193,0.337912250981556,0.117357238645754,1.69265700297135,2.9360616439199,7.73069186643219,8.06484017522023,0,1.01362607645082,0.924398614483445,1.16928740680016,2.14832034800978,1.19208812868759,1.08175904567972,0.738447635872886,1.71642964911851,0.990688486514998,1.61321896218945,1.26695244961678,1.53938946624527,1.98690733708667,0.226730383615211,0.887943813496259,1.16628013592318,2.01461539636894,0,1.12609485270709,0.549454872801795,0.214368379079066,0,0,0.460325236507177,0.572895513439397,0.171853182343688,0,0.755393897389701,0,0,0,0,0.518936737920883,0.798049746802062,0.682934423016537,0.972426868273176,0.209613162627982,0.183843508450014,0.666740183404846,0.206035057238894,1.28367683836726,0.252697211763798,0.25347929989024,0.754505365544305,0.280924522409647,0.320125762024346,0.402048282689293,1.90517476513229,0.463537303779422,0.38581844092741,0,0.294397840268795,0,0.354951612318675,0.953744759789284,1.0174249164263,0.470546902076653,0.507687647350059,0,0.526139422875686,0.543216455383447,0,0.949080144993393,0.591026894253381,0.818462086339379,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0.429742108096597,0.765153328275374,0.441182838239031,0.231867835620421 | |||
|short_description=p5@Fam48a | |||
}} |
Latest revision as of 14:25, 25 September 2015
Short description: | p5@Fam48a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Fam48a_5end |
Coexpression cluster: | NA |
Association with transcript: | -210bp_to_uc008pfl.1, uc008pfm.1_5end |
EntrezGene: | Fam48a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 8.48e-13 | 13 |
common lymphoid progenitor | 8.48e-13 | 13 |
lymphoid lineage restricted progenitor cell | 3.40e-12 | 12 |
T cell | 1.59e-11 | 11 |
pro-T cell | 1.59e-11 | 11 |
mature alpha-beta T cell | 1.92e-09 | 9 |
alpha-beta T cell | 1.92e-09 | 9 |
immature T cell | 1.92e-09 | 9 |
mature T cell | 1.92e-09 | 9 |
immature alpha-beta T cell | 1.92e-09 | 9 |
leukocyte | 8.08e-09 | 17 |
nongranular leukocyte | 8.08e-09 | 17 |
CD4-positive, alpha-beta T cell | 2.44e-08 | 8 |
hematopoietic cell | 2.67e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.67e-08 | 32 |
hematopoietic stem cell | 2.67e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.67e-08 | 32 |
hematopoietic lineage restricted progenitor cell | 8.49e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.24e-07 | 23 |
neck | 1.24e-07 | 23 |
respiratory system epithelium | 1.24e-07 | 23 |
hemolymphoid system gland | 1.24e-07 | 23 |
pharyngeal epithelium | 1.24e-07 | 23 |
thymic region | 1.24e-07 | 23 |
pharyngeal gland | 1.24e-07 | 23 |
entire pharyngeal arch endoderm | 1.24e-07 | 23 |
thymus primordium | 1.24e-07 | 23 |
early pharyngeal endoderm | 1.24e-07 | 23 |
pharynx | 3.93e-07 | 24 |
gland of gut | 3.93e-07 | 24 |
upper respiratory tract | 3.93e-07 | 24 |
chordate pharynx | 3.93e-07 | 24 |
pharyngeal arch system | 3.93e-07 | 24 |
pharyngeal region of foregut | 3.93e-07 | 24 |
hemopoietic organ | 4.83e-07 | 29 |
immune organ | 4.83e-07 | 29 |
mixed endoderm/mesoderm-derived structure | 5.00e-07 | 35 |
segment of respiratory tract | 9.34e-07 | 27 |