FFCP PHASE1:Hg19::chr16:2390704..2390762,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:2390704..2390762,- to FFCP PHASE1:Hg19::chr16:2390704..2390762,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=21 | |EntrezGene=21 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33 | |HGNC=33 | ||
|TSSclassifier=strong | |||
|UniProt=Q4LE27,Q6P5P9,Q99758 | |UniProt=Q4LE27,Q6P5P9,Q99758 | ||
|association_with_transcript=0bp_to_ENST00000382381,NM_001089,uc002cpy.1,uc010bsk.1,uc010bsl.1_5end | |||
|cluster_id=chr16:2390704..2390762,- | |||
|coexpression_cluster_id=C2367 | |||
|description=CAGE_peak_1_at_ABCA3_5end | |||
|id=chr16:2390704..2390762,- | |||
|ontology_enrichment_celltype=CL:0000213!3.42e-12!57;CL:0000215!3.42e-12!57;CL:0002078!5.80e-12!44;CL:0002139!6.63e-12!24;CL:0000115!1.63e-11!35;CL:0000071!1.05e-09!18;CL:0002546!1.05e-09!18;CL:1000497!7.74e-07!18;CL:0002518!7.74e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.44e-12;24!CL:0000115;2.95e-10;36!CL:0000071;4.69e-10;18!CL:0002078;1.21e-08;45!CL:1000497;6.65e-08;17!CL:0002518;6.65e-08;17!CL:0000213;1.46e-07;58!CL:0000215;1.46e-07;58!CL:1000449;3.33e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,5.04e-13,58;CL:0000215,5.04e-13,58;CL:0002078,7.82e-13,45;CL:0000115,2.20e-12,36;CL:0002139,2.77e-12,24;CL:0000071,5.26e-10,18;CL:0002546,5.26e-10,18;CL:1000497,6.83e-08,17;CL:0002518,6.83e-08,17;CL:1000449,3.46e-07,15 | |||
|ontology_enrichment_development_v019=CL:0002546;4.69e-10;18!UBERON:0006601;5.84e-09;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.45e-32!115;UBERON:0005743!6.34e-30!86;UBERON:0000073!1.68e-29!94;UBERON:0001016!1.68e-29!94;UBERON:0001049!4.55e-29!57;UBERON:0005068!4.55e-29!57;UBERON:0006241!4.55e-29!57;UBERON:0007135!4.55e-29!57;UBERON:0001017!1.50e-28!82;UBERON:0003075!4.38e-28!86;UBERON:0007284!4.38e-28!86;UBERON:0002346!5.09e-28!90;UBERON:0000955!6.81e-24!69;UBERON:0006238!6.81e-24!69;UBERON:0002616!5.85e-23!59;UBERON:0000025!6.09e-23!194;UBERON:0003080!3.17e-22!42;UBERON:0002780!5.54e-22!41;UBERON:0001890!5.54e-22!41;UBERON:0006240!5.54e-22!41;UBERON:0003056!4.59e-20!61;UBERON:0001893!2.06e-19!34;UBERON:0004111!2.27e-19!241;UBERON:0002020!3.00e-19!34;UBERON:0003528!3.00e-19!34;UBERON:0000477!6.20e-19!286;UBERON:0002791!9.68e-19!33;UBERON:0001869!2.40e-18!32;UBERON:0000956!6.36e-15!25;UBERON:0000203!6.36e-15!25;UBERON:0002619!1.99e-14!22;UBERON:0000153!6.36e-14!129;UBERON:0007811!6.36e-14!129;UBERON:0000033!1.99e-13!123;UBERON:0001950!2.31e-13!20;UBERON:0000924!5.95e-13!173;UBERON:0006601!5.95e-13!173;UBERON:0004121!1.16e-12!169;UBERON:0000483!3.94e-12!309;UBERON:0000119!5.85e-12!312;UBERON:0000064!5.96e-11!219;UBERON:0000489!8.40e-10!32;UBERON:0001986!1.05e-09!18;UBERON:0004638!1.05e-09!18;UBERON:0004852!1.05e-09!18;UBERON:0002113!2.89e-09!27;UBERON:0003918!2.89e-09!27;UBERON:0005095!2.89e-09!27;UBERON:0007687!2.89e-09!27;UBERON:0000487!5.65e-09!22;UBERON:0006914!4.85e-08!25;UBERON:0003076!5.60e-08!15;UBERON:0003057!5.60e-08!15;UBERON:0000481!9.80e-08!347;UBERON:0004732!6.70e-07!13;UBERON:0003887!9.59e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;2.35e-17;34!UBERON:0001869;3.56e-17;32!UBERON:0003528;4.16e-17;34!UBERON:0002020;4.16e-17;34!UBERON:0002791;5.78e-17;32!UBERON:0002780;2.03e-16;41!UBERON:0001890;2.03e-16;41!UBERON:0000073;2.97e-16;53!UBERON:0002616;2.97e-16;53!UBERON:0000956;2.17e-15;25!UBERON:0000203;2.17e-15;25!UBERON:0002619;6.65e-15;22!UBERON:0001950;8.45e-14;20!UBERON:0001017;1.11e-11;75!UBERON:0000955;2.85e-11;68!UBERON:0001016;4.83e-11;83!UBERON:0000489;1.32e-10;29!UBERON:0004638;4.69e-10;18!UBERON:0001986;4.69e-10;18!UBERON:0004852;4.69e-10;18!UBERON:0002113;6.34e-10;24!UBERON:0011143;6.34e-10;24!UBERON:0007023;1.10e-09;114!UBERON:0000487;1.91e-09;22!UBERON:0006914;2.01e-08;25!UBERON:0006555;3.33e-07;15!UBERON:0004819;3.33e-07;15!UBERON:0001285;3.33e-07;15!UBERON:0007684;3.33e-07;15!UBERON:0004732;4.14e-07;13!UBERON:0000490;9.60e-07;33 | |||
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| ||
|short_description=p1@ABCA3 | |||
}} | }} |
Latest revision as of 06:49, 25 September 2015
Short description: | p1@ABCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA3_5end |
Coexpression cluster: | C2367_occipital_temporal_brain_postcentral_parietal_paracentral_insula |
Association with transcript: | 0bp_to_ENST00000382381, NM_001089, uc002cpy.1, uc010bsk.1, uc010bsl.1_5end |
EntrezGene: | ABCA3 |
HGNC: | 33 |
UniProt: | Q4LE27Q6P5P9Q99758 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 5.04e-13 | 58 |
barrier cell | 5.04e-13 | 58 |
meso-epithelial cell | 7.82e-13 | 45 |
endothelial cell | 2.20e-12 | 36 |
endothelial cell of vascular tree | 2.77e-12 | 24 |
blood vessel endothelial cell | 5.26e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.26e-10 | 18 |
kidney cell | 6.83e-08 | 17 |
kidney epithelial cell | 6.83e-08 | 17 |
epithelial cell of nephron | 3.46e-07 | 15 |