FFCP PHASE1:Hg19::chr6:138752021..138752035,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:138752021..138752035,- to FFCP PHASE1:Hg19::chr6:138752021..138752035,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57224 | |EntrezGene=57224 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21021 | |HGNC=21021 | ||
|TSSclassifier=strong | |||
|UniProt=B4DS58 | |UniProt=B4DS58 | ||
|association_with_transcript=0bp_to_AK299585_5end | |||
|cluster_id=chr6:138752021..138752035,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_28_at_NHSL1_5end | |||
|id=chr6:138752021..138752035,- | |||
|ontology_enrichment_celltype=CL:0000047!6.40e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;5.88e-30;6!CL:0000404;5.88e-30;6!CL:0002319;4.93e-12;25!CL:0000047;3.02e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.75e-39,8;CL:0000540,5.60e-30,6;CL:0000031,5.60e-30,6;CL:0000404,5.60e-30,6;CL:0002319,4.86e-12,25 | |||
|ontology_enrichment_development_v019=CL:0000031;5.88e-30;6 | |||
|ontology_enrichment_disease=DOID:114!1.87e-07!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.48e-55!57;UBERON:0005068!2.48e-55!57;UBERON:0006241!2.48e-55!57;UBERON:0007135!2.48e-55!57;UBERON:0001017!2.67e-54!82;UBERON:0005743!2.51e-51!86;UBERON:0002616!1.12e-46!59;UBERON:0000073!1.56e-45!94;UBERON:0001016!1.56e-45!94;UBERON:0002020!2.37e-44!34;UBERON:0003528!2.37e-44!34;UBERON:0001893!6.04e-44!34;UBERON:0000955!1.86e-43!69;UBERON:0006238!1.86e-43!69;UBERON:0002780!3.31e-42!41;UBERON:0001890!3.31e-42!41;UBERON:0006240!3.31e-42!41;UBERON:0002791!1.15e-41!33;UBERON:0003080!4.68e-41!42;UBERON:0001869!3.52e-39!32;UBERON:0002619!4.50e-39!22;UBERON:0003075!1.57e-38!86;UBERON:0007284!1.57e-38!86;UBERON:0002346!2.12e-36!90;UBERON:0000956!5.36e-34!25;UBERON:0000203!5.36e-34!25;UBERON:0001950!1.75e-33!20;UBERON:0007023!6.62e-32!115;UBERON:0003056!2.80e-26!61;UBERON:0004121!1.13e-23!169;UBERON:0000924!7.01e-23!173;UBERON:0006601!7.01e-23!173;UBERON:0000033!4.31e-22!123;UBERON:0000153!1.19e-20!129;UBERON:0007811!1.19e-20!129;UBERON:0000025!8.89e-16!194;UBERON:0001872!2.87e-15!5;UBERON:0003076!7.35e-15!15;UBERON:0003057!7.35e-15!15;UBERON:0001871!1.67e-13!7;UBERON:0002298!4.71e-13!8;UBERON:0004111!2.23e-12!241;UBERON:0000200!4.00e-12!6;UBERON:0002308!1.21e-11!9;UBERON:0000125!1.21e-11!9;UBERON:0004733!1.49e-11!12;UBERON:0002028!1.49e-11!12;UBERON:0007277!1.49e-11!12;UBERON:0004732!1.39e-10!13;UBERON:0000349!2.13e-10!5;UBERON:0000477!3.11e-10!286;UBERON:0000483!3.92e-10!309;UBERON:0000119!6.24e-10!312;UBERON:0006331!6.49e-10!3;UBERON:0002771!9.06e-10!3;UBERON:0000988!9.62e-10!3;UBERON:0002680!2.97e-08!9;UBERON:0001895!2.97e-08!9;UBERON:0010092!2.97e-08!9;UBERON:0002420!3.42e-08!9;UBERON:0007245!3.42e-08!9;UBERON:0010009!3.42e-08!9;UBERON:0010011!3.42e-08!9;UBERON:0000454!3.42e-08!9;UBERON:0001954!1.20e-07!2;UBERON:0003022!1.20e-07!2;UBERON:0002421!1.20e-07!2;UBERON:0002600!1.20e-07!2;UBERON:0002148!1.87e-07!2;UBERON:0009662!1.87e-07!2;UBERON:0000064!2.39e-07!219;UBERON:0000369!2.63e-07!4;UBERON:0002435!2.63e-07!4;UBERON:0000204!2.63e-07!4;UBERON:0010082!2.63e-07!4;UBERON:0009663!6.58e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.84e-14;22!UBERON:0000956;1.13e-12;25!UBERON:0000203;1.13e-12;25!UBERON:0001954;4.30e-11;2!UBERON:0003022;4.30e-11;2!UBERON:0002421;4.30e-11;2!UBERON:0002600;4.30e-11;2!UBERON:0000922;7.79e-10;49!UBERON:0002791;2.14e-09;32!UBERON:0001950;2.79e-09;20!UBERON:0001869;2.90e-09;32!UBERON:0003528;5.91e-09;34!UBERON:0002020;5.91e-09;34!UBERON:0002114;5.93e-08;2!UBERON:0002780;1.43e-07;41!UBERON:0001890;1.43e-07;41!UBERON:0001893;1.70e-07;34!UBERON:0001016;6.68e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.28e-19,81;UBERON:0001016,4.82e-17,89;UBERON:0002619,2.94e-14,22;UBERON:0000956,1.17e-12,25;UBERON:0000203,1.17e-12,25;UBERON:0001954,4.52e-11,2;UBERON:0003022,4.52e-11,2;UBERON:0002421,4.52e-11,2;UBERON:0002600,4.52e-11,2;UBERON:0002791,4.75e-10,32;UBERON:0001869,4.75e-10,32;UBERON:0003528,1.71e-09,34;UBERON:0002020,1.71e-09,34;UBERON:0001893,1.71e-09,34;UBERON:0001950,2.83e-09,20;UBERON:0004121,8.50e-09,171;UBERON:0000924,8.50e-09,171;UBERON:0006601,8.50e-09,171;UBERON:0011216,2.87e-08,223;UBERON:0002780,5.80e-08,41;UBERON:0001890,5.80e-08,41;UBERON:0003080,5.80e-08,41;UBERON:0006240,5.80e-08,41;UBERON:0002114,5.93e-08,2;UBERON:0000955,3.02e-07,68;UBERON:0006238,3.02e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50699269288109,2.31986643833309,2.01019518401218,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,9.98068990005971,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.331737779793674,0.295547618953547,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0,0,9.79432837217568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,0.399358000997982,0.858452096273142,0.446342914883745,0.201550417460179,0,0,0,0.0824158583811665,0,0,0,1.59045937961861,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.904980694530854,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,0.221858103073705,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.41023272848151,18.6533055204071,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0.413373593002368,0.0634158101939068,12.0334457984008,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0.111231401892069,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,8.29066311646717,0,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.50699269288109,2.31986643833309,2.01019518401218,1.91381625495949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,9.98068990005971,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.331737779793674,0.295547618953547,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0.234264445725339,0,0,0,0,0,9.79432837217568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0.195551382734803,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,0.399358000997982,0.858452096273142,0.446342914883745,0.201550417460179,0,0,0,0.0824158583811665,0,0,0,1.59045937961861,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0.904980694530854,0.39669780522807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.625954653532499,0,0.221858103073705,0.496771223531068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.41023272848151,18.6533055204071,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0.781078098613847,0.413373593002368,0.0634158101939068,12.0334457984008,0,0,0,0,0,0.336283722218824,0,0,0,0,0,0.0679697329768317,0.131545547125698,0,0.111231401892069,0,0.628462359664008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0.196308467114945,0.594092800654172,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0.135982980381829,8.29066311646717,0,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p28@NHSL1 | |||
}} | }} |
Latest revision as of 04:58, 25 September 2015
Short description: | p28@NHSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_NHSL1_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_AK299585_5end |
EntrezGene: | NHSL1 |
HGNC: | 21021 |
UniProt: | B4DS58 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.75e-39 | 8 |
neuron | 5.60e-30 | 6 |
neuroblast | 5.60e-30 | 6 |
electrically signaling cell | 5.60e-30 | 6 |
neural cell | 4.86e-12 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.28e-19 | 81 |
nervous system | 4.82e-17 | 89 |
regional part of cerebral cortex | 2.94e-14 | 22 |
cerebral cortex | 1.17e-12 | 25 |
pallium | 1.17e-12 | 25 |
Ammon's horn | 4.52e-11 | 2 |
lobe parts of cerebral cortex | 4.52e-11 | 2 |
hippocampal formation | 4.52e-11 | 2 |
limbic lobe | 4.52e-11 | 2 |
regional part of telencephalon | 4.75e-10 | 32 |
cerebral hemisphere | 4.75e-10 | 32 |
brain grey matter | 1.71e-09 | 34 |
gray matter | 1.71e-09 | 34 |
telencephalon | 1.71e-09 | 34 |
neocortex | 2.83e-09 | 20 |
ectoderm-derived structure | 8.50e-09 | 171 |
ectoderm | 8.50e-09 | 171 |
presumptive ectoderm | 8.50e-09 | 171 |
organ system subdivision | 2.87e-08 | 223 |
regional part of forebrain | 5.80e-08 | 41 |
forebrain | 5.80e-08 | 41 |
anterior neural tube | 5.80e-08 | 41 |
future forebrain | 5.80e-08 | 41 |
duodenum | 5.93e-08 | 2 |
brain | 3.02e-07 | 68 |
future brain | 3.02e-07 | 68 |