FFCP PHASE1:Hg19::chr5:138940893..138940983,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:138940893..138940983,+
|short_description=p1@UBE2D2
|description=CAGE_peak_1_at_UBE2D2_5end
|association_with_transcript=141bp_to_ENST00000505007_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7322 | |EntrezGene=7322 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12475 | |HGNC=12475 | ||
|TSSclassifier=strong | |||
|UniProt=D6RFM0 | |UniProt=D6RFM0 | ||
|association_with_transcript=141bp_to_ENST00000505007_5end | |||
|cluster_id=chr5:138940893..138940983,+ | |||
|description=CAGE_peak_1_at_UBE2D2_5end | |||
|id=chr5:138940893..138940983,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.33e-24!254;CL:0002321!2.37e-09!248;CL:1000497!2.79e-09!18;CL:0002518!2.79e-09!18;CL:0000220!9.43e-09!246;CL:1000449!3.05e-08!16;CL:0000076!1.21e-07!62;CL:0000945!1.95e-07!24;CL:0000826!1.95e-07!24;CL:0000542!3.29e-07!53;CL:0000051!3.29e-07!53;CL:0000838!5.79e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:1000497;4.90e-10;17!CL:0002518;4.90e-10;17!CL:1000449;5.42e-09;15!CL:0000945;1.77e-07;24!CL:0002681;2.21e-07;12!CL:0002584;2.21e-07;12!CL:1000507;6.48e-07;10!CL:1000494;6.48e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.40e-24,253;CL:1000497,4.70e-10,17;CL:0002518,4.70e-10,17;CL:0002321,1.65e-09,250;CL:1000449,5.23e-09,15;CL:0000945,1.95e-07,24;CL:0000826,1.95e-07,24;CL:0002681,2.12e-07,12;CL:0002584,2.12e-07,12;CL:0000076,2.40e-07,63;CL:0000542,3.29e-07,53;CL:0000051,3.29e-07,53;CL:0000838,5.79e-07,52;CL:1000507,6.35e-07,10;CL:1000494,6.35e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.72e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.72e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004211!3.05e-08!16;UBERON:0001285!3.05e-08!16;UBERON:0007684!3.05e-08!16;UBERON:0003220!3.05e-08!16;UBERON:0004208!3.05e-08!16;UBERON:0001008!7.24e-08!45;UBERON:0006554!1.06e-07!44;UBERON:0000353!1.58e-07!17;UBERON:0006555!3.02e-07!17;UBERON:0005103!3.02e-07!17;UBERON:0000083!3.02e-07!17;UBERON:0009201!3.02e-07!17;UBERON:0004819!3.02e-07!17;UBERON:0006553!3.02e-07!17;UBERON:0003074!3.02e-07!17;UBERON:0003060!3.02e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.43e-09;30!UBERON:0001008;2.43e-09;30!UBERON:0006555;5.42e-09;15!UBERON:0004819;5.42e-09;15!UBERON:0001285;5.42e-09;15!UBERON:0007684;5.42e-09;15!UBERON:0000353;2.03e-08;15!UBERON:0001225;2.21e-07;12!UBERON:0008987;2.21e-07;12!UBERON:0001851;4.86e-07;15!UBERON:0002113;6.25e-07;24!UBERON:0011143;6.25e-07;24!UBERON:0004211;6.48e-07;10!UBERON:0009773;6.48e-07;10!UBERON:0001231;6.48e-07;10!UBERON:0004810;6.48e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.23e-09,15;UBERON:0009773,5.23e-09,15;UBERON:0001231,5.23e-09,15;UBERON:0001285,5.23e-09,15;UBERON:0007684,5.23e-09,15;UBERON:0004208,5.23e-09,15;UBERON:0000353,1.88e-08,15;UBERON:0001008,6.27e-08,48;UBERON:0006555,6.84e-08,16;UBERON:0004819,6.84e-08,16;UBERON:0006554,9.22e-08,47;UBERON:0001225,2.12e-07,12;UBERON:0008987,2.12e-07,12;UBERON:0005177,2.45e-07,101;UBERON:0001851,4.82e-07,15;UBERON:0004810,6.35e-07,10 | |||
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| ||
|short_description=p1@UBE2D2 | |||
}} | }} |
Latest revision as of 00:39, 25 September 2015
Short description: | p1@UBE2D2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_UBE2D2_5end |
Coexpression cluster: | NA |
Association with transcript: | 141bp_to_ENST00000505007_5end |
EntrezGene: | UBE2D2 |
HGNC: | 12475 |
UniProt: | D6RFM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.40e-24 | 253 |
kidney cell | 4.70e-10 | 17 |
kidney epithelial cell | 4.70e-10 | 17 |
embryonic cell | 1.65e-09 | 250 |
epithelial cell of nephron | 5.23e-09 | 15 |
lymphocyte of B lineage | 1.95e-07 | 24 |
pro-B cell | 1.95e-07 | 24 |
kidney cortical cell | 2.12e-07 | 12 |
renal cortical epithelial cell | 2.12e-07 | 12 |
squamous epithelial cell | 2.40e-07 | 63 |
lymphocyte | 3.29e-07 | 53 |
common lymphoid progenitor | 3.29e-07 | 53 |
lymphoid lineage restricted progenitor cell | 5.79e-07 | 52 |
kidney tubule cell | 6.35e-07 | 10 |
nephron tubule epithelial cell | 6.35e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.23e-09 | 15 |
renal tubule | 5.23e-09 | 15 |
nephron tubule | 5.23e-09 | 15 |
nephron | 5.23e-09 | 15 |
uriniferous tubule | 5.23e-09 | 15 |
nephrogenic mesenchyme | 5.23e-09 | 15 |
parenchyma | 1.88e-08 | 15 |
renal system | 6.27e-08 | 48 |
excretory tube | 6.84e-08 | 16 |
kidney epithelium | 6.84e-08 | 16 |
urinary system structure | 9.22e-08 | 47 |
cortex of kidney | 2.12e-07 | 12 |
renal parenchyma | 2.12e-07 | 12 |
trunk region element | 2.45e-07 | 101 |
cortex | 4.82e-07 | 15 |
nephron tubule epithelium | 6.35e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.72e-07 | 106 |