FFCP PHASE1:Hg19::chr19:1026300..1026336,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1265 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2156 | |||
|TSSclassifier=strong | |||
|UniProt=Q99439,A6NFI4 | |||
|association_with_transcript=2bp_to_ENST00000263097,ENST00000348419,NM_004368,NM_201277,uc002lqt.1,uc002lqu.2,uc002lqv.2,uc010drz.1,uc010xgb.1,uc010xgc.1_5end | |||
|cluster_id=chr19:1026300..1026336,+ | |||
|description=CAGE_peak_5_at_CNN2_5end | |||
|id=chr19:1026300..1026336,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.66e-17!180;CL:0000548!6.45e-16!679;CL:0000004!6.45e-16!679;CL:0000255!6.45e-16!679;CL:0000144!1.32e-15!625;CL:0000012!2.18e-15!682;CL:0000003!8.30e-14!722;CL:0000057!6.22e-13!75;CL:0002371!1.04e-12!591;CL:0000183!9.50e-10!59;CL:0000680!4.04e-09!57;CL:0000056!4.04e-09!57;CL:0000355!4.04e-09!57;CL:0000187!2.04e-08!54;CL:0000222!9.60e-08!119;CL:0000048!5.46e-07!430;CL:0000723!5.67e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002615;2.44e-09;3!CL:0002580;3.02e-09;3!CL:0002579;8.00e-09;3!CL:0002620;1.35e-08;23!CL:0000057;1.51e-08;73!CL:0000632;3.49e-08;3!CL:0002334;9.71e-08;12!CL:0000136;2.71e-07;13!CL:0002548;6.38e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.56e-20,76;CL:0002615,2.49e-09,3;CL:0002580,2.85e-09,3;CL:0002579,7.36e-09,3;CL:0000048,1.46e-08,427;CL:0002620,2.26e-08,23;CL:0000723,3.07e-08,433;CL:0000136,3.86e-08,15;CL:0000632,4.23e-08,3;CL:0000034,7.98e-08,441;CL:0002334,9.08e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000486!4.45e-10!82;UBERON:0000914!1.06e-09!83;UBERON:0002329!1.06e-09!83;UBERON:0003077!1.06e-09!83;UBERON:0003059!1.06e-09!83;UBERON:0007282!1.06e-09!83;UBERON:0009618!1.06e-09!83;UBERON:0007285!1.06e-09!83;UBERON:0004290!2.63e-08!70;UBERON:0001134!1.23e-07!61;UBERON:0002036!1.23e-07!61;UBERON:0003082!1.23e-07!61;UBERON:0005256!2.29e-07!143;UBERON:0002385!5.47e-07!63;UBERON:0001015!5.47e-07!63;UBERON:0000383!5.47e-07!63;UBERON:0002100!6.40e-07!216;UBERON:0002199!8.90e-07!45;UBERON:0002416!8.90e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.84e-16;6!UBERON:0002358;1.84e-16;6!UBERON:0003684;1.84e-16;6!UBERON:0001178;1.84e-16;6!UBERON:0004457;4.25e-14;9!UBERON:0000042;4.25e-14;9!UBERON:0002097;5.23e-07;41!UBERON:0000310;7.46e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.73e-16,6;UBERON:0002358,1.73e-16,6;UBERON:0003684,1.73e-16,6;UBERON:0001178,1.73e-16,6;UBERON:0004457,3.11e-10,12;UBERON:0000042,3.11e-10,12;UBERON:0002097,2.35e-08,41;UBERON:0002199,4.12e-07,46;UBERON:0002416,4.12e-07,46;UBERON:0002100,4.71e-07,199;UBERON:0000310,7.38e-07,10 | |||
|phase1_expression=3.08853244759946,3.63970890614671,3.24195129420734,5.00366491765652,4.91657203870017,4.36169262050184,0,0.631719873426831,0.783556884599516,0.245733936501509,2.79120467188971,0.218441372130172,0,0.495065411840187,0,0,0.602694528023977,1.46062018077475,0.975865597581014,0.738726348460727,0.612002073732759,1.88072832886853,0,0,0.251085279189606,0,0.328402357799783,0,0,0,0,0,0.30120591877825,0.739508020333575,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0.217188844705117,0.605399502633369,0,0,0.422510572623884,0,0,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0.546138611262131,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.334231370655521,0,0.221533894583621,0,0.25618263945135,0.390178042679635,0.328875809207352,0,0.579606171470105,0.14828656316206,0,1.04535523804977,0.339928028092699,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,1.34140171940727,0.255725123687061,0,0.50133791063589,0.724232594804119,0,0,0.567208902984407,0.221729397462564,0.527008714158756,0.0654895377488563,0,0,1.29818957461873,0.348259474598534,0.664789802594326,0,0,0,0.198762407366705,0,0.694281003215189,0,0,0,0.208994966536811,0.258416759169329,0.35576626268671,0,0.805658634218294,0,0,0.367663080345869,0.81014194788176,0,0,0,0,0,0,0,0,0.436094052142534,0.496971951695318,0.759783069987479,0.529636723252875,0.573673241497627,0.354668382198357,1.12135520028461,5.33744978648525,1.2333377420858,1.24484414159907,0,0,0.605429710579726,0.576175924479999,0,0.312160076830321,0.570471821544449,0.298897361103602,0,0,0.140450806702248,0.204154171254893,0,0.103325781175765,0,0.494533858557114,1.82032272387605,1.43723628363248,0,0,0,0.877955241761676,1.83892677479412,1.20190447125277,0.113432183160021,0.179389635688862,0.213557388818567,1.27159140695737,1.20036438433761,1.54578793857658,1.03056216018252,2.41951913231067,1.0126579934476,1.94874010322397,1.00973509697646,1.56484827691909,0.323292113637624,0.355009592516614,0.201504196455281,1.18692414617341,0.773043412653187,0.545492241181669,0.860413786167011,0,0,0,0.10366105501537,0,0,1.56449532329816,3.85944562915731,0,1.85747171212792,0.721879481669586,0.118306800039844,0.168584690078102,0,0.330881918197182,0.217879444092406,0.237270619111097,0,0.392442930250692,0,0,0,2.4694440679884,1.47008711385542,0,0,0,0,0,0.343135620597051,0.98775256867763,0,0.100528972411631,0.0925884451585296,0,0,0,0,1.29149563659404,0.144366447761074,0,0,0,0,0.246217006087397,1.17002132569619,0,0.93733833986777,1.34385702559088,0.425325291727159,0.268675568108545,0.581267877027924,0.383382679165211,0,0.176096868026452,0,0,0,0,0,0,0,0.102827492703324,0,0,0.448524337381443,0.43596006883328,0.2933531432838,0.517086863031111,7.15312891703765,0,1.59562869950922,0,0.257207374262142,1.41849132023278,0.532844358032199,0.285955987316295,1.08524321078289,0.823240336780769,0.325736184293735,0,0,1.50719688529793,0.871533458600294,0.499864955910285,0,0,0,0.239624855491583,0,1.42636905040718,0.434343920002738,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.49076596687656,0,0.271265023699736,1.03985430765404,1.78428988797162,0.788512075169673,0.468565659970853,2.70851489754947,0,0,0,0.553107505625109,0.434418072340414,0.783204629850962,0.343143423810856,0,0,0.106727557803444,0,0,0,4.96215615637554,3.22270143904931,3.64858122762996,1.40953064181271,6.65219423786715,3.05622450172854,0,0.462629081407967,0.710246901252508,0.410635780069046,0.519254429183621,0.232420756919918,0.241718899183244,1.20303882181971,0,1.37777337797528,0.546273504020151,0.917870904715969,0,0,0.784349769176855,0,0.211103257785751,0,0.170093705276516,0.215915916102139,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0,0,0.183138929636687,0.247528499761764,0.574265537996172,1.30012049207304,1.6068392984416,0.096670718292122,0.308097234229289,0.15350367472613,0,0.322260734604821,0.435050081742686,0.340906509664404,1.15741646340759,0.330569830721956,0.960950336825531,0,0.10115778085555,1.39453664789186,0,0.6970372701606,0.308033580176089,1.06461206063404,0,0.37064843820784,0.429374660225974,0,0.316379424718726,0.762520775695299,1.27948895655667,0,0.318203247925937,0,0,0.54907405947211,0.471249609382746,1.01091240786658,0,0,1.95053495635836,0.731140468893853,3.16950440270266,0.545999645631943,0.707027159768564,1.13008116620243,0,0,1.31535265576129,1.15755106853338,0,0.811641507850816,0.6196469961995,0,0.143411352204052,0.491245205065606,1.426684205925,0,1.26664581178598,0.987884678879706,0,0,0.0962221127255121,1.34060455107157,0,0.0941438007767792,0.86101074534246,0,0.443430153536676,0,0,0,0,0.238231775457789,0,0,0,0,0.320472213382419,0,0.980160863924127,0.371606350251437,0,0,0.159426272728822,0,0.191505370132367,0,0,0,0,0,0,0,0.321176150207399,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0.333926115068718,0.16480387422676,0.211125408127993,0.398495976502139,0,0,0.102268682502155,0.123084805461069,0.311039587661807,0.0898683511473268,0.179021174675609,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0.153900517007594,0,0,0.359030577639089,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.158936578980379,0,9.46750287323057,0,0,0,0.0884575645033392,0,0.889563386041866,1.72989514525104,2.71497068714184,0,0,0,0,0,0,0,0,0,0.63186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0.293977192243133,0.174118413160805,0,0,0,0,0.164230914106418,0,0.0882561266915003,0,0,0,0,0.195551382734803,0.160317640503067,0,0,0,0,0,0,0.248505071130865,0,0.543616824294456,0.732219924186332,0.203996435272644,0.577901179803038,0,0,0,0.429765441419957,0.525774708558629,0,0,0,0,0,0,0.0671834724867263,1.08089965062721,0,0,0,0,0.0984274815147488,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0.864221491201268,0,0,0,0.340776043570843,0.113312091520126,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,1.04478362020812,0,0,0.947015026375446,0.251567901752575,0.889811221596536,0.228840068396924,0.151230923763239,0.15543720058278,0.147855149989634,0.159296767163702,0,0.621051827505038,0,0,0.521745061811734,0.601030435988874,0,1.62748293281865,0.181848659202559,0.322231671127465,0,0.398095888698616,0.400027764663154,0.343395705182793,1.34699795506368,0,0,1.07220795687463,0,2.26705925512272,0.926089897295336,0.734210113519403,0.358177682162975,0.926404341482917,0.657852148736121,0,0.771656153083659,0,0,0.345430341731199,1.21543982470953,0,0,0.398594520940089,0.490696182767533,0,0.245772908753719,0.211312123358627,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0.318004350653419,0,0,1.41070377476274,0.3062454773532,0,0,0,0,0,0,0,0,0.392590874004102,0,0.183428598521679,0,0,0,0.596748666348824,0.225630985047772,0,0,0,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0,0,0.354581522651905,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0.62164849248911,0,0,0,0,0,0,0.4582137370881,0,0,0,0.294450700845729,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0.193373663920732,0,0,0,0.0802413666891683,0.730336388246517,0,0,0.157771562193185,0,0,0,2.97596014533401,1.38652688589425,0.865253124247578,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0.25458863311266,0,0,0,0,0.143444410785353,0,0.325613074443898,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p5@CNN2 | |||
}} |
Latest revision as of 23:42, 24 September 2015
Short description: | p5@CNN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CNN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 2bp_to_ENST00000263097, ENST00000348419, NM_004368, NM_201277, uc002lqt.1, uc002lqu.2, uc002lqv.2, uc010drz.1, uc010xgb.1, uc010xgc.1_5end |
EntrezGene: | CNN2 |
HGNC: | 2156 |
UniProt: | Q99439A6NFI4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.56e-20 | 76 |
adipocyte of omentum tissue | 2.49e-09 | 3 |
preadipocyte of the breast | 2.85e-09 | 3 |
omentum preadipocyte | 7.36e-09 | 3 |
multi fate stem cell | 1.46e-08 | 427 |
skin fibroblast | 2.26e-08 | 23 |
somatic stem cell | 3.07e-08 | 433 |
fat cell | 3.86e-08 | 15 |
hepatic stellate cell | 4.23e-08 | 3 |
stem cell | 7.98e-08 | 441 |
preadipocyte | 9.08e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.73e-16 | 6 |
peritoneum | 1.73e-16 | 6 |
abdominal cavity | 1.73e-16 | 6 |
visceral peritoneum | 1.73e-16 | 6 |
cavity lining | 3.11e-10 | 12 |
serous membrane | 3.11e-10 | 12 |
skin of body | 2.35e-08 | 41 |
integument | 4.12e-07 | 46 |
integumental system | 4.12e-07 | 46 |
trunk | 4.71e-07 | 199 |
breast | 7.38e-07 | 10 |