FFCP PHASE1:Hg19::chr17:42988700..42988738,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:42988700..42988738,-
|short_description=p3@GFAP
|description=CAGE_peak_3_at_GFAP_5end
|association_with_transcript=-22bp_to_M26638_5end
|EntrezGene=2670
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2670 | |EntrezGene=2670 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4235 | |HGNC=4235 | ||
|TSSclassifier=strong | |||
|UniProt=P14136 | |UniProt=P14136 | ||
|association_with_transcript=-22bp_to_M26638_5end | |||
|cluster_id=chr17:42988700..42988738,- | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_3_at_GFAP_5end | |||
|id=chr17:42988700..42988738,- | |||
|ontology_enrichment_celltype=CL:0000128!6.83e-08!7;CL:0000126!6.83e-08!7;CL:0000127!6.83e-08!7;CL:0002453!6.83e-08!7;CL:0002605!8.61e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.78e-11;3!CL:0002319;3.26e-08;25!CL:0000128;5.10e-08;7!CL:0000126;5.10e-08;7!CL:0000127;5.10e-08;7!CL:0000047;3.04e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,3.65e-11,3;CL:0000047,9.88e-10,8;CL:0002319,3.13e-08,25;CL:0000128,4.96e-08,7;CL:0000126,4.96e-08,7;CL:0000127,4.96e-08,7;CL:0002453,4.96e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.30e-20;82!UBERON:0006241;4.80e-12;3!UBERON:0003057;4.80e-12;3!UBERON:0010122;4.95e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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| ||
|short_description=p3@GFAP | |||
}} | }} |
Latest revision as of 23:38, 24 September 2015
Short description: | p3@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GFAP_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | -22bp_to_M26638_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | P14136 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 3.65e-11 | 3 |
neuronal stem cell | 9.88e-10 | 8 |
neural cell | 3.13e-08 | 25 |
oligodendrocyte | 4.96e-08 | 7 |
macroglial cell | 4.96e-08 | 7 |
astrocyte | 4.96e-08 | 7 |
oligodendrocyte precursor cell | 4.96e-08 | 7 |