FFCP PHASE1:Hg19::chr19:821931..821981,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79948 | |EntrezGene=79948 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=38319 | |HGNC=38319 | ||
|TSSclassifier=strong | |||
|UniProt=Q6T4P5 | |UniProt=Q6T4P5 | ||
|association_with_transcript=0bp_to_ENST00000300947,ENST00000359894,ENST00000519502,ENST00000520876,NM_024888,uc002lpw.1,uc002lpx.1,uc002lpy.1_5end | |association_with_transcript=0bp_to_ENST00000300947,ENST00000359894,ENST00000519502,ENST00000520876,NM_024888,uc002lpw.1,uc002lpx.1,uc002lpy.1_5end | ||
|cluster_id=chr19:821931..821981,- | |||
|description=CAGE_peak_1_at_MIR3187_5end | |description=CAGE_peak_1_at_MIR3187_5end | ||
|id=chr19:821931..821981,- | |id=chr19:821931..821981,- | ||
|ontology_enrichment_celltype=CL:0002319!7.31e-11!25;CL:0000133!7.71e-08!59;CL:0000047!2.48e-07!8 | |ontology_enrichment_celltype=CL:0002319!7.31e-11!25;CL:0000133!7.71e-08!59;CL:0000047!2.48e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002319;2.40e-09;25!CL:0000540;1.59e-08;6!CL:0000404;1.59e-08;6!CL:0002322;3.14e-07;5!CL:0002321;5.95e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.88e-10,8;CL:0002319,1.65e-09,25;CL:0000540,1.60e-08,6;CL:0000031,1.60e-08,6;CL:0000404,1.60e-08,6;CL:0000133,3.01e-08,59;CL:0002322,3.19e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000031;1.59e-08;6 | |||
|ontology_enrichment_disease=DOID:3095!4.59e-12!22;DOID:2994!4.59e-12!22;DOID:8692!2.72e-08!31;DOID:162!7.36e-08!235;DOID:14566!8.93e-08!239;DOID:171!5.89e-07!10 | |ontology_enrichment_disease=DOID:3095!4.59e-12!22;DOID:2994!4.59e-12!22;DOID:8692!2.72e-08!31;DOID:162!7.36e-08!235;DOID:14566!8.93e-08!239;DOID:171!5.89e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.88e-14;22!DOID:2994;1.88e-14;22!DOID:8692;4.74e-11;31!DOID:171;1.48e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.78e-14,22;DOID:2994,1.78e-14,22;DOID:8692,3.69e-11,31;DOID:162,1.19e-08,235;DOID:171,1.52e-08,10;DOID:14566,4.65e-08,239;DOID:1240,1.50e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.93e-24!94;UBERON:0001016!1.93e-24!94;UBERON:0005743!1.14e-22!86;UBERON:0001017!2.02e-22!82;UBERON:0000955!5.81e-17!69;UBERON:0006238!5.81e-17!69;UBERON:0002346!5.84e-16!90;UBERON:0002020!8.24e-16!34;UBERON:0003528!8.24e-16!34;UBERON:0001869!1.23e-15!32;UBERON:0001893!2.10e-15!34;UBERON:0000924!5.35e-15!173;UBERON:0006601!5.35e-15!173;UBERON:0002791!6.75e-15!33;UBERON:0003075!4.68e-14!86;UBERON:0007284!4.68e-14!86;UBERON:0001049!9.10e-14!57;UBERON:0005068!9.10e-14!57;UBERON:0006241!9.10e-14!57;UBERON:0007135!9.10e-14!57;UBERON:0004121!1.98e-13!169;UBERON:0002616!4.64e-13!59;UBERON:0002780!6.53e-13!41;UBERON:0001890!6.53e-13!41;UBERON:0006240!6.53e-13!41;UBERON:0000956!6.88e-13!25;UBERON:0000203!6.88e-13!25;UBERON:0003056!7.57e-13!61;UBERON:0002619!1.41e-12!22;UBERON:0003080!2.84e-12!42;UBERON:0001950!5.33e-12!20;UBERON:0000033!1.50e-10!123;UBERON:0000153!5.15e-10!129;UBERON:0007811!5.15e-10!129;UBERON:0000475!2.44e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.33e-14;20!UBERON:0002619;5.21e-14;22!UBERON:0001869;1.73e-12;32!UBERON:0003528;4.03e-12;34!UBERON:0002020;4.03e-12;34!UBERON:0000956;1.18e-11;25!UBERON:0000203;1.18e-11;25!UBERON:0002791;1.66e-11;32!UBERON:0001893;3.34e-11;34!UBERON:0000922;2.05e-08;49!UBERON:0002780;1.06e-07;41!UBERON:0001890;1.06e-07;41!UBERON:0000955;3.31e-07;68!UBERON:0001871;3.80e-07;6!UBERON:0001016;6.01e-07;83!UBERON:0001017;6.39e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.80e-22,89;UBERON:0001017,4.35e-20,81;UBERON:0001950,3.31e-14,20;UBERON:0000955,3.72e-14,68;UBERON:0006238,3.72e-14,68;UBERON:0002619,6.67e-14,22;UBERON:0001869,1.03e-13,32;UBERON:0003528,1.58e-13,34;UBERON:0002020,1.58e-13,34;UBERON:0001893,1.78e-12,34;UBERON:0002791,2.09e-12,32;UBERON:0001049,2.72e-12,56;UBERON:0005068,2.72e-12,56;UBERON:0006241,2.72e-12,56;UBERON:0007135,2.72e-12,56;UBERON:0000073,1.20e-11,53;UBERON:0002616,1.20e-11,53;UBERON:0000956,1.46e-11,25;UBERON:0000203,1.46e-11,25;UBERON:0002346,2.90e-11,86;UBERON:0004121,4.38e-11,171;UBERON:0000924,4.38e-11,171;UBERON:0006601,4.38e-11,171;UBERON:0002780,4.47e-10,41;UBERON:0001890,4.47e-10,41;UBERON:0003080,4.47e-10,41;UBERON:0006240,4.47e-10,41;UBERON:0011216,1.35e-09,223;UBERON:0003075,3.43e-09,82;UBERON:0007284,3.43e-09,82;UBERON:0003056,1.68e-08,61;UBERON:0001871,4.64e-07,6;UBERON:0010371,4.75e-07,104 | |||
|phase1_expression=0,0,0,3.00219895059391,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,0,0,0,0,0,4.30923703268758,1.42800483870977,8.77673220138646,0.85870796139317,0.410623275218653,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,6.75281010470149,0,0,0,0.447830948479849,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,10.0085952214529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724232594804119,0,0,1.60709189178915,0.886917589850256,1.40535657109002,1.44076983047484,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0,0,0,0,0.402829317109147,1.52054421143703,0.976248230192678,0,7.29127753093584,0,0,0,0,0,0.366403487860815,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0,0,1.51357427644931,0,0,0.312160076830321,0,0.298897361103602,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0,1.4351170855109,0.640672166455702,0.211931901159562,0.300091096084402,0.103052529238439,0.772921620136887,0.558350568994769,0,0,0.252433774244115,0.184099797284599,0,4.26011511019937,0.403008392910561,0.67824236924195,0,0.272746120590835,0,38.6656648430817,32.3372634704424,33.3476616035518,32.7568933848571,33.5586731664586,51.461807629692,0,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,1.47008711385542,0,0,0.590789906681404,0,1.35287282397425,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,0,9.15850199303107,0.939269553886573,0,0,0,0.790204397959275,0.858486162094873,0.246217006087397,0,0,0,0,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,1.71072446022705,0,0.300343057843917,0,0,0.87192013766656,0,0.129271715757778,3.57656445851882,0,0,1.04007436911366,0.257207374262142,0,0,1.28680194292333,2.71310802695722,0.823240336780769,0,2.13235169245527,0.791951872933429,5.72734816413214,7.84380112740265,3.99891964728228,0,1.00451418286425,0,0,0,0,0,0,0,0,0,0,0,1.77866236955724,33.8363620029816,91.248079907768,88.1135555658675,77.8285277016859,0,0,0,0.36807447515742,0,0.271265023699736,0,0,0.157702415033935,0,0.902838299183157,2.27407504055985,0,0,0,0.0868836144680828,3.52442083432933,2.74514739048685,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0.116210378459959,6.64726972753922,4.0101294060657,0,0.574072240823034,0,1.31124414959424,0,0.462092022626489,3.13739907670742,1.46139224653261,0.527758144464379,1.13733384070897,0.340187410553031,0.215915916102139,0,2.70946437543853,2.00675909541941,0,0,0,0,0,0.512900250232778,6.56029291399411,0,0,4.30376484646214,2.14524699793529,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0.0890320356467374,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0.18532421910392,0,0.372158369359667,0,0.762520775695299,2.04718233049067,0.855877976067841,0,0,0,0.54907405947211,0.353437207037059,0,0,0,0.48763373908959,0,0,0.136499911407986,0.565621727814851,0,0,0,0.438450885253763,0,1.9676842561399,0,0.30982349809975,0,0,0.392996164052485,0,0,0.211107635297664,0,0.379473173765715,0.699869440489966,0.0962221127255121,0,1.08890984861323,0.0941438007767792,0.86101074534246,1.68471475667626,0,0.459446800413919,0,0,0,0,0,0,0,0,12.3915922507869,2.88743956579008,0.735120647943095,0,0,0,0,0,0,0,125.628690886253,37.9076190453169,22.595233224286,84.6071437174325,55.1395849598148,0,42.0740756771693,28.2519590067467,28.9575441629422,0,72.8160611411045,50.550800383686,62.9021264253895,0,0.835218521685727,1.23087398947712,0.270455678475983,14.9882385599019,0,0,0,9.22339965296302,0,0,0,0,0,12.9239194209619,3.51673541026282,0,0,15.4121547933435,0,0,0,0.20453736500431,0,0,0,0,37.8563553967885,0,0,0,7.75466196876175,3.52518773015035,161.687176380967,1.04171104434093,0,0,0,0,0.945550727071745,2.06846023944879,2.62444152044929,6.07687482266523,3.54296554325536,3.37670028151142,0,0,0,0.87754158861589,0,0,0,0,8.76142836674629,10.0528561738945,3.04212641381623,0,0,0,0,4.39544717906069,2.49317522850235,8.57263510345287,9.99918925020472,5.20246919625112,2.27704479269022,0,0.632994193584081,0,1.69623685720729,0,0,0,1.83309043480088,0,0,0,0.202203398942031,0,3.27970224015475,0,0,6.7978506269546,0,1.20990716048664,112.022630756759,0.063186579628488,0.60129367765797,0.622129148383483,1.99396161812156,3.30991955875499,1.2557316736289,1.19472429772959,3.41531455235751,4.02156551738102,2.95051555169723,0,0,0,0,0,0,0,0,4.32455020788351,2.03382666702479,0.274083849293502,0,4.11520173713212,0.195551382734803,2.24444696704294,0,5.79447867788178,3.89044126316086,14.889757501569,0,0.576219191952599,2.11229310461235,0,3.94122197613481,3.765702467244,0.203996435272644,1.44475294950759,0.600420288709789,0.410716136675979,7.66479528401834,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0.0674035438541849,0.984274815147488,0,0.795229689809303,2.72406812223151,32.7936422868639,32.3217676003499,30.7425850141597,0,0,5.28521142924815,0,0,3.566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| 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| ||
|short_description=p1@MIR3187 | |short_description=p1@MIR3187 | ||
}} | }} |
Latest revision as of 23:25, 24 September 2015
Short description: | p1@MIR3187 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MIR3187_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000300947, ENST00000359894, ENST00000519502, ENST00000520876, NM_024888, uc002lpw.1, uc002lpx.1, uc002lpy.1_5end |
EntrezGene: | LPPR3 |
HGNC: | 38319 |
UniProt: | Q6T4P5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.88e-10 | 8 |
neural cell | 1.65e-09 | 25 |
neuron | 1.60e-08 | 6 |
neuroblast | 1.60e-08 | 6 |
electrically signaling cell | 1.60e-08 | 6 |
neurectodermal cell | 3.01e-08 | 59 |
embryonic stem cell | 3.19e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.80e-22 | 89 |
central nervous system | 4.35e-20 | 81 |
neocortex | 3.31e-14 | 20 |
brain | 3.72e-14 | 68 |
future brain | 3.72e-14 | 68 |
regional part of cerebral cortex | 6.67e-14 | 22 |
cerebral hemisphere | 1.03e-13 | 32 |
brain grey matter | 1.58e-13 | 34 |
gray matter | 1.58e-13 | 34 |
telencephalon | 1.78e-12 | 34 |
regional part of telencephalon | 2.09e-12 | 32 |
neural tube | 2.72e-12 | 56 |
neural rod | 2.72e-12 | 56 |
future spinal cord | 2.72e-12 | 56 |
neural keel | 2.72e-12 | 56 |
regional part of nervous system | 1.20e-11 | 53 |
regional part of brain | 1.20e-11 | 53 |
cerebral cortex | 1.46e-11 | 25 |
pallium | 1.46e-11 | 25 |
neurectoderm | 2.90e-11 | 86 |
ectoderm-derived structure | 4.38e-11 | 171 |
ectoderm | 4.38e-11 | 171 |
presumptive ectoderm | 4.38e-11 | 171 |
regional part of forebrain | 4.47e-10 | 41 |
forebrain | 4.47e-10 | 41 |
anterior neural tube | 4.47e-10 | 41 |
future forebrain | 4.47e-10 | 41 |
organ system subdivision | 1.35e-09 | 223 |
neural plate | 3.43e-09 | 82 |
presumptive neural plate | 3.43e-09 | 82 |
pre-chordal neural plate | 1.68e-08 | 61 |
temporal lobe | 4.64e-07 | 6 |
ecto-epithelium | 4.75e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.78e-14 | 22 |
germ cell cancer | 1.78e-14 | 22 |
myeloid leukemia | 3.69e-11 | 31 |
cancer | 1.19e-08 | 235 |
neuroectodermal tumor | 1.52e-08 | 10 |
disease of cellular proliferation | 4.65e-08 | 239 |
leukemia | 1.50e-07 | 39 |