FFCP PHASE1:Hg19::chr2:219925704..219925721,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3549 | |EntrezGene=3549 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5956 | |HGNC=5956 | ||
|TSSclassifier=strong | |||
|UniProt=Q14623 | |UniProt=Q14623 | ||
|association_with_transcript=-466bp_to_NM_002181_5end | |association_with_transcript=-466bp_to_NM_002181_5end | ||
|cluster_id=chr2:219925704..219925721,- | |||
|coexpression_cluster_id=C4187 | |coexpression_cluster_id=C4187 | ||
|description=CAGE_peak_3_at_IHH_5end | |description=CAGE_peak_3_at_IHH_5end | ||
|id=chr2:219925704..219925721,- | |id=chr2:219925704..219925721,- | ||
|ontology_enrichment_celltype=CL:0002322!9.34e-08!5 | |ontology_enrichment_celltype=CL:0002322!9.34e-08!5 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3493!4.51e-09!2;DOID:3119!3.53e-07!14 | |ontology_enrichment_disease=DOID:3493!4.51e-09!2;DOID:3119!3.53e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!6.90e-20!35;UBERON:0000059!2.35e-18!11;UBERON:0000160!2.58e-16!27;UBERON:0004907!8.62e-14!5;UBERON:0001155!7.24e-12!9;UBERON:0004921!3.67e-11!129;UBERON:0004185!3.67e-11!129;UBERON:0001052!3.00e-10!4;UBERON:0001007!2.26e-09!155;UBERON:0001555!2.26e-09!155;UBERON:0007026!2.26e-09!155;UBERON:0004119!3.71e-08!169;UBERON:0000925!3.71e-08!169;UBERON:0006595!3.71e-08!169;UBERON:0001046!3.22e-07!19 | |ontology_enrichment_uberon=UBERON:0005409!6.90e-20!35;UBERON:0000059!2.35e-18!11;UBERON:0000160!2.58e-16!27;UBERON:0004907!8.62e-14!5;UBERON:0001155!7.24e-12!9;UBERON:0004921!3.67e-11!129;UBERON:0004185!3.67e-11!129;UBERON:0001052!3.00e-10!4;UBERON:0001007!2.26e-09!155;UBERON:0001555!2.26e-09!155;UBERON:0007026!2.26e-09!155;UBERON:0004119!3.71e-08!169;UBERON:0000925!3.71e-08!169;UBERON:0006595!3.71e-08!169;UBERON:0001046!3.22e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.78e-36;17!UBERON:0005409;8.66e-36;22!UBERON:0000059;5.63e-24;11!UBERON:0004921;9.67e-23;33!UBERON:0002108;1.69e-19;4!UBERON:0001155;5.19e-19;9!UBERON:0006834;1.07e-11;1!UBERON:0001301;1.07e-11;1!UBERON:0001052;1.59e-11;4!UBERON:0004907;2.13e-09;5!UBERON:0001555;2.16e-09;54!UBERON:0000922;4.28e-07;49!UBERON:0001007;6.85e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.48e-36,17;UBERON:0005409,1.23e-31,25;UBERON:0000059,4.23e-24,11;UBERON:0002108,1.92e-19,4;UBERON:0001155,4.02e-19,9;UBERON:0006834,6.97e-12,1;UBERON:0001301,1.19e-11,1;UBERON:0001052,1.47e-11,4;UBERON:0004907,2.00e-09,5;UBERON:0004921,4.06e-09,118;UBERON:0001007,3.94e-07,145;UBERON:0001555,3.94e-07,145;UBERON:0007026,3.94e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69716365721711,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,1.4098700508785,3.36852972734796,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,1.99052386215701,2.12298154808014,12.8316330436061,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0.288180834308212,0,12.1832448481995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0.0787831823072236,0.164831716762333,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0.560544326627578,3.65263488203798,0,0,2.64463213453628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,1.09726132484042,0,0,0,0,0,0,0.118920090777569,0,0,0,1.54348316215889,4.80831033108706,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.833621662743,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69716365721711,0.10366105501537,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0.811367035427949,0,1.4098700508785,3.36852972734796,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0.503865495708552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,1.99052386215701,2.12298154808014,12.8316330436061,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0.288180834308212,0,12.1832448481995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,0.0787831823072236,0.164831716762333,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0.560544326627578,3.65263488203798,0,0,2.64463213453628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,1.09726132484042,0,0,0,0,0,0,0.118920090777569,0,0,0,1.54348316215889,4.80831033108706,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,1.46067277649303,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.833621662743,0,0,0,0 | ||
|short_description=p3@IHH | |short_description=p3@IHH | ||
}} | }} |
Latest revision as of 19:20, 24 September 2015
Short description: | p3@IHH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IHH_5end |
Coexpression cluster: | C4187_colon_gastrointestinal_small_hepatoblastoma_rectum_stomach_duodenum |
Association with transcript: | -466bp_to_NM_002181_5end |
EntrezGene: | IHH |
HGNC: | 5956 |
UniProt: | Q14623 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 1.48e-36 | 17 |
gastrointestinal system | 1.23e-31 | 25 |
large intestine | 4.23e-24 | 11 |
small intestine | 1.92e-19 | 4 |
colon | 4.02e-19 | 9 |
uterus or analog | 6.97e-12 | 1 |
epididymis | 1.19e-11 | 1 |
rectum | 1.47e-11 | 4 |
lower digestive tract | 2.00e-09 | 5 |
subdivision of digestive tract | 4.06e-09 | 118 |
digestive system | 3.94e-07 | 145 |
digestive tract | 3.94e-07 | 145 |
primitive gut | 3.94e-07 | 145 |