FFCP PHASE1:Hg19::chr22:40296982..40296993,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9402 | |EntrezGene=9402 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |HGNC=4563 | ||
|TSSclassifier=strong | |||
|UniProt=O75791,F5H1V3,Q6FI14 | |UniProt=O75791,F5H1V3,Q6FI14 | ||
|association_with_transcript=-92bp_to_ENST00000344138,ENST00000543252,NM_004810,uc003ayh.1,uc003ayi.2,uc011aom.1,uc011aon.1_5end | |association_with_transcript=-92bp_to_ENST00000344138,ENST00000543252,NM_004810,uc003ayh.1,uc003ayi.2,uc011aom.1,uc011aon.1_5end | ||
|cluster_id=chr22:40296982..40296993,+ | |||
|description=CAGE_peak_10_at_GRAP2_5end | |description=CAGE_peak_10_at_GRAP2_5end | ||
|id=chr22:40296982..40296993,+ | |id=chr22:40296982..40296993,+ | ||
|ontology_enrichment_celltype=CL:0000838!5.59e-40!52;CL:0000542!4.55e-39!53;CL:0000051!4.55e-39!53;CL:0000791!3.92e-28!18;CL:0000789!3.92e-28!18;CL:0002420!3.92e-28!18;CL:0002419!3.92e-28!18;CL:0000790!3.92e-28!18;CL:0000084!3.47e-25!25;CL:0000827!3.47e-25!25;CL:0000738!1.75e-22!140;CL:0002031!3.93e-22!124;CL:0002087!8.35e-22!119;CL:0000037!1.39e-18!172;CL:0000566!1.39e-18!172;CL:0000988!5.54e-17!182;CL:0000624!9.96e-17!6;CL:0002032!2.41e-16!165;CL:0000837!2.41e-16!165;CL:0000945!5.71e-16!24;CL:0000826!5.71e-16!24;CL:0000625!1.09e-15!11;CL:0000236!9.79e-13!14;CL:0000898!3.12e-09!3;CL:0000815!9.23e-07!2;CL:0000792!9.23e-07!2;CL:0002677!9.23e-07!2 | |ontology_enrichment_celltype=CL:0000838!5.59e-40!52;CL:0000542!4.55e-39!53;CL:0000051!4.55e-39!53;CL:0000791!3.92e-28!18;CL:0000789!3.92e-28!18;CL:0002420!3.92e-28!18;CL:0002419!3.92e-28!18;CL:0000790!3.92e-28!18;CL:0000084!3.47e-25!25;CL:0000827!3.47e-25!25;CL:0000738!1.75e-22!140;CL:0002031!3.93e-22!124;CL:0002087!8.35e-22!119;CL:0000037!1.39e-18!172;CL:0000566!1.39e-18!172;CL:0000988!5.54e-17!182;CL:0000624!9.96e-17!6;CL:0002032!2.41e-16!165;CL:0000837!2.41e-16!165;CL:0000945!5.71e-16!24;CL:0000826!5.71e-16!24;CL:0000625!1.09e-15!11;CL:0000236!9.79e-13!14;CL:0000898!3.12e-09!3;CL:0000815!9.23e-07!2;CL:0000792!9.23e-07!2;CL:0002677!9.23e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.97e-11;24 | |ontology_enrichment_celltype_v019=CL:0000945;1.97e-11;24 | ||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.86e-11,24;CL:0000826,1.86e-11,24 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2355;3.74e-18;1!DOID:74;9.46e-10;2!DOID:0060058;1.05e-07;10 | |ontology_enrichment_disease_v019=DOID:2355;3.74e-18;1!DOID:74;9.46e-10;2!DOID:0060058;1.05e-07;10 | ||
|ontology_enrichment_disease_v019_2=DOID:2355,3.75e-18,1;DOID:74,9.46e-10,2;DOID:0060058,1.05e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!9.94e-15!7;UBERON:0002106!5.04e-09!3;UBERON:0004854!5.04e-09!3;UBERON:0009034!5.04e-09!3;UBERON:0002095!5.04e-09!3;UBERON:0004782!5.04e-09!3;UBERON:0003281!5.04e-09!3;UBERON:0009664!5.04e-09!3;UBERON:0002296!5.04e-09!3;UBERON:0005602!5.04e-09!3;UBERON:0001179!5.04e-09!3;UBERON:0006293!5.04e-09!3;UBERON:0002370!1.39e-07!4;UBERON:0005058!1.39e-07!4;UBERON:0009113!1.39e-07!4;UBERON:0003295!1.39e-07!4;UBERON:0005562!1.39e-07!4 | |ontology_enrichment_uberon=UBERON:0004177!9.94e-15!7;UBERON:0002106!5.04e-09!3;UBERON:0004854!5.04e-09!3;UBERON:0009034!5.04e-09!3;UBERON:0002095!5.04e-09!3;UBERON:0004782!5.04e-09!3;UBERON:0003281!5.04e-09!3;UBERON:0009664!5.04e-09!3;UBERON:0002296!5.04e-09!3;UBERON:0005602!5.04e-09!3;UBERON:0001179!5.04e-09!3;UBERON:0006293!5.04e-09!3;UBERON:0002370!1.39e-07!4;UBERON:0005058!1.39e-07!4;UBERON:0009113!1.39e-07!4;UBERON:0003295!1.39e-07!4;UBERON:0005562!1.39e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.90e-34;2!UBERON:0005058;9.90e-34;2!UBERON:0009113;9.90e-34;2!UBERON:0004177;1.91e-30;5!UBERON:0005057;1.91e-30;5!UBERON:0002106;5.80e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0002370;9.90e-34;2!UBERON:0005058;9.90e-34;2!UBERON:0009113;9.90e-34;2!UBERON:0004177;1.91e-30;5!UBERON:0005057;1.91e-30;5!UBERON:0002106;5.80e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,3.70e-22,7;UBERON:0005057,3.70e-22,7;UBERON:0002370,1.22e-17,4;UBERON:0005058,1.22e-17,4;UBERON:0009113,1.22e-17,4;UBERON:0003295,1.22e-17,4;UBERON:0005562,1.22e-17,4;UBERON:0003351,4.30e-12,6;UBERON:0000974,1.29e-07,10;UBERON:0003408,1.29e-07,10;UBERON:0001042,1.29e-07,10;UBERON:0009145,1.29e-07,10;UBERON:0006562,5.31e-07,11;UBERON:0009722,5.31e-07,11;UBERON:0007690,5.31e-07,11;UBERON:0002106,5.80e-07,3;UBERON:0004854,5.80e-07,3;UBERON:0009034,5.80e-07,3;UBERON:0002095,5.80e-07,3;UBERON:0004782,5.80e-07,3;UBERON:0003281,5.80e-07,3;UBERON:0009664,5.80e-07,3;UBERON:0002296,5.80e-07,3;UBERON:0005602,5.80e-07,3;UBERON:0001179,5.80e-07,3;UBERON:0006293,5.80e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75750833220288,1.06730766284929,0.787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,3.51992488922645,0.546138611262131,0.889509253863555,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0.764546456250458,0,0,0,0.393419540227666,0.786021525498329,0.205601498999509,0.167186495390678,0.32592226663359,0.473447805734733,0,0.111410456885174,0.589211814949674,0,0,0.512365278902701,1.04047478047903,0.328875809207352,0,0.289803085735052,1.03800594213442,1.07016331235885,1.04535523804977,0.453237370790265,0.383220493601921,0.68725489096526,0.506039384039006,0.318565414324097,0,0.950452044448374,0.150575119077773,0.639933055772092,0,0,0.821127996921047,0.201606743224732,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.792435906119034,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.318852545457645,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,5.09699895217138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,1.35636710655613,1.98639085746745,0,0,0,0,0,0.471464371102113,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75750833220288,1.06730766284929,0.787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,3.51992488922645,0.546138611262131,0.889509253863555,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0.764546456250458,0,0,0,0.393419540227666,0.786021525498329,0.205601498999509,0.167186495390678,0.32592226663359,0.473447805734733,0,0.111410456885174,0.589211814949674,0,0,0.512365278902701,1.04047478047903,0.328875809207352,0,0.289803085735052,1.03800594213442,1.07016331235885,1.04535523804977,0.453237370790265,0.383220493601921,0.68725489096526,0.506039384039006,0.318565414324097,0,0.950452044448374,0.150575119077773,0.639933055772092,0,0,0.821127996921047,0.201606743224732,0.534880391567015,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0.792435906119034,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.318852545457645,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,5.09699895217138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,1.35636710655613,1.98639085746745,0,0,0,0,0,0.471464371102113,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@GRAP2 | |short_description=p10@GRAP2 | ||
}} | }} |
Latest revision as of 19:16, 24 September 2015
Short description: | p10@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_GRAP2_5end |
Coexpression cluster: | NA |
Association with transcript: | -92bp_to_ENST00000344138, ENST00000543252, NM_004810, uc003ayh.1, uc003ayi.2, uc011aom.1, uc011aon.1_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | O75791F5H1V3Q6FI14 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.86e-11 | 24 |
pro-B cell | 1.86e-11 | 24 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 3.70e-22 | 7 |
immune organ | 3.70e-22 | 7 |
thymus | 1.22e-17 | 4 |
hemolymphoid system gland | 1.22e-17 | 4 |
thymic region | 1.22e-17 | 4 |
pharyngeal gland | 1.22e-17 | 4 |
thymus primordium | 1.22e-17 | 4 |
pharyngeal epithelium | 4.30e-12 | 6 |
neck | 1.29e-07 | 10 |
gland of gut | 1.29e-07 | 10 |
chordate pharynx | 1.29e-07 | 10 |
pharyngeal region of foregut | 1.29e-07 | 10 |
pharynx | 5.31e-07 | 11 |
entire pharyngeal arch endoderm | 5.31e-07 | 11 |
early pharyngeal endoderm | 5.31e-07 | 11 |
spleen | 5.80e-07 | 3 |
gastrointestinal system mesentery | 5.80e-07 | 3 |
stomach region | 5.80e-07 | 3 |
mesentery | 5.80e-07 | 3 |
gastrointestinal system serosa | 5.80e-07 | 3 |
mesentery of stomach | 5.80e-07 | 3 |
gut mesentery | 5.80e-07 | 3 |
dorsal mesentery | 5.80e-07 | 3 |
dorsal mesogastrium | 5.80e-07 | 3 |
peritoneal cavity | 5.80e-07 | 3 |
spleen primordium | 5.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
anemia | 3.75e-18 | 1 |
hematopoietic system disease | 9.46e-10 | 2 |
lymphoma | 1.05e-07 | 10 |