FFCP PHASE1:Hg19::chr20:19955902..19955946,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WYP3 | |UniProt=Q8WYP3 | ||
|association_with_transcript=0bp_to_M37190_5end | |association_with_transcript=0bp_to_M37190_5end | ||
|cluster_id=chr20:19955902..19955946,+ | |||
|description=CAGE_peak_4_at_RIN2_5end | |description=CAGE_peak_4_at_RIN2_5end | ||
|id=chr20:19955902..19955946,+ | |id=chr20:19955902..19955946,+ | ||
|ontology_enrichment_celltype=CL:0000066!5.30e-15!254;CL:0002076!3.52e-13!43;CL:0000057!5.08e-11!75;CL:0000055!1.79e-10!180;CL:0000220!6.48e-10!246;CL:0002321!2.32e-09!248;CL:0002251!3.11e-08!21;CL:0000223!5.46e-08!59;CL:0000077!3.12e-07!19 | |ontology_enrichment_celltype=CL:0000066!5.30e-15!254;CL:0002076!3.52e-13!43;CL:0000057!5.08e-11!75;CL:0000055!1.79e-10!180;CL:0000220!6.48e-10!246;CL:0002321!2.32e-09!248;CL:0002251!3.11e-08!21;CL:0000223!5.46e-08!59;CL:0000077!3.12e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.06e-10;42!CL:0002251;1.94e-08;20!CL:0000077;1.97e-07;19 | |ontology_enrichment_celltype_v019=CL:0002076;2.06e-10;42!CL:0002251;1.94e-08;20!CL:0000077;1.97e-07;19 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-15,253;CL:0002076,1.62e-13,42;CL:0000057,2.58e-11,76;CL:0002321,5.95e-09,250;CL:0002251,2.47e-08,20;CL:0000223,3.08e-08,58;CL:0000077,2.02e-07,19 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!4.55e-08!14;DOID:305!6.25e-08!106 | |ontology_enrichment_disease=DOID:1749!4.55e-08!14;DOID:305!6.25e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.24e-08;14 | |ontology_enrichment_disease_v019=DOID:1749;2.24e-08;14 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.47e-08,106;DOID:1749,2.77e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!6.74e-18!95;UBERON:0000475!1.39e-17!365;UBERON:0000481!8.05e-17!347;UBERON:0000467!8.83e-16!625;UBERON:0000062!1.05e-15!511;UBERON:0000480!1.18e-15!626;UBERON:0000468!2.22e-15!659;UBERON:0003104!5.93e-15!238;UBERON:0009142!5.93e-15!238;UBERON:0000923!5.17e-13!604;UBERON:0005291!5.17e-13!604;UBERON:0006598!5.17e-13!604;UBERON:0002532!5.17e-13!604;UBERON:0002050!6.03e-13!605;UBERON:0005423!6.03e-13!605;UBERON:0004119!6.26e-12!169;UBERON:0000925!6.26e-12!169;UBERON:0006595!6.26e-12!169;UBERON:0000922!1.24e-11!612;UBERON:0001004!1.10e-10!72;UBERON:0002100!1.15e-10!216;UBERON:0005256!3.76e-10!143;UBERON:0001007!8.97e-10!155;UBERON:0001555!8.97e-10!155;UBERON:0007026!8.97e-10!155;UBERON:0000165!2.32e-09!28;UBERON:0000930!2.32e-09!28;UBERON:0000161!2.82e-09!35;UBERON:0000914!2.93e-09!83;UBERON:0002329!2.93e-09!83;UBERON:0003077!2.93e-09!83;UBERON:0003059!2.93e-09!83;UBERON:0007282!2.93e-09!83;UBERON:0009618!2.93e-09!83;UBERON:0007285!2.93e-09!83;UBERON:0002097!1.07e-08!40;UBERON:0000486!1.29e-08!82;UBERON:0000926!2.81e-08!448;UBERON:0004120!2.81e-08!448;UBERON:0006603!2.81e-08!448;UBERON:0001444!3.32e-08!48;UBERON:0002199!4.20e-08!45;UBERON:0002416!4.20e-08!45;UBERON:0000166!6.30e-08!21;UBERON:0000119!3.11e-07!312;UBERON:0000483!6.96e-07!309 | |ontology_enrichment_uberon=UBERON:0003102!6.74e-18!95;UBERON:0000475!1.39e-17!365;UBERON:0000481!8.05e-17!347;UBERON:0000467!8.83e-16!625;UBERON:0000062!1.05e-15!511;UBERON:0000480!1.18e-15!626;UBERON:0000468!2.22e-15!659;UBERON:0003104!5.93e-15!238;UBERON:0009142!5.93e-15!238;UBERON:0000923!5.17e-13!604;UBERON:0005291!5.17e-13!604;UBERON:0006598!5.17e-13!604;UBERON:0002532!5.17e-13!604;UBERON:0002050!6.03e-13!605;UBERON:0005423!6.03e-13!605;UBERON:0004119!6.26e-12!169;UBERON:0000925!6.26e-12!169;UBERON:0006595!6.26e-12!169;UBERON:0000922!1.24e-11!612;UBERON:0001004!1.10e-10!72;UBERON:0002100!1.15e-10!216;UBERON:0005256!3.76e-10!143;UBERON:0001007!8.97e-10!155;UBERON:0001555!8.97e-10!155;UBERON:0007026!8.97e-10!155;UBERON:0000165!2.32e-09!28;UBERON:0000930!2.32e-09!28;UBERON:0000161!2.82e-09!35;UBERON:0000914!2.93e-09!83;UBERON:0002329!2.93e-09!83;UBERON:0003077!2.93e-09!83;UBERON:0003059!2.93e-09!83;UBERON:0007282!2.93e-09!83;UBERON:0009618!2.93e-09!83;UBERON:0007285!2.93e-09!83;UBERON:0002097!1.07e-08!40;UBERON:0000486!1.29e-08!82;UBERON:0000926!2.81e-08!448;UBERON:0004120!2.81e-08!448;UBERON:0006603!2.81e-08!448;UBERON:0001444!3.32e-08!48;UBERON:0002199!4.20e-08!45;UBERON:0002416!4.20e-08!45;UBERON:0000166!6.30e-08!21;UBERON:0000119!3.11e-07!312;UBERON:0000483!6.96e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0000165;7.35e-10;28!UBERON:0000161;1.70e-08;19!UBERON:0000166;1.70e-08;19!UBERON:0003729;9.60e-08;13!UBERON:0002097;4.17e-07;41!UBERON:0001004;8.45e-07;65 | |ontology_enrichment_uberon_v019=UBERON:0000165;7.35e-10;28!UBERON:0000161;1.70e-08;19!UBERON:0000166;1.70e-08;19!UBERON:0003729;9.60e-08;13!UBERON:0002097;4.17e-07;41!UBERON:0001004;8.45e-07;65 | ||
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|phase1_expression=4.36028110249336,7.27941781229343,5.63817616383885,2.00146596706261,3.12872766099101,2.61701557230111,0,6.94891860769514,1.04474251279935,4.42321085702716,6.28021051175185,8.30077214094655,7.91300934685361,18.0698875321668,16.9012661621237,13.4465029290355,12.6565850885035,14.6062018077475,7.80692478064811,2.21617904538218,4.69201589861782,3.13454721478088,0.572471974262113,0.547497700291537,0.627713197974014,0,0,0,0.393364276848904,0.383829398097213,0.928896739896456,20.2272669385364,8.433765725791,6.28581817283539,0,0,0,0.553995408531877,0.802177789880567,0.434021741431704,14.1066748771152,11.9840656427022,12.363627246441,1.16318591023652,1.51150377475524,0.970336244751265,0.697287110717054,0.411167888021826,0.929119112685311,0.575384784644301,0,0.47296445977717,0.689491361473237,0,0,1.12945403725563,0,0.224723484445085,0.918251677112708,0,0.639337125799041,0.659702600373432,0.199463657621632,1.27867425159808,2.32167390902867,0.56738522469114,1.86846674698672,0,1.0429658368404,0,5.44859552370032,0.736555271975129,0.316462387440884,0.211255286311942,0.212604299965044,0.419317291016752,1.90958672949042,1.20141514273205,2.73233497385036,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,4.87613732627923,0.670700859703636,2.55725123687061,4.69870898099936,4.51204119572301,7.38717246700201,4.7717156823066,13.6257763684738,2.74150969775797,1.99556457716308,2.45937399940753,2.29213382120997,8.37879163072847,11.4943177263173,1.9472843619281,2.61194605948901,4.38761269712255,0,0,0,0.198762407366705,0.860234595106124,1.04142150482278,0,0.838998872419812,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,12.6467275121335,4.96971951695318,6.71141711822273,4.63432132846266,6.59724227722272,2.83734705758686,5.60677600142307,0,2.4666754841716,4.35695449559673,5.52313755485721,4.41347138406339,3.17850598054356,2.30470369792,1.87457145467037,13.1107232268735,5.13424639390004,11.6569970830405,4.93224894303812,4.20869655357142,5.75848307479219,10.8201710765093,6.26455018290017,8.369388275237,8.31602000097437,6.92347401979959,4.55080680969013,2.87447256726495,5.72342787443825,4.00379263590285,11.6366928503357,5.26773145057006,5.51678032438235,7.51190294532984,1.92834711372036,5.91985797773244,6.40672166455702,8.05341224406335,7.80236849819446,9.17167510222106,8.24449728146013,8.56137539125313,7.76371128309825,7.3077753870899,7.06814567883521,7.91629128323774,5.33431987502079,3.90510551768276,3.82857973265033,5.93462073086707,17.58673763786,17.4557517178134,12.3325976017272,0,0,0,0,0,0,20.3384392028761,18.6539872075937,9.66944449467364,11.6091982007995,7.21879481669586,9.93777120334689,8.59781919398319,11.8095404642906,7.94116603673236,8.27941887551143,8.54174228799948,8.62920372225052,7.06397274451246,10.7729203944989,0,1.40241773803446,4.5273141246454,5.88034845542168,1.26755034821831,0,0.590789906681404,0,7.50229475112993,3.77449182656756,14.7065382447558,11.240175325762,10.1534262135747,26.2951184250224,1.3032332212413,7.27954349695705,4.3299402607582,1.73895607462615,2.81780866165972,0.144366447761074,0,0.190254152234598,0,0,7.38651018262192,4.44608103764552,8.47197625045751,15.9347517777521,8.23112428174412,14.4610599187234,13.7024539735358,16.8567684338098,16.1020725249389,0,0,0,0.288239906833923,0,0.126995788584338,0,0,0,0.514137463516618,0.300343057843917,0,9.30688000066494,2.1798003441664,9.16728572761875,6.33431407213111,3.57656445851882,7.607724773004,2.39344304926383,2.08014873822732,5.65856223376713,5.67396528093113,3.19706614819319,4.28933980974443,4.88359444852299,10.70212437815,6.84045987016844,3.19852753868291,3.95975936466715,15.6748476070985,7.84380112740265,12.9964888536674,10.9461402577071,10.5473989200747,8.43335757932127,3.83399768786532,1.14861935834114,8.5582143024431,4.05387658669222,7.80810025691457,8.77398719875488,0,0,0.215627574859517,0,0.76228387266739,0,0.773288812777695,0.167516265334349,1.27587750330633,0,0,0,17.2995003323987,6.5022167737758,9.22301080579101,5.40724239980099,4.99601168632053,7.09660867652706,9.13703036943163,3.91229929646035,4.5481500811197,4.1389228517002,5.31380478828349,4.60922921354258,2.95404289191482,2.15381273209015,0.343143423810856,0,0.647142602455851,0.213455115606889,6.36567900037145,0,6.35019615992329,6.94701861892575,10.4354141835882,3.92924132206303,5.12556597022804,5.62877973973374,3.53878626515936,7.42090332224955,4.47208112027701,5.85953693533319,11.0871660618642,9.34657972530518,4.64841513839837,10.7564910136544,6.41620704970512,6.53775021444864,5.28146461557191,6.3731908802351,4.72047893853927,6.76799419361118,2.15642943892361,5.49044838423799,2.92278449306521,4.22206515571503,1.13733384070897,0,3.45465465763423,1.54227252690289,3.52230368807009,3.51182841698397,8.41091701048626,6.64860807142979,5.59686886805446,0,0,3.59030175162945,6.56029291399411,6.18218949862176,3.29731237272711,2.6555144797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| ||
|short_description=p4@RIN2 | |short_description=p4@RIN2 | ||
}} | }} |
Latest revision as of 16:41, 24 September 2015
Short description: | p4@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_M37190_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | Q8WYP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.20e-15 | 253 |
endo-epithelial cell | 1.62e-13 | 42 |
fibroblast | 2.58e-11 | 76 |
embryonic cell | 5.95e-09 | 250 |
epithelial cell of alimentary canal | 2.47e-08 | 20 |
endodermal cell | 3.08e-08 | 58 |
mesothelial cell | 2.02e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
surface structure | 1.26e-19 | 99 |
endoderm-derived structure | 4.39e-12 | 160 |
endoderm | 4.39e-12 | 160 |
presumptive endoderm | 4.39e-12 | 160 |
respiratory system | 3.23e-11 | 74 |
mouth | 5.27e-10 | 29 |
stomodeum | 5.27e-10 | 29 |
orifice | 6.60e-10 | 36 |
digestive system | 8.24e-10 | 145 |
digestive tract | 8.24e-10 | 145 |
primitive gut | 8.24e-10 | 145 |
skin of body | 6.99e-09 | 41 |
head | 8.55e-09 | 56 |
multilaminar epithelium | 1.25e-08 | 83 |
trunk | 1.30e-08 | 199 |
oral opening | 1.59e-08 | 22 |
integument | 2.32e-08 | 46 |
integumental system | 2.32e-08 | 46 |
mesenchyme | 3.84e-08 | 160 |
entire embryonic mesenchyme | 3.84e-08 | 160 |
subdivision of head | 5.76e-08 | 49 |
developing anatomical structure | 1.01e-07 | 581 |
mouth mucosa | 1.03e-07 | 13 |
organ component layer | 2.81e-07 | 66 |
embryonic structure | 3.04e-07 | 564 |
embryo | 4.19e-07 | 592 |
trunk mesenchyme | 4.64e-07 | 122 |
anterior region of body | 7.74e-07 | 62 |
craniocervical region | 7.74e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.47e-08 | 106 |
squamous cell carcinoma | 2.77e-08 | 14 |