FFCP PHASE1:Hg19::chr12:71551618..71551630,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:71551618..71551630,-
|short_description=p3@TSPAN8
|description=CAGE_peak_3_at_TSPAN8_5end
|association_with_transcript=0bp_to_uc009zrt.1_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7103 | |EntrezGene=7103 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11855 | |HGNC=11855 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc009zrt.1_5end | |||
|cluster_id=chr12:71551618..71551630,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_3_at_TSPAN8_5end | |||
|id=chr12:71551618..71551630,- | |||
|ontology_enrichment_celltype=CL:1000306!1.12e-09!4;CL:0002547!1.12e-09!4;CL:0002595!2.61e-08!5;CL:0002150!1.14e-07!3;CL:0000861!1.14e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000306;2.75e-16;4!CL:0002547;2.75e-16;4!CL:0002595;4.76e-14;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000306,3.51e-16,4;CL:0002547,3.51e-16,4;CL:0002595,4.84e-14,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.83e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,1.95e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!5.86e-15!129;UBERON:0004185!5.86e-15!129;UBERON:0005409!7.00e-14!35;UBERON:0001007!1.94e-13!155;UBERON:0001555!1.94e-13!155;UBERON:0007026!1.94e-13!155;UBERON:0000160!3.10e-12!27;UBERON:0004119!1.83e-11!169;UBERON:0000925!1.83e-11!169;UBERON:0006595!1.83e-11!169;UBERON:0000059!1.65e-10!11;UBERON:0001637!3.63e-10!42;UBERON:0003509!3.63e-10!42;UBERON:0004572!3.63e-10!42;UBERON:0003104!7.78e-10!238;UBERON:0009142!7.78e-10!238;UBERON:0000415!1.12e-09!4;UBERON:0007240!1.12e-09!4;UBERON:0005742!1.12e-09!4;UBERON:0005734!1.12e-09!4;UBERON:0004664!1.12e-09!4;UBERON:0004663!1.12e-09!4;UBERON:0000481!1.96e-09!347;UBERON:0004573!3.54e-09!33;UBERON:0004571!3.54e-09!33;UBERON:0000077!5.72e-09!130;UBERON:0003834!2.61e-08!5;UBERON:0001533!2.61e-08!5;UBERON:0004907!4.07e-08!5;UBERON:0001155!5.83e-07!9;UBERON:0001046!9.64e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.18e-30;22!UBERON:0000160;3.67e-23;17!UBERON:0004921;6.80e-17;33!UBERON:0004797;2.75e-16;4!UBERON:0000415;2.75e-16;4!UBERON:0007240;2.75e-16;4!UBERON:0005742;2.75e-16;4!UBERON:0005734;2.75e-16;4!UBERON:0004664;2.75e-16;4!UBERON:0004663;2.75e-16;4!UBERON:0000059;3.84e-14;11!UBERON:0003834;4.76e-14;5!UBERON:0001533;4.76e-14;5!UBERON:0004573;2.33e-11;33!UBERON:0004571;2.33e-11;33!UBERON:0003513;4.67e-10;7!UBERON:0001637;5.37e-09;42!UBERON:0003509;5.37e-09;42!UBERON:0004572;5.37e-09;42!UBERON:0002108;8.33e-09;4!UBERON:0001155;2.40e-08;9!UBERON:0000945;2.40e-08;5!UBERON:0010039;2.40e-08;5!UBERON:0004907;2.40e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.85e-26,25;UBERON:0000160,3.46e-23,17;UBERON:0000415,3.51e-16,4;UBERON:0007240,3.51e-16,4;UBERON:0005742,3.51e-16,4;UBERON:0005734,3.51e-16,4;UBERON:0004664,3.51e-16,4;UBERON:0004663,3.51e-16,4;UBERON:0000059,3.63e-14,11;UBERON:0003834,4.84e-14,5;UBERON:0001533,4.84e-14,5;UBERON:0004573,5.24e-13,33;UBERON:0004571,5.24e-13,33;UBERON:0003513,4.73e-10,7;UBERON:0001637,9.35e-10,42;UBERON:0003509,9.35e-10,42;UBERON:0004572,9.35e-10,42;UBERON:0004797,2.62e-09,7;UBERON:0002108,8.33e-09,4;UBERON:0004907,2.26e-08,5;UBERON:0001155,2.40e-08,9;UBERON:0004921,1.02e-07,118;UBERON:0001046,1.66e-07,19;UBERON:0001007,2.98e-07,145;UBERON:0001555,2.98e-07,145;UBERON:0007026,2.98e-07,145 | |||
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| ||
|short_description=p3@TSPAN8 | |||
}} | }} |
Latest revision as of 16:36, 24 September 2015
Short description: | p3@TSPAN8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TSPAN8_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_uc009zrt.1_5end |
EntrezGene: | TSPAN8 |
HGNC: | 11855 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of tunica adventitia of artery | 3.51e-16 | 4 |
fibroblast of the aortic adventitia | 3.51e-16 | 4 |
smooth muscle cell of the subclavian artery | 4.84e-14 | 5 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.85e-26 | 25 |
intestine | 3.46e-23 | 17 |
artery wall | 3.51e-16 | 4 |
tunica adventitia of artery | 3.51e-16 | 4 |
adventitia | 3.51e-16 | 4 |
tunica adventitia of blood vessel | 3.51e-16 | 4 |
aorta tunica adventitia | 3.51e-16 | 4 |
aorta wall | 3.51e-16 | 4 |
large intestine | 3.63e-14 | 11 |
thoracic segment blood vessel | 4.84e-14 | 5 |
subclavian artery | 4.84e-14 | 5 |
systemic artery | 5.24e-13 | 33 |
systemic arterial system | 5.24e-13 | 33 |
trunk blood vessel | 4.73e-10 | 7 |
artery | 9.35e-10 | 42 |
arterial blood vessel | 9.35e-10 | 42 |
arterial system | 9.35e-10 | 42 |
blood vessel layer | 2.62e-09 | 7 |
small intestine | 8.33e-09 | 4 |
lower digestive tract | 2.26e-08 | 5 |
colon | 2.40e-08 | 9 |
subdivision of digestive tract | 1.02e-07 | 118 |
hindgut | 1.66e-07 | 19 |
digestive system | 2.98e-07 | 145 |
digestive tract | 2.98e-07 | 145 |
primitive gut | 2.98e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 1.95e-09 | 2 |