FFCP PHASE1:Hg19::chr19:59055814..59055835,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10155 | |EntrezGene=10155 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16384 | |HGNC=16384 | ||
|TSSclassifier=strong | |||
|UniProt=Q13263 | |UniProt=Q13263 | ||
|association_with_transcript=0bp_to_ENST00000253024,ENST00000341753,NM_005762,uc002qtg.1,uc010eut.1_5end | |association_with_transcript=0bp_to_ENST00000253024,ENST00000341753,NM_005762,uc002qtg.1,uc010eut.1_5end | ||
|cluster_id=chr19:59055814..59055835,+ | |||
|coexpression_cluster_id=C1357 | |||
|description=CAGE_peak_1_at_TRIM28_5end | |description=CAGE_peak_1_at_TRIM28_5end | ||
|id=chr19:59055814..59055835,+ | |id=chr19:59055814..59055835,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.71e-35!682;CL:0000548!2.52e-34!679;CL:0000004!2.52e-34!679;CL:0000255!2.52e-34!679;CL:0000003!2.66e-23!722;CL:0000144!8.12e-23!625;CL:0000066!2.50e-16!254;CL:0002371!2.68e-16!591;CL:0002321!1.07e-14!248;CL:0000220!6.29e-14!246;CL:0000063!2.35e-13!578;CL:0000055!2.36e-09!180;CL:0000222!2.63e-09!119;CL:1000449!5.79e-07!16 | |ontology_enrichment_celltype=CL:0000012!1.71e-35!682;CL:0000548!2.52e-34!679;CL:0000004!2.52e-34!679;CL:0000255!2.52e-34!679;CL:0000003!2.66e-23!722;CL:0000144!8.12e-23!625;CL:0000066!2.50e-16!254;CL:0002371!2.68e-16!591;CL:0002321!1.07e-14!248;CL:0000220!6.29e-14!246;CL:0000063!2.35e-13!578;CL:0000055!2.36e-09!180;CL:0000222!2.63e-09!119;CL:1000449!5.79e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000449;2.36e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.16e-16,253;CL:0002321,6.82e-15,250;CL:0000222,1.85e-09,121;CL:1000449,2.23e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!2.65e-09!39;DOID:8692!1.27e-08!31;DOID:2531!7.19e-08!51;DOID:0060083!7.19e-08!51;DOID:162!2.34e-07!235 | |ontology_enrichment_disease=DOID:1240!2.65e-09!39;DOID:8692!1.27e-08!31;DOID:2531!7.19e-08!51;DOID:0060083!7.19e-08!51;DOID:162!2.34e-07!235 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.16e-08;31!DOID:1240;2.25e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.65e-09,39;DOID:8692,1.27e-08,31;DOID:2531,7.19e-08,51;DOID:0060083,7.19e-08,51;DOID:162,2.34e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0000490!3.37e-08!138;UBERON:0003914!4.59e-08!118;UBERON:0004211!5.79e-07!16;UBERON:0001285!5.79e-07!16;UBERON:0007684!5.79e-07!16;UBERON:0003220!5.79e-07!16;UBERON:0004208!5.79e-07!16 | |ontology_enrichment_uberon=UBERON:0000490!3.37e-08!138;UBERON:0003914!4.59e-08!118;UBERON:0004211!5.79e-07!16;UBERON:0001285!5.79e-07!16;UBERON:0007684!5.79e-07!16;UBERON:0003220!5.79e-07!16;UBERON:0004208!5.79e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.36e-07;15!UBERON:0004819;2.36e-07;15!UBERON:0001285;2.36e-07;15!UBERON:0007684;2.36e-07;15!UBERON:0000490;4.89e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,8.25e-10,148;UBERON:0003914,3.88e-08,117;UBERON:0007503,1.54e-07,78;UBERON:0004211,2.23e-07,15;UBERON:0009773,2.23e-07,15;UBERON:0001231,2.23e-07,15;UBERON:0001285,2.23e-07,15;UBERON:0007684,2.23e-07,15;UBERON:0004208,2.23e-07,15 | |||
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| ||
|short_description=p1@TRIM28 | |short_description=p1@TRIM28 | ||
}} | }} |
Latest revision as of 08:16, 20 September 2015
Short description: | p1@TRIM28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRIM28_5end |
Coexpression cluster: | C1357_Mesenchymal_Alveolar_Renal_Placental_acantholytic_Tracheal_Bronchial |
Association with transcript: | 0bp_to_ENST00000253024, ENST00000341753, NM_005762, uc002qtg.1, uc010eut.1_5end |
EntrezGene: | TRIM28 |
HGNC: | 16384 |
UniProt: | Q13263 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.16e-16 | 253 |
embryonic cell | 6.82e-15 | 250 |
mesodermal cell | 1.85e-09 | 121 |
epithelial cell of nephron | 2.23e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 8.25e-10 | 148 |
epithelial tube | 3.88e-08 | 117 |
epithelial vesicle | 1.54e-07 | 78 |
nephron epithelium | 2.23e-07 | 15 |
renal tubule | 2.23e-07 | 15 |
nephron tubule | 2.23e-07 | 15 |
nephron | 2.23e-07 | 15 |
uriniferous tubule | 2.23e-07 | 15 |
nephrogenic mesenchyme | 2.23e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.65e-09 | 39 |
myeloid leukemia | 1.27e-08 | 31 |
hematologic cancer | 7.19e-08 | 51 |
immune system cancer | 7.19e-08 | 51 |
cancer | 2.34e-07 | 235 |