EntrezGene:10155
From FANTOM5_SSTAR
Symbol: | TRIM28 | ||
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Description: | tripartite motif containing 28 | ||
Synonyms: | KAP1, RNF96, TF1B, TIF1B | ||
Species: | Human (Homo sapiens) | ||
Xrefs: |
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Associated motifs: | NA | ||
Transcripton Factor?: | No |
TSS regions
Hg19::chr19:59055412..59055468,+ | p2@TRIM28 |
Hg19::chr19:59055602..59055605,+ | p17@TRIM28 |
Hg19::chr19:59055814..59055835,+ | p1@TRIM28 |
TSS peak ID | Short_description |
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View on UCSC genome browser
TSS expression
Sample | p1@TRIM28 | p2@TRIM28 |
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- Click each plot point to find sample in table
ENCODE TF ChIP-seq peak enrichment analysis Analyst: Erik Arner <br>Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><br><br>link to source dataset.<br>data
(#promoters = Number of promoters in the coexpression cluster that have ChIP signal of the TF)
Coexpression cluster | #promoters | Enrichment | p-value | q-value |
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Coexpression cluster | #promoters | Enrichment | p-value | q-value |
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C333-Fibroblast-Smooth-Preadipocyte-Adipocyte-Ewing-Placental-sacrococcigeal | 15 | 7.97e+0 | 1.05e-10 | 1.13e-8 |
C1192-extraskeletal-Cardiac-Lens-cholangiocellular-pineal-Fibroblast-rectum | 7 | 1.86e+1 | 1.30e-9 | 1.17e-7 |
C1284-mucinous-ductal-small-endometrial-adrenal-extraskeletal-large | 7 | 1.86e+1 | 1.30e-9 | 1.17e-7 |
C722-Mast-Natural-CD8-CD4-CD19-mature-Basophils | 4 | 6.76e+0 | 2.03e-3 | 1.18e-2 |
C1288-kidney-neuroectodermal-uterus-Mast-skin-rhabdomyosarcoma-ductus | 7 | 1.86e+1 | 1.30e-9 | 1.18e-7 |
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature | 151 | 1.26e+0 | 2.47e-3 | 1.39e-2 |
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34 | 27 | 2.21e+0 | 1.04e-4 | 1.45e-3 |
C1388-immature-CD14-Basophils-Mast-CD133-Peripheral-Natural | 3 | 9.30e+0 | 2.75e-3 | 1.51e-2 |
C1422-mature-CD14-Mast-Eosinophils-immature-heart-Neutrophils | 3 | 9.30e+0 | 2.75e-3 | 1.51e-2 |
C1453-argyrophil-hepatocellular-Intestinal-small-liver-hepatoblastoma-gastrointestinal | 3 | 9.30e+0 | 2.75e-3 | 1.51e-2 |
Details<b>Summary:</b>It includes sequences from the international sequence collaboration, Swiss-Prot, and RefSeq. The RefSeq subset of this file is also available as gene2refseq.<br><br>links to source dataset.<br>human <br>mouse
GeneID: | 10155 |
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LocusTag: | - |
chromosome: | 19 |
map location: | 19q13.4 |
type of gene: | protein-coding |
Symbol from nomenclature authority: | TRIM28 |
Full name from nomenclature authority: | tripartite motif containing 28 |
Nomenclature status: | O |
Other designations: | E3 SUMO-protein ligase TRIM28, KAP-1, KRAB-associated protein 1, KRAB-interacting protein 1, KRIP-1, RING finger protein 96, TIF1-beta, nuclear corepressor KAP-1, transcription intermediary factor 1-beta, transcriptional intermediary factor 1-beta, tripartite motif-containing 28, tripartite motif-containing protein 28, E3 SUMO-protein ligase TRIM28;;KAP-1;;KRAB-associated protein 1;;KRAB-interacting protein 1;;KRIP-1;;RING finger protein 96;;TIF1-beta;;nuclear corepressor KAP-1;;transcription intermediary factor 1-beta;;transcriptional intermediary factor 1-beta;;tripartite motif-containing 28;;tripartite motif-containing protein 28 |
Modification date: | 08.01.2012 |