FFCP PHASE1:Hg19::chr14:54423434..54423446,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652 | |EntrezGene=652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |HGNC=1071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-68bp_to_ENST00000558489_5end | |association_with_transcript=-68bp_to_ENST00000558489_5end | ||
|cluster_id=chr14:54423434..54423446,- | |||
|coexpression_cluster_id=C3433 | |||
|description=CAGE_peak_6_at_BMP4_5end | |description=CAGE_peak_6_at_BMP4_5end | ||
|id=chr14:54423434..54423446,- | |id=chr14:54423434..54423446,- | ||
|ontology_enrichment_celltype=CL:0000213!1.80e-27!57;CL:0000215!1.80e-27!57;CL:0002139!3.16e-22!24;CL:0002078!5.14e-20!44;CL:0000115!4.41e-19!35;CL:0000071!5.24e-16!18;CL:0002546!5.24e-16!18;CL:0000222!7.38e-14!119;CL:0000066!1.26e-12!254;CL:0000076!1.89e-12!62;CL:1000413!1.15e-11!9;CL:0002544!3.89e-08!6;CL:0002543!5.36e-08!6;CL:0005020!7.54e-08!6;CL:0002138!7.54e-08!6;CL:0005022!7.54e-08!6;CL:0000220!1.00e-07!246;CL:0002321!1.65e-07!248;CL:0000077!1.67e-07!19 | |ontology_enrichment_celltype=CL:0000213!1.80e-27!57;CL:0000215!1.80e-27!57;CL:0002139!3.16e-22!24;CL:0002078!5.14e-20!44;CL:0000115!4.41e-19!35;CL:0000071!5.24e-16!18;CL:0002546!5.24e-16!18;CL:0000222!7.38e-14!119;CL:0000066!1.26e-12!254;CL:0000076!1.89e-12!62;CL:1000413!1.15e-11!9;CL:0002544!3.89e-08!6;CL:0002543!5.36e-08!6;CL:0005020!7.54e-08!6;CL:0002138!7.54e-08!6;CL:0005022!7.54e-08!6;CL:0000220!1.00e-07!246;CL:0002321!1.65e-07!248;CL:0000077!1.67e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.64e-40;24!CL:0000115;2.28e-30;36!CL:0000071;1.57e-28;18!CL:1000413;3.18e-23;9!CL:0002078;4.17e-23;45!CL:0000213;6.62e-18;58!CL:0000215;6.62e-18;58!CL:0002544;4.61e-14;6!CL:0002138;2.08e-13;6!CL:0002543;2.19e-13;6!CL:0002618;2.51e-10;3!CL:0002178;5.43e-10;3!CL:1000746;1.28e-07;7!CL:1000612;1.28e-07;7!CL:0002545;1.64e-07;2!CL:0000076;3.40e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.80e-40,24;CL:0002078,2.17e-35,45;CL:0000115,3.76e-35,36;CL:0000213,1.43e-28,58;CL:0000215,1.43e-28,58;CL:0000071,1.54e-28,18;CL:0002546,1.54e-28,18;CL:1000413,4.60e-23,9;CL:0000066,1.20e-15,253;CL:0002544,6.73e-14,6;CL:0002543,1.53e-13,6;CL:0000222,1.76e-13,121;CL:0005020,3.17e-13,6;CL:0002138,3.17e-13,6;CL:0005022,3.17e-13,6;CL:0000076,1.04e-10,63;CL:0002618,2.56e-10,3;CL:0002178,6.18e-10,3;CL:0002321,1.25e-09,250;CL:1000746,1.13e-07,7;CL:1000612,1.13e-07,7;CL:0002545,2.37e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;1.57e-28;18!CL:0005022;2.08e-13;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3119;4.31e-13;14!DOID:4929;7.96e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,3.69e-13,14;DOID:4929,8.12e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0006914!3.36e-18!25;UBERON:0001986!5.24e-16!18;UBERON:0004638!5.24e-16!18;UBERON:0004852!5.24e-16!18;UBERON:0000487!7.43e-16!22;UBERON:0003915!1.15e-11!9;UBERON:0004700!1.15e-11!9;UBERON:0001917!1.15e-11!9;UBERON:0004111!2.76e-11!241;UBERON:0000477!8.29e-11!286;UBERON:0003914!7.25e-09!118;UBERON:0000483!3.80e-08!309;UBERON:0000119!7.62e-08!312;UBERON:0002049!7.98e-08!79;UBERON:0007798!7.98e-08!79;UBERON:0000490!1.09e-07!138;UBERON:0001638!1.40e-07!9;UBERON:0003920!1.40e-07!9;UBERON:0004582!1.40e-07!9;UBERON:0000055!4.26e-07!69;UBERON:0003064!5.40e-07!37;UBERON:0004122!7.68e-07!15;UBERON:0000025!9.02e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;2.21e-30;22!UBERON:0006914;7.77e-30;25!UBERON:0004638;1.57e-28;18!UBERON:0001986;1.57e-28;18!UBERON:0004852;1.57e-28;18!UBERON:0003915;3.18e-23;9!UBERON:0004700;3.18e-23;9!UBERON:0001917;3.18e-23;9!UBERON:0000490;1.01e-19;33!UBERON:0000945;1.72e-10;5!UBERON:0010039;1.72e-10;5!UBERON:0001473;5.76e-10;8!UBERON:0004536;5.76e-10;8!UBERON:0006558;5.76e-10;8!UBERON:0001638;8.39e-09;9!UBERON:0003920;8.39e-09;9!UBERON:0004582;8.39e-09;9!UBERON:0002465;6.75e-08;10!UBERON:0000058;1.26e-07;10!UBERON:0000074;1.28e-07;7!UBERON:0001229;1.28e-07;7!UBERON:0002394;1.36e-07;4!UBERON:0003928;1.36e-07;4!UBERON:0005800;1.64e-07;2!UBERON:0001515;1.64e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,1.71e-30,22;UBERON:0006914,6.99e-30,25;UBERON:0004638,1.54e-28,18;UBERON:0001986,1.54e-28,18;UBERON:0004852,1.54e-28,18;UBERON:0003915,4.60e-23,9;UBERON:0004700,4.60e-23,9;UBERON:0001917,4.60e-23,9;UBERON:0003914,4.52e-12,117;UBERON:0000058,4.59e-12,19;UBERON:0000055,4.05e-11,68;UBERON:0001473,7.84e-10,8;UBERON:0004536,7.84e-10,8;UBERON:0006558,7.84e-10,8;UBERON:0002049,3.90e-09,78;UBERON:0007798,3.90e-09,78;UBERON:0004111,6.12e-09,240;UBERON:0001638,6.65e-09,9;UBERON:0003920,6.65e-09,9;UBERON:0004582,6.65e-09,9;UBERON:0002465,8.59e-08,10;UBERON:0010532,1.13e-07,7;UBERON:0000074,1.13e-07,7;UBERON:0001229,1.13e-07,7;UBERON:0001230,1.13e-07,7;UBERON:0003220,1.13e-07,7;UBERON:0005749,1.13e-07,7;UBERON:0004199,1.13e-07,7;UBERON:0004209,1.13e-07,7;UBERON:0004198,1.13e-07,7;UBERON:0005800,2.37e-07,2;UBERON:0001515,2.37e-07,2;UBERON:0000490,2.83e-07,148;UBERON:0004876,3.83e-07,11;UBERON:0004535,6.19e-07,109;UBERON:0000025,9.63e-07,192 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0.331397375727916,0,0,0,0,0.246242116153576,0.408001382488506,0.626909442956176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02290049474824,0.361439152384566,0,1.15877215168659,0.795285947051099,0,0.0945348171640679,0.221729397462564,0.87834785693126,0,0,0,0,0,0,0,0,0,4.57153536943422,0.860234595106124,4.51282652089873,5.08777147731609,3.35599548967925,11.8300758034229,4.80688423034664,1.29208379584664,2.13459757612026,4.35136796594071,0,0,0.488124115096339,1.10298924103761,10.5318453224629,2.67899184852239,2.2452937262617,2.13961812918312,7.66583187329416,0.949265659568129,1.83201743930407,0,0,0,0,0,0,0,0,2.24271040056923,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0.323292113637624,0,0,0,0,0,0,0,0,0.348581828608555,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,2.20731549707325,0.368965315629341,0.343135620597051,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0.70445216541493,2.16549671641611,0.925971025153221,3.04406643575357,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.725156697549733,0,0,0.918515585316854,0.364182336013434,1.57349297951309,0,0,0,0,0,5.68666920354483,0,1.51141141271498,15.4227252690289,0.270946437543853,1.50506932156456,0,0,0,0,0,1.53870075069834,1.64007322849853,0.976135183992909,0,2.7470839445503,3.87794649626764,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.359744915166629,0.274537029736055,0,0,0,0,0.48763373908959,0.243713489631284,0,0.9554993798559,0.848432591722276,0,0,0.66343897524122,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,1.26664581178598,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,5.44802762750113,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,3.40963376167696,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,1.3480252672099,0.358042349351218,0,0.394573622547734,0,0,0.969332746095218,0,0,0,0.787139999965761,0,0,0,0,0,0,0,0,0,1.52581736317083,0.442317039724898,0,0,0,0.697118721393016,0.153900517007594,1.36730467016401,0,0,0,0,0.457987967009312,0,0,0,0,0,0,0,0,0,0,0.163232808159148,1.27217764290547,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.379119477770928,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0.859930162358083,0,0,0,0,0,0,0,0,0.126621591911757,0,0.0801588202515337,0.426905989478705,1.59847687665704,1.15272333723285,4.92507363513437,0,0,0,0,0,0,0,0,0,0,0,1.28929632425987,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,2.91497774536727,3.62629776877132,3.90940554354272,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.0788057072991982,0.262272940674991,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0.74988244777264,0,0,0,0,0,0.149254802886874,0,0,0,0.251567901752575,0,0,0,0,0,0.159296767163702,0,0,0.414706207840855,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0.398095888698616,0,0,0,1.26184898228651,0,1.28664954824955,0.260994291965212,0.226705925512272,0.231522474323834,0.244736704506468,0,0.617602894321944,3.28926074368061,0,0.38582807654183,0.168942440653073,0,0.345430341731199,0.607719912354764,0.138258436151731,0,0,0,0,0,0.211312123358627,0,0,0,2.83757976783418,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0.205116364240755,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.397832444232549,0.150420656698515,0,0,0,0,4.73139475894545,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,5.11049710558381,0,0,0,0,0.0887023701626388,0,0,0,0.197318320688547,0,0,0.313972371402056,0,1.40136081656895,0,0,0,1.07214816264985,0,0,0.695433089210318,1.60342272946051,0,0,0,0,0,0,0.423387050190929,0,0,0,0,4.41676051268593,0.243835849964539,0,0.102662806856247,0,0,0,1.79055697645231,0,1.58124514854544,0,0,0.154348316215889,0.218559560503957,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,1.20362050033752,0,0,0,0.473314686579554,0.0679914901909147,0,0,0.371995018166751,0.462175628631418,0,0.252332849670158,0.109265571963696,1.77377901416012,0.101988829741982,0,0.0918948995348449,0,0.0757786982182394,0.267964130156178,0,0,0.213233981900981,0,0,0,2.01837352645104,0.12729431655633,0,0,0.342233301085281,0,0.143444410785353,0,0.162806537221949,0,0,3.32353247794371,2.34640942403454,0.12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| ||
|short_description=p6@BMP4 | |short_description=p6@BMP4 | ||
}} | }} |
Latest revision as of 07:37, 20 September 2015
Short description: | p6@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_BMP4_5end |
Coexpression cluster: | C3433_teratocarcinoma_Saos2_signet_rectal_tubular_gastric_Wilms |
Association with transcript: | -68bp_to_ENST00000558489_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.80e-40 | 24 |
meso-epithelial cell | 2.17e-35 | 45 |
endothelial cell | 3.76e-35 | 36 |
lining cell | 1.43e-28 | 58 |
barrier cell | 1.43e-28 | 58 |
blood vessel endothelial cell | 1.54e-28 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.54e-28 | 18 |
endothelial cell of artery | 4.60e-23 | 9 |
epithelial cell | 1.20e-15 | 253 |
aortic endothelial cell | 6.73e-14 | 6 |
vein endothelial cell | 1.53e-13 | 6 |
mesodermal cell | 1.76e-13 | 121 |
lymphangioblast | 3.17e-13 | 6 |
endothelial cell of lymphatic vessel | 3.17e-13 | 6 |
vascular lymphangioblast | 3.17e-13 | 6 |
squamous epithelial cell | 1.04e-10 | 63 |
endothelial cell of umbilical vein | 2.56e-10 | 3 |
epithelial cell of stomach | 6.18e-10 | 3 |
embryonic cell | 1.25e-09 | 250 |
glomerular cell | 1.13e-07 | 7 |
kidney corpuscule cell | 1.13e-07 | 7 |
thoracic aorta endothelial cell | 2.37e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 1.71e-30 | 22 |
squamous epithelium | 6.99e-30 | 25 |
blood vessel endothelium | 1.54e-28 | 18 |
endothelium | 1.54e-28 | 18 |
cardiovascular system endothelium | 1.54e-28 | 18 |
endothelial tube | 4.60e-23 | 9 |
arterial system endothelium | 4.60e-23 | 9 |
endothelium of artery | 4.60e-23 | 9 |
epithelial tube | 4.52e-12 | 117 |
duct | 4.59e-12 | 19 |
vessel | 4.05e-11 | 68 |
lymphatic vessel | 7.84e-10 | 8 |
lymph vasculature | 7.84e-10 | 8 |
lymphatic part of lymphoid system | 7.84e-10 | 8 |
vasculature | 3.90e-09 | 78 |
vascular system | 3.90e-09 | 78 |
anatomical conduit | 6.12e-09 | 240 |
vein | 6.65e-09 | 9 |
venous blood vessel | 6.65e-09 | 9 |
venous system | 6.65e-09 | 9 |
lymphoid system | 8.59e-08 | 10 |
primitive nephron | 1.13e-07 | 7 |
renal glomerulus | 1.13e-07 | 7 |
renal corpuscle | 1.13e-07 | 7 |
glomerular capsule | 1.13e-07 | 7 |
metanephric mesenchyme | 1.13e-07 | 7 |
glomerular tuft | 1.13e-07 | 7 |
S-shaped body | 1.13e-07 | 7 |
renal vesicle | 1.13e-07 | 7 |
comma-shaped body | 1.13e-07 | 7 |
segment of aorta | 2.37e-07 | 2 |
thoracic aorta | 2.37e-07 | 2 |
unilaminar epithelium | 2.83e-07 | 148 |
urogenital ridge | 3.83e-07 | 11 |
cardiovascular system | 6.19e-07 | 109 |
tube | 9.63e-07 | 192 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 3.69e-13 | 14 |
tubular adenocarcinoma | 8.12e-08 | 2 |