FFCP PHASE1:Hg19::chr22:38480132..38480159,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23539 | |EntrezGene=23539 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16270 | |HGNC=16270 | ||
|TSSclassifier=strong | |||
|UniProt=B0QYL4 | |UniProt=B0QYL4 | ||
|association_with_transcript=-32bp_to_ENST00000427592,ENST00000469516_5end | |association_with_transcript=-32bp_to_ENST00000427592,ENST00000469516_5end | ||
|cluster_id=chr22:38480132..38480159,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_1_at_SLC16A8_5end | |description=CAGE_peak_1_at_SLC16A8_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002586!2.95e-31!3;CL:0000149!1.27e-23!4;CL:0002322!2.85e-18!5;CL:0000039!1.53e-13!7;CL:0000586!1.53e-13!7;CL:0000147!9.31e-12!14 | |ontology_enrichment_celltype=CL:0002586!2.95e-31!3;CL:0000149!1.27e-23!4;CL:0002322!2.85e-18!5;CL:0000039!1.53e-13!7;CL:0000586!1.53e-13!7;CL:0000147!9.31e-12!14 | ||
|ontology_enrichment_celltype_v019=CL:0002586;1.53e-44;3!CL:0000149;9.88e-34;4!CL:0000147;1.99e-10;14!CL:0002322;7.01e-08;5 | |ontology_enrichment_celltype_v019=CL:0002586;1.53e-44;3!CL:0000149;9.88e-34;4!CL:0000147;1.99e-10;14!CL:0002322;7.01e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.22e-44,3;CL:0000149,8.36e-34,4;CL:0000147,1.90e-10,14;CL:0002322,7.49e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.85e-12;3 | |ontology_enrichment_development_v019=UBERON:0003056;1.85e-12;3 | ||
|ontology_enrichment_disease=DOID:3095!3.19e-11!22;DOID:2994!3.19e-11!22 | |ontology_enrichment_disease=DOID:3095!3.19e-11!22;DOID:2994!3.19e-11!22 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!1.47e-50!5;UBERON:0005388!1.47e-50!5;UBERON:0001802!1.47e-50!5;UBERON:0001781!2.95e-31!3;UBERON:0001782!2.95e-31!3;UBERON:0005424!2.95e-31!3;UBERON:0000970!5.81e-18!20;UBERON:0002104!4.33e-17!21;UBERON:0000020!1.43e-15!23;UBERON:0001032!6.61e-15!24;UBERON:0004456!6.61e-15!24;UBERON:0000019!2.67e-13!19;UBERON:0000047!2.67e-13!19;UBERON:0004088!2.67e-13!19;UBERON:0003072!2.67e-13!19;UBERON:0003071!2.67e-13!19;UBERON:0004128!2.67e-13!19;UBERON:0001456!5.05e-12!21;UBERON:0000473!6.40e-12!8;UBERON:0007625!5.94e-09!11;UBERON:0003135!8.20e-09!11;UBERON:0005085!1.14e-08!29;UBERON:0003075!3.95e-08!86;UBERON:0007284!3.95e-08!86;UBERON:0005743!4.51e-08!86;UBERON:0000991!7.96e-08!21;UBERON:0009196!7.96e-08!21;UBERON:0009117!7.96e-08!21;UBERON:0005564!7.96e-08!21;UBERON:0002346!1.02e-07!90;UBERON:0004176!1.78e-07!22;UBERON:0000073!3.29e-07!94;UBERON:0001016!3.29e-07!94 | |ontology_enrichment_uberon=UBERON:0000966!1.47e-50!5;UBERON:0005388!1.47e-50!5;UBERON:0001802!1.47e-50!5;UBERON:0001781!2.95e-31!3;UBERON:0001782!2.95e-31!3;UBERON:0005424!2.95e-31!3;UBERON:0000970!5.81e-18!20;UBERON:0002104!4.33e-17!21;UBERON:0000020!1.43e-15!23;UBERON:0001032!6.61e-15!24;UBERON:0004456!6.61e-15!24;UBERON:0000019!2.67e-13!19;UBERON:0000047!2.67e-13!19;UBERON:0004088!2.67e-13!19;UBERON:0003072!2.67e-13!19;UBERON:0003071!2.67e-13!19;UBERON:0004128!2.67e-13!19;UBERON:0001456!5.05e-12!21;UBERON:0000473!6.40e-12!8;UBERON:0007625!5.94e-09!11;UBERON:0003135!8.20e-09!11;UBERON:0005085!1.14e-08!29;UBERON:0003075!3.95e-08!86;UBERON:0007284!3.95e-08!86;UBERON:0005743!4.51e-08!86;UBERON:0000991!7.96e-08!21;UBERON:0009196!7.96e-08!21;UBERON:0009117!7.96e-08!21;UBERON:0005564!7.96e-08!21;UBERON:0002346!1.02e-07!90;UBERON:0004176!1.78e-07!22;UBERON:0000073!3.29e-07!94;UBERON:0001016!3.29e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.10e-59;5!UBERON:0005388;1.10e-59;5!UBERON:0001802;1.10e-59;5!UBERON:0001781;1.53e-44;3!UBERON:0001782;1.53e-44;3!UBERON:0000970;5.93e-27;20!UBERON:0002104;1.05e-25;21!UBERON:0000020;1.55e-23;23!UBERON:0001032;1.38e-22;24!UBERON:0004456;1.38e-22;24!UBERON:0000019;2.05e-16;19!UBERON:0000047;2.05e-16;19!UBERON:0004088;2.05e-16;19!UBERON:0010230;2.05e-16;19!UBERON:0001456;6.23e-15;21!UBERON:0007625;5.42e-13;11 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.10e-59;5!UBERON:0005388;1.10e-59;5!UBERON:0001802;1.10e-59;5!UBERON:0001781;1.53e-44;3!UBERON:0001782;1.53e-44;3!UBERON:0000970;5.93e-27;20!UBERON:0002104;1.05e-25;21!UBERON:0000020;1.55e-23;23!UBERON:0001032;1.38e-22;24!UBERON:0004456;1.38e-22;24!UBERON:0000019;2.05e-16;19!UBERON:0000047;2.05e-16;19!UBERON:0004088;2.05e-16;19!UBERON:0010230;2.05e-16;19!UBERON:0001456;6.23e-15;21!UBERON:0007625;5.42e-13;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,5.37e-50,6;UBERON:0005388,5.37e-50,6;UBERON:0001802,5.37e-50,6;UBERON:0001782,1.22e-44,3;UBERON:0005424,1.22e-44,3;UBERON:0001781,8.36e-34,4;UBERON:0000970,9.82e-26,21;UBERON:0002104,9.82e-26,21;UBERON:0000020,1.30e-22,24;UBERON:0001032,1.30e-22,24;UBERON:0004456,1.30e-22,24;UBERON:0000019,1.17e-15,20;UBERON:0000047,1.17e-15,20;UBERON:0010312,1.17e-15,20;UBERON:0004088,1.17e-15,20;UBERON:0010230,1.17e-15,20;UBERON:0003072,1.17e-15,20;UBERON:0004128,1.17e-15,20;UBERON:0003071,1.17e-15,20;UBERON:0001456,2.61e-14,22;UBERON:0007625,5.10e-13,11;UBERON:0005085,2.22e-10,31;UBERON:0001444,8.07e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,1.06023814657188,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84675187674584,1.96808787419823,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8470755574656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0.968440444553616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.1070723232557,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0.253397002022874,0.61193297845189,1.60330443159336,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,1.06023814657188,0,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84675187674584,1.96808787419823,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8470755574656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0.968440444553616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.1070723232557,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0.253397002022874,0.61193297845189,1.60330443159336,0.275684698604535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@SLC16A8 | |short_description=p1@SLC16A8 | ||
}} | }} |
Latest revision as of 07:18, 20 September 2015
Short description: | p1@SLC16A8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC16A8_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | -32bp_to_ENST00000427592, ENST00000469516_5end |
EntrezGene: | SLC16A8 |
HGNC: | 16270 |
UniProt: | B0QYL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.22e-44 | 3 |
visual pigment cell | 8.36e-34 | 4 |
pigment cell | 1.90e-10 | 14 |
embryonic stem cell | 7.49e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
retina | 5.37e-50 | 6 |
photoreceptor array | 5.37e-50 | 6 |
posterior segment of eyeball | 5.37e-50 | 6 |
pigmented layer of retina | 1.22e-44 | 3 |
presumptive retinal pigmented epithelium | 1.22e-44 | 3 |
layer of retina | 8.36e-34 | 4 |
eye | 9.82e-26 | 21 |
visual system | 9.82e-26 | 21 |
sense organ | 1.30e-22 | 24 |
sensory system | 1.30e-22 | 24 |
entire sense organ system | 1.30e-22 | 24 |
camera-type eye | 1.17e-15 | 20 |
simple eye | 1.17e-15 | 20 |
immature eye | 1.17e-15 | 20 |
ocular region | 1.17e-15 | 20 |
eyeball of camera-type eye | 1.17e-15 | 20 |
optic cup | 1.17e-15 | 20 |
optic vesicle | 1.17e-15 | 20 |
eye primordium | 1.17e-15 | 20 |
face | 2.61e-14 | 22 |
pigment epithelium of eye | 5.10e-13 | 11 |
ectodermal placode | 2.22e-10 | 31 |
subdivision of head | 8.07e-07 | 49 |