FFCP PHASE1:Hg19::chr1:2066627..2066640,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5590 | |EntrezGene=5590 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9412 | |HGNC=9412 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-60bp_to_ENST00000419838_5end | |association_with_transcript=-60bp_to_ENST00000419838_5end | ||
|cluster_id=chr1:2066627..2066640,+ | |||
|coexpression_cluster_id=C227 | |coexpression_cluster_id=C227 | ||
|description=CAGE_peak_19_at_PRKCZ_5end | |description=CAGE_peak_19_at_PRKCZ_5end | ||
|id=chr1:2066627..2066640,+ | |id=chr1:2066627..2066640,+ | ||
|ontology_enrichment_celltype=CL:0002541!1.36e-14!3;CL:0002537!1.14e-08!5;CL:0000349!8.45e-07!3;CL:0002577!8.45e-07!3 | |ontology_enrichment_celltype=CL:0002541!1.36e-14!3;CL:0002537!1.14e-08!5;CL:0000349!8.45e-07!3;CL:0002577!8.45e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.35e-50;3!CL:0000349;2.24e-42;19!CL:0002537;1.78e-14;5!CL:0000723;9.72e-08;61!CL:0000134;1.24e-07;55!CL:0002577;9.37e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.35e-50,3;CL:0000349,2.31e-42,19;CL:0002537,1.84e-14,5;CL:0002577,8.15e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.12e-17;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:178;5.72e-18;1!DOID:326;5.72e-18;1!DOID:3978;5.72e-18;1!DOID:3394;5.72e-18;1!DOID:5844;5.72e-18;1!DOID:1799;1.12e-17;1!DOID:10165;1.12e-17;1!DOID:1798;1.12e-17;1!DOID:114;1.17e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:178,5.26e-18,1;DOID:326,5.26e-18,1;DOID:3978,5.26e-18,1;DOID:3394,5.26e-18,1;DOID:5844,5.26e-18,1;DOID:1799,1.03e-17,1;DOID:10165,1.03e-17,1;DOID:1798,1.03e-17,1;DOID:114,1.12e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.53e-30!14;UBERON:0000158!2.53e-30!14;UBERON:0003124!6.48e-23!7;UBERON:0000478!1.95e-20!24;UBERON:0000476!1.36e-14!3;UBERON:0000920!1.36e-14!3;UBERON:0001987!1.26e-10!4;UBERON:0004340!1.26e-10!4;UBERON:0000305!2.10e-10!7;UBERON:0004923!3.07e-10!57;UBERON:0004871!4.16e-09!8 | |ontology_enrichment_uberon=UBERON:0005631!2.53e-30!14;UBERON:0000158!2.53e-30!14;UBERON:0003124!6.48e-23!7;UBERON:0000478!1.95e-20!24;UBERON:0000476!1.36e-14!3;UBERON:0000920!1.36e-14!3;UBERON:0001987!1.26e-10!4;UBERON:0004340!1.26e-10!4;UBERON:0000305!2.10e-10!7;UBERON:0004923!3.07e-10!57;UBERON:0004871!4.16e-09!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.35e-50;3!UBERON:0000920;1.35e-50;3!UBERON:0000478;1.52e-43;24!UBERON:0005631;7.61e-42;10!UBERON:0000158;7.61e-42;10!UBERON:0001987;2.59e-17;4!UBERON:0000305;1.30e-10;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,4.39e-59,7;UBERON:0005631,1.13e-57,14;UBERON:0000158,1.13e-57,14;UBERON:0000920,1.35e-50,3;UBERON:0000478,1.44e-43,24;UBERON:0001987,1.86e-17,4;UBERON:0004340,1.86e-17,4;UBERON:0004923,5.10e-12,66;UBERON:0000305,1.33e-10,7;UBERON:0004871,2.16e-09,8 | |||
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| ||
|short_description=p19@PRKCZ | |short_description=p19@PRKCZ | ||
}} | }} |
Latest revision as of 04:46, 20 September 2015
Short description: | p19@PRKCZ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_PRKCZ_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | -60bp_to_ENST00000419838_5end |
EntrezGene: | PRKCZ |
HGNC: | 9412 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.35e-50 | 3 |
extraembryonic cell | 2.31e-42 | 19 |
amnion mesenchymal stem cell | 1.84e-14 | 5 |
placental epithelial cell | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chorion | 4.39e-59 | 7 |
extraembryonic membrane | 1.13e-57 | 14 |
membranous layer | 1.13e-57 | 14 |
egg chorion | 1.35e-50 | 3 |
extraembryonic structure | 1.44e-43 | 24 |
placenta | 1.86e-17 | 4 |
allantois | 1.86e-17 | 4 |
organ component layer | 5.10e-12 | 66 |
amnion | 1.33e-10 | 7 |
somatic layer of lateral plate mesoderm | 2.16e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 5.26e-18 | 1 |
ischemia | 5.26e-18 | 1 |
extrinsic cardiomyopathy | 5.26e-18 | 1 |
myocardial ischemia | 5.26e-18 | 1 |
myocardial infarction | 5.26e-18 | 1 |
islet cell tumor | 1.03e-17 | 1 |
endocrine pancreas cancer | 1.03e-17 | 1 |
pancreatic endocrine carcinoma | 1.03e-17 | 1 |
heart disease | 1.12e-09 | 2 |