FFCP PHASE1:Hg19::chr2:216259298..216259308,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216259298..216259308,- to FFCP PHASE1:Hg19::chr2:216259298..216259308,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt=Q59G22 | |UniProt=Q59G22 | ||
|association_with_transcript=-13bp_to_AB209287_5end | |||
|cluster_id=chr2:216259298..216259308,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_55_at_FN1_5end | |||
|id=chr2:216259298..216259308,- | |||
|ontology_enrichment_celltype=CL:0000055!3.20e-28!180;CL:0000057!1.84e-23!75;CL:0002371!3.83e-14!591;CL:0000144!8.76e-12!625;CL:0000680!1.25e-11!57;CL:0000056!1.25e-11!57;CL:0000355!1.25e-11!57;CL:0000183!5.77e-11!59;CL:0000187!2.98e-10!54;CL:0000048!4.53e-10!430;CL:0000723!1.39e-09!436;CL:0002620!1.41e-09!23;CL:0000034!3.00e-09!444;CL:0000548!6.25e-08!679;CL:0000004!6.25e-08!679;CL:0000255!6.25e-08!679;CL:0000393!6.92e-08!60;CL:0000211!6.92e-08!60;CL:0000012!1.48e-07!682;CL:0002334!1.81e-07!12;CL:0000192!7.13e-07!42;CL:0000514!7.13e-07!42;CL:0000359!9.13e-07!32;CL:0002494!9.93e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;6.27e-11;55!CL:0002620;9.59e-11;23!CL:0002334;1.66e-10;12!CL:0000723;2.60e-10;61!CL:0000057;1.31e-09;73!CL:0000048;6.57e-09;58!CL:0000349;1.05e-08;19!CL:0000034;1.28e-08;69!CL:0000680;8.67e-08;7!CL:0002320;2.57e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.80e-23,76;CL:0000048,2.70e-13,427;CL:0000723,4.09e-13,433;CL:0000034,2.65e-12,441;CL:0002320,7.66e-12,361;CL:0000134,9.75e-11,354;CL:0002620,1.20e-10,23;CL:0002334,2.14e-10,12;CL:0000349,1.09e-08,19;CL:0000219,1.73e-08,386 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.32e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;3.07e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.28e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.14e-14!83;UBERON:0002329!4.14e-14!83;UBERON:0003077!4.14e-14!83;UBERON:0003059!4.14e-14!83;UBERON:0007282!4.14e-14!83;UBERON:0009618!4.14e-14!83;UBERON:0007285!4.14e-14!83;UBERON:0005256!5.13e-13!143;UBERON:0004290!5.95e-12!70;UBERON:0004872!2.61e-11!84;UBERON:0003914!5.61e-11!118;UBERON:0001134!9.57e-11!61;UBERON:0002036!9.57e-11!61;UBERON:0003082!9.57e-11!61;UBERON:0000490!9.59e-11!138;UBERON:0002385!2.06e-10!63;UBERON:0001015!2.06e-10!63;UBERON:0000383!2.06e-10!63;UBERON:0000486!4.89e-10!82;UBERON:0002049!8.14e-10!79;UBERON:0007798!8.14e-10!79;UBERON:0004535!6.44e-09!110;UBERON:0001009!1.72e-08!113;UBERON:0001981!3.43e-08!60;UBERON:0007500!3.43e-08!60;UBERON:0004537!3.43e-08!60;UBERON:0006965!3.43e-08!60;UBERON:0001637!4.32e-08!42;UBERON:0003509!4.32e-08!42;UBERON:0004572!4.32e-08!42;UBERON:0002100!4.56e-08!216;UBERON:0000055!9.60e-08!69;UBERON:0004923!2.17e-07!57;UBERON:0003102!4.30e-07!95;UBERON:0000468!4.69e-07!659;UBERON:0000948!5.15e-07!24;UBERON:0005498!5.15e-07!24;UBERON:0004140!5.15e-07!24;UBERON:0009881!5.15e-07!24;UBERON:0004141!5.15e-07!24;UBERON:0003084!5.15e-07!24;UBERON:0007005!5.15e-07!24;UBERON:0004139!5.15e-07!24;UBERON:0004291!5.15e-07!24;UBERON:0004573!8.35e-07!33;UBERON:0004571!8.35e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;6.66e-09;6!UBERON:0002358;6.66e-09;6!UBERON:0003684;6.66e-09;6!UBERON:0001178;6.66e-09;6!UBERON:0002097;3.19e-07;41!UBERON:0000478;3.40e-07;24!UBERON:0002199;6.04e-07;46!UBERON:0002416;6.04e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.62e-12,371;UBERON:0002199,2.56e-09,46;UBERON:0002416,2.56e-09,46;UBERON:0002097,4.19e-09,41;UBERON:0003688,5.41e-09,6;UBERON:0002358,5.41e-09,6;UBERON:0003684,5.41e-09,6;UBERON:0001178,5.41e-09,6;UBERON:0005631,1.85e-07,14;UBERON:0000158,1.85e-07,14;UBERON:0000478,3.49e-07,24 | |||
|phase1_expression=2.90685406832891,7.92171938396638,2.96004248601539,6.00439790118782,2.68176656656373,3.48935409640147,0,0,0.783556884599516,0.245733936501509,0,1.09220686065086,2.37390280405608,0.495065411840187,1.32558950291166,0.672325146451775,0.602694528023977,0,0.975865597581014,0,0.816002764977012,0.626909442956176,0,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.767175371061182,0.722878304769133,2.50668955317945,0.869079113764942,21.4727205703797,43.3105034569346,0.0945348171640679,1.33037638477538,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0.694281003215189,1.69592382577203,1.25849830862972,0.550236083880135,0,0,0.35576626268671,0,0.402829317109147,0,0,0,0.81014194788176,0.267899184852239,0.22452937262617,0.225222960966644,1.53316637465883,0.949265659568129,0.183201743930407,0,0,0,9.93943903390637,3.67228483827281,5.95841313659485,9.75244510545967,3.19201543978521,0.560677600142307,1.06748995729705,5.67335361359468,2.8008993185979,1.48181739276657,0.817309515567294,3.63257826347835,6.33793516927999,0.468642863667593,2.18512053781224,1.1409436430889,2.39117888882882,0.704606991862589,0.161872944368132,0.421352420106746,0.61246251376468,0.368502951935304,0.826606249406124,0,1.48360157567134,0,0.718618141816238,1.0100166837244,0.500474079487857,1.10825646193673,0.877955241761676,1.22595118319608,0.751190294532984,1.24775401476023,3.58779271377724,1.06778694409284,3.81477422087211,4.80145753735044,1.64884046781502,6.1833729610951,0.558350568994769,5.06328996723799,2.33848812386877,5.55354303337052,2.30124746605748,1.45481451136931,3.90510551768276,1.5112814734146,0.339121184620975,0,0.272746120590835,0,0,0,0.348581828608555,0.10366105501537,0.504641701751257,0,0,1.28648187638577,0,4.64367928031979,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,1.47008711385542,2.53510069643662,2.94848165003288,1.18157981336281,0,0.491953754172454,0.514703430895577,1.09750285408626,0,0,0,0.977424915930974,0,0,0.231860809950154,1.99594780200897,0.288732895522148,0.925971025153221,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.283550194484773,1.43293636324557,0.290633938513962,0,0,0,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0,0.224262168690721,1.30788020649984,0.80672114403045,1.42198887333556,3.57656445851882,0,0.797814349754612,0,1.54324424557285,1.41849132023278,0.799266537048298,0,2.71310802695722,0.823240336780769,0,0.710783897485092,0.791951872933429,0,0.871533458600294,0,0,0,2.10833939483032,1.4377491329495,3.44585807502342,1.42636905040718,1.73737568001095,4.52047909610843,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.2269149171914,2.50085260529839,1.35632511849868,3.95144636908534,8.56459146226377,3.78485796081443,2.22568688486155,0.902838299183157,0,1.03473071292505,1.32845119707087,2.39679919104214,0.781952530212746,0.783204629850962,0.686286847621712,0,0,0,0,3.32870879020994,1.20956117331872,8.68377327365719,8.5938705041315,10.9457436828899,5.38184426873944,6.14048698880044,8.36440389946759,2.96836132889982,1.3878872442239,3.19611105563629,0.574890092096664,0,1.04589340613963,0.604297247958111,3.40860999515584,0,0.459257792658427,1.0925470080403,0.917870904715969,0,0.231046011313244,0,0,0.316654886678627,0,0,0.863663664408557,0,0.812839312631559,1.50506932156456,0,0,0.223874754722178,0,0,0,0.656029291399411,0.650756789328606,0.721287081534056,0,0,1.14853107599234,0,0,0.870036464629098,1.54048617114644,0.460511024178389,0.689182862422653,3.11518710117994,2.90033387828457,1.61930592090592,0.712256285173899,1.81813406897076,0.576570202095319,1.14851441245126,0.910420027699949,0.464845549297286,8.49993336442728,0.6970372701606,1.23213432070436,0,0.869932992075073,0.37064843820784,0.715624433709956,0.372158369359667,2.84741482246853,0.953150969619124,0.255897791311334,0,1.59101623962968,1.56989728039846,1.07923474549989,0.274537029736055,0.353437207037059,0.202182481573316,3.17020642346017,0.421258456238981,0,0.731140468893853,0,0.272999822815972,0.707027159768564,2.26016233240486,0,2.65375590096488,0.438450885253763,1.73632660280006,0,0.811641507850816,0.30982349809975,0,0.286822704408103,0.589494246078727,2.1400263088875,0,0.422215270595328,0.658589785919804,0,0,0,0,1.08890984861323,0.188287601553558,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.72986763370456,0.296964680832639,1.84296421259539,0,0,5.45412654612239,0,0,1.19548792950642,0,0,0,0,16.174058558414,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.797594390929008,0,0,0,30.9431124939962,2.47313502185028,87.9507380430747,0,0,0,0,0,0,0,0,0.632994193584081,0,0.424059214301822,0,0.995261931078505,0,0,0,0,0,0,2.40773294189637,0,0,0,0,1.18375320854817,0,0.30607276163049,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0.087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| ||
|short_description=p55@FN1 | |||
}} | }} |
Latest revision as of 03:14, 20 September 2015
Short description: | p55@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_55_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | -13bp_to_AB209287_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | Q59G22 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.80e-23 | 76 |
multi fate stem cell | 2.70e-13 | 427 |
somatic stem cell | 4.09e-13 | 433 |
stem cell | 2.65e-12 | 441 |
connective tissue cell | 7.66e-12 | 361 |
mesenchymal cell | 9.75e-11 | 354 |
skin fibroblast | 1.20e-10 | 23 |
preadipocyte | 2.14e-10 | 12 |
extraembryonic cell | 1.09e-08 | 19 |
motile cell | 1.73e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.62e-12 | 371 |
integument | 2.56e-09 | 46 |
integumental system | 2.56e-09 | 46 |
skin of body | 4.19e-09 | 41 |
omentum | 5.41e-09 | 6 |
peritoneum | 5.41e-09 | 6 |
abdominal cavity | 5.41e-09 | 6 |
visceral peritoneum | 5.41e-09 | 6 |
extraembryonic membrane | 1.85e-07 | 14 |
membranous layer | 1.85e-07 | 14 |
extraembryonic structure | 3.49e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.28e-07 | 14 |