FFCP PHASE1:Hg19::chr1:205226309..205226329,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9911 | |EntrezGene=9911 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24239 | |HGNC=24239 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IW47 | |UniProt=Q8IW47 | ||
|association_with_transcript=-29bp_to_ENST00000481950,uc001hcc.1_5end | |association_with_transcript=-29bp_to_ENST00000481950,uc001hcc.1_5end | ||
|cluster_id=chr1:205226309..205226329,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_4_at_TMCC2_5end | |description=CAGE_peak_4_at_TMCC2_5end | ||
|id=chr1:205226309..205226329,+ | |id=chr1:205226309..205226329,+ | ||
|ontology_enrichment_celltype=CL:0002586!5.07e-27!3;CL:0000149!1.96e-20!4;CL:0000242!3.77e-18!2;CL:0000312!8.32e-08!5;CL:0000095!1.24e-07!17;CL:0000123!1.24e-07!17;CL:0000325!1.35e-07!39 | |ontology_enrichment_celltype=CL:0002586!5.07e-27!3;CL:0000149!1.96e-20!4;CL:0000242!3.77e-18!2;CL:0000312!8.32e-08!5;CL:0000095!1.24e-07!17;CL:0000123!1.24e-07!17;CL:0000325!1.35e-07!39 | ||
|ontology_enrichment_celltype_v019=CL:0002586;5.31e-27;3!CL:0000149;1.56e-20;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.31e-27,3;CL:0000149,1.56e-20,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.39e-27;3!UBERON:0006238;2.82e-08;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3093;1.16e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.16e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000966!2.92e-44!5;UBERON:0005388!2.92e-44!5;UBERON:0001802!2.92e-44!5;UBERON:0000970!4.32e-27!20;UBERON:0001781!5.07e-27!3;UBERON:0001782!5.07e-27!3;UBERON:0005424!5.07e-27!3;UBERON:0002104!9.33e-26!21;UBERON:0000020!1.96e-23!23;UBERON:0001032!2.03e-22!24;UBERON:0004456!2.03e-22!24;UBERON:0000019!6.56e-22!19;UBERON:0000047!6.56e-22!19;UBERON:0004088!6.56e-22!19;UBERON:0003072!6.56e-22!19;UBERON:0003071!6.56e-22!19;UBERON:0004128!6.56e-22!19;UBERON:0001456!9.30e-20!21;UBERON:0007625!1.18e-19!11;UBERON:0001905!3.75e-19!2;UBERON:0002757!3.75e-19!2;UBERON:0010134!3.75e-19!2;UBERON:0002784!3.75e-19!2;UBERON:0005408!3.75e-19!2;UBERON:0001899!3.75e-19!2;UBERON:0003056!2.59e-15!61;UBERON:0003075!9.82e-15!86;UBERON:0007284!9.82e-15!86;UBERON:0005085!4.12e-14!29;UBERON:0002346!5.45e-14!90;UBERON:0000073!4.43e-13!94;UBERON:0001016!4.43e-13!94;UBERON:0005743!2.27e-12!86;UBERON:0001894!5.02e-12!7;UBERON:0006222!5.02e-12!7;UBERON:0004121!9.01e-12!169;UBERON:0000924!1.94e-11!173;UBERON:0006601!1.94e-11!173;UBERON:0003296!4.86e-10!4;UBERON:0010133!4.86e-10!4;UBERON:0001882!1.07e-09!1;UBERON:0005403!1.07e-09!1;UBERON:0000033!1.31e-09!123;UBERON:0000153!4.56e-09!129;UBERON:0007811!4.56e-09!129;UBERON:0001444!3.16e-08!48 | |ontology_enrichment_uberon=UBERON:0000966!2.92e-44!5;UBERON:0005388!2.92e-44!5;UBERON:0001802!2.92e-44!5;UBERON:0000970!4.32e-27!20;UBERON:0001781!5.07e-27!3;UBERON:0001782!5.07e-27!3;UBERON:0005424!5.07e-27!3;UBERON:0002104!9.33e-26!21;UBERON:0000020!1.96e-23!23;UBERON:0001032!2.03e-22!24;UBERON:0004456!2.03e-22!24;UBERON:0000019!6.56e-22!19;UBERON:0000047!6.56e-22!19;UBERON:0004088!6.56e-22!19;UBERON:0003072!6.56e-22!19;UBERON:0003071!6.56e-22!19;UBERON:0004128!6.56e-22!19;UBERON:0001456!9.30e-20!21;UBERON:0007625!1.18e-19!11;UBERON:0001905!3.75e-19!2;UBERON:0002757!3.75e-19!2;UBERON:0010134!3.75e-19!2;UBERON:0002784!3.75e-19!2;UBERON:0005408!3.75e-19!2;UBERON:0001899!3.75e-19!2;UBERON:0003056!2.59e-15!61;UBERON:0003075!9.82e-15!86;UBERON:0007284!9.82e-15!86;UBERON:0005085!4.12e-14!29;UBERON:0002346!5.45e-14!90;UBERON:0000073!4.43e-13!94;UBERON:0001016!4.43e-13!94;UBERON:0005743!2.27e-12!86;UBERON:0001894!5.02e-12!7;UBERON:0006222!5.02e-12!7;UBERON:0004121!9.01e-12!169;UBERON:0000924!1.94e-11!173;UBERON:0006601!1.94e-11!173;UBERON:0003296!4.86e-10!4;UBERON:0010133!4.86e-10!4;UBERON:0001882!1.07e-09!1;UBERON:0005403!1.07e-09!1;UBERON:0000033!1.31e-09!123;UBERON:0000153!4.56e-09!129;UBERON:0007811!4.56e-09!129;UBERON:0001444!3.16e-08!48 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.51e-63;5!UBERON:0005388;3.51e-63;5!UBERON:0001802;3.51e-63;5!UBERON:0001905;5.99e-41;2!UBERON:0002757;5.99e-41;2!UBERON:0010134;5.99e-41;2!UBERON:0005408;5.99e-41;2!UBERON:0001899;5.99e-41;2!UBERON:0001781;5.31e-27;3!UBERON:0001782;5.31e-27;3!UBERON:0000970;8.50e-25;20!UBERON:0002104;1.25e-23;21!UBERON:0000020;1.34e-21;23!UBERON:0003296;4.68e-21;4!UBERON:0010133;4.68e-21;4!UBERON:0002784;4.68e-21;4!UBERON:0001032;1.04e-20;24!UBERON:0004456;1.04e-20;24!UBERON:0000019;4.84e-17;19!UBERON:0000047;4.84e-17;19!UBERON:0004088;4.84e-17;19!UBERON:0010230;4.84e-17;19!UBERON:0001456;1.84e-15;21!UBERON:0001894;1.78e-12;7!UBERON:0002360;4.52e-11;2!UBERON:0000094;4.52e-11;2!UBERON:0010743;4.52e-11;2!UBERON:0007625;4.34e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,9.03e-53,6;UBERON:0005388,9.03e-53,6;UBERON:0001802,9.03e-53,6;UBERON:0001905,5.99e-41,2;UBERON:0002757,5.99e-41,2;UBERON:0010134,5.99e-41,2;UBERON:0005408,5.99e-41,2;UBERON:0001899,5.99e-41,2;UBERON:0001782,5.31e-27,3;UBERON:0005424,5.31e-27,3;UBERON:0000970,1.25e-23,21;UBERON:0002104,1.25e-23,21;UBERON:0003296,4.68e-21,4;UBERON:0010133,4.68e-21,4;UBERON:0002784,4.68e-21,4;UBERON:0000020,1.04e-20,24;UBERON:0001032,1.04e-20,24;UBERON:0004456,1.04e-20,24;UBERON:0001781,1.56e-20,4;UBERON:0000019,3.27e-16,20;UBERON:0000047,3.27e-16,20;UBERON:0010312,3.27e-16,20;UBERON:0004088,3.27e-16,20;UBERON:0010230,3.27e-16,20;UBERON:0003072,3.27e-16,20;UBERON:0004128,3.27e-16,20;UBERON:0003071,3.27e-16,20;UBERON:0001456,8.89e-15,22;UBERON:0001894,1.78e-12,7;UBERON:0006222,1.78e-12,7;UBERON:0003056,1.72e-11,61;UBERON:0002360,4.52e-11,2;UBERON:0000094,4.52e-11,2;UBERON:0010743,4.52e-11,2;UBERON:0005085,1.34e-10,31;UBERON:0003075,1.48e-08,82;UBERON:0007284,1.48e-08,82;UBERON:0002346,3.73e-08,86;UBERON:0007625,4.34e-08,11;UBERON:0004121,6.38e-07,171;UBERON:0000924,6.38e-07,171;UBERON:0006601,6.38e-07,171;UBERON:0001444,8.12e-07,49;UBERON:0010371,1.00e-06,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,5.64190275256056,2.95213181129735,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9485555585399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,35.2789019087389,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895260599125562,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.8206193320886,65.5753258326707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.5218276003786,43.927784061698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.076973167249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,5.64190275256056,2.95213181129735,0.976135183992909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,1.97446857438575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9485555585399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,35.2789019087389,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895260599125562,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.8206193320886,65.5753258326707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.5218276003786,43.927784061698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.076973167249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126698501011437,0,0,0.18378979906969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@TMCC2 | |short_description=p4@TMCC2 | ||
}} | }} |
Latest revision as of 02:32, 20 September 2015
Short description: | p4@TMCC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TMCC2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -29bp_to_ENST00000481950, uc001hcc.1_5end |
EntrezGene: | TMCC2 |
HGNC: | 24239 |
UniProt: | Q8IW47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.31e-27 | 3 |
visual pigment cell | 1.56e-20 | 4 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.16e-07 | 11 |