FFCP PHASE1:Hg19::chr17:38645088..38645099,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:38645088..38645099,-
|short_description=p20@TNS4
|description=CAGE_peak_20_at_TNS4_5end
|association_with_transcript=72bp_to_AK027856_5end
|EntrezGene=84...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=84951 | |EntrezGene=84951 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=24352 | |HGNC=24352 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IZW8 | |UniProt=Q8IZW8 | ||
|association_with_transcript=72bp_to_AK027856_5end | |||
|cluster_id=chr17:38645088..38645099,- | |||
|coexpression_cluster_id=C436 | |||
|description=CAGE_peak_20_at_TNS4_5end | |||
|id=chr17:38645088..38645099,- | |||
|ontology_enrichment_celltype=CL:0002076!7.79e-29!43;CL:0000223!1.17e-23!59;CL:0002368!6.59e-20!13;CL:0000066!1.26e-18!254;CL:0000622!1.44e-17!5;CL:0002159!4.96e-16!13;CL:0000154!1.41e-14!6;CL:0002251!2.73e-13!21;CL:0000068!2.62e-11!3;CL:0000069!2.62e-11!3;CL:0000307!2.62e-11!3;CL:0000377!2.62e-11!3;CL:0002623!3.43e-11!3;CL:0000362!4.89e-11!8;CL:0000240!1.33e-09!6;CL:0000311!1.33e-09!6;CL:0000079!1.33e-09!6;CL:0000237!1.33e-09!6;CL:0000036!1.33e-09!6;CL:0000357!1.33e-09!6;CL:0000114!1.33e-09!6;CL:0000150!1.39e-09!9;CL:0002202!1.88e-09!9;CL:0002632!1.88e-09!9;CL:0000317!4.36e-08!2;CL:1000448!4.36e-08!2;CL:0002308!4.36e-08!2;CL:0002140!4.36e-08!2;CL:0000575!7.51e-08!2;CL:0000312!4.75e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002231;1.22e-27;3!CL:0000307;1.22e-27;3!CL:0000362;2.11e-20;9!CL:0000312;7.51e-17;5!CL:0000622;1.12e-16;5!CL:0002368;1.89e-14;13!CL:0000240;3.25e-14;6!CL:0000311;3.25e-14;6!CL:0000079;3.25e-14;6!CL:0000237;3.25e-14;6!CL:0000154;4.53e-14;6!CL:0002159;2.25e-13;14!CL:0002076;1.63e-11;42!CL:0000317;3.70e-11;2!CL:1000448;3.70e-11;2!CL:0002308;3.70e-11;2!CL:0002140;3.70e-11;2!CL:0002202;6.78e-10;9!CL:0002632;6.78e-10;9!CL:0000150;1.05e-09;9!CL:0002623;7.25e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.22e-27,3;CL:0000069,1.22e-27,3;CL:0000307,1.22e-27,3;CL:0000377,1.22e-27,3;CL:0002231,1.59e-27,3;CL:0000362,1.73e-20,9;CL:0002076,5.54e-17,42;CL:0000312,6.40e-17,5;CL:0000622,1.12e-16,5;CL:0002368,1.73e-14,13;CL:0000240,2.85e-14,6;CL:0000311,2.85e-14,6;CL:0000079,2.85e-14,6;CL:0000237,2.85e-14,6;CL:0000036,2.85e-14,6;CL:0000357,2.85e-14,6;CL:0000114,2.85e-14,6;CL:0000154,4.53e-14,6;CL:0002159,1.98e-13,14;CL:0000223,2.74e-12,58;CL:0000317,3.35e-11,2;CL:1000448,3.35e-11,2;CL:0002308,3.35e-11,2;CL:0002140,3.35e-11,2;CL:0002202,6.78e-10,9;CL:0002632,6.78e-10,9;CL:0000150,1.05e-09,9;CL:0002623,7.76e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000377;1.22e-27;3!CL:0000357;3.25e-14;6!CL:0000114;3.25e-14;6!CL:0000223;1.01e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;6.31e-21;1!DOID:3149;6.31e-21;1!DOID:3451;3.70e-11;2!DOID:4159;3.70e-11;2!DOID:0060122;3.70e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.43e-21,1;DOID:3149,9.43e-21,1;DOID:3451,4.52e-11,2;DOID:4159,4.52e-11,2;DOID:0060122,4.52e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0001004!7.62e-20!72;UBERON:0004119!3.10e-19!169;UBERON:0000925!3.10e-19!169;UBERON:0006595!3.10e-19!169;UBERON:0000161!3.00e-17!35;UBERON:0003102!5.99e-14!95;UBERON:0000166!1.63e-13!21;UBERON:0001007!8.64e-12!155;UBERON:0001555!8.64e-12!155;UBERON:0007026!8.64e-12!155;UBERON:0000165!1.00e-11!28;UBERON:0000930!1.00e-11!28;UBERON:0000065!2.66e-10!53;UBERON:0000077!3.76e-10!130;UBERON:0003729!5.01e-10!5;UBERON:0001044!1.39e-09!6;UBERON:0003293!1.39e-09!6;UBERON:0003294!1.39e-09!6;UBERON:0010047!1.39e-09!6;UBERON:0000167!1.39e-09!6;UBERON:0002530!5.35e-09!59;UBERON:0000344!1.30e-08!12;UBERON:0001444!1.45e-08!48;UBERON:0003408!3.06e-08!10;UBERON:0004921!3.13e-08!129;UBERON:0004185!3.13e-08!129;UBERON:0002419!4.36e-08!2;UBERON:0007771!4.36e-08!2;UBERON:0003297!4.36e-08!2;UBERON:0001821!4.36e-08!2;UBERON:0003487!4.36e-08!2;UBERON:0001820!4.36e-08!2;UBERON:0005089!4.36e-08!2;UBERON:0005088!4.36e-08!2;UBERON:0005631!5.55e-08!14;UBERON:0000158!5.55e-08!14;UBERON:0003343!2.54e-07!4;UBERON:0004785!2.54e-07!4;UBERON:0001041!3.29e-07!98;UBERON:0005911!3.79e-07!82;UBERON:0002365!3.91e-07!31;UBERON:0002330!3.91e-07!31;UBERON:0005153!7.42e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;1.58e-12;15!UBERON:0007376;1.58e-12;15!UBERON:0003126;1.89e-12;7!UBERON:0001005;1.89e-12;7!UBERON:0002419;3.70e-11;2!UBERON:0007771;3.70e-11;2!UBERON:0003297;3.70e-11;2!UBERON:0001821;3.70e-11;2!UBERON:0003487;3.70e-11;2!UBERON:0001820;3.70e-11;2!UBERON:0002367;2.92e-08;11!UBERON:0010147;2.92e-08;11!UBERON:0002097;1.11e-07;41!UBERON:0003937;1.20e-07;12!UBERON:0005399;1.20e-07;12!UBERON:0002199;4.09e-07;46!UBERON:0002416;4.09e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,1.41e-12,15;UBERON:0007376,1.41e-12,15;UBERON:0007383,1.41e-12,15;UBERON:0003126,1.89e-12,7;UBERON:0001005,1.89e-12,7;UBERON:0002419,3.35e-11,2;UBERON:0007771,3.35e-11,2;UBERON:0003297,3.35e-11,2;UBERON:0001821,3.35e-11,2;UBERON:0003487,3.35e-11,2;UBERON:0001820,3.35e-11,2;UBERON:0005089,3.35e-11,2;UBERON:0005088,3.35e-11,2;UBERON:0003102,1.46e-09,99;UBERON:0002367,3.14e-08,11;UBERON:0010147,3.14e-08,11;UBERON:0009846,3.14e-08,11;UBERON:0003353,3.14e-08,11;UBERON:0004902,3.14e-08,11;UBERON:0003820,3.14e-08,11;UBERON:0009847,3.14e-08,11;UBERON:0002097,4.47e-08,41;UBERON:0003937,1.29e-07,12;UBERON:0005399,1.29e-07,12;UBERON:0002199,3.14e-07,46;UBERON:0002416,3.14e-07,46 | |||
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| ||
|short_description=p20@TNS4 | |||
}} | }} |
Latest revision as of 02:14, 20 September 2015
Short description: | p20@TNS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_TNS4_5end |
Coexpression cluster: | C436_Sebocyte_Prostate_Keratinocyte_Urothelial_Small_Mammary_salivary |
Association with transcript: | 72bp_to_AK027856_5end |
EntrezGene: | TNS4 |
HGNC: | 24352 |
UniProt: | Q8IZW8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.22e-27 | 3 |
branched duct epithelial cell | 1.22e-27 | 3 |
tracheal epithelial cell | 1.22e-27 | 3 |
tracheoblast | 1.22e-27 | 3 |
epithelial cell of prostate | 1.59e-27 | 3 |
epidermal cell | 1.73e-20 | 9 |
endo-epithelial cell | 5.54e-17 | 42 |
keratinocyte | 6.40e-17 | 5 |
acinar cell | 1.12e-16 | 5 |
respiratory epithelial cell | 1.73e-14 | 13 |
stratified squamous epithelial cell | 2.85e-14 | 6 |
keratin accumulating cell | 2.85e-14 | 6 |
stratified epithelial cell | 2.85e-14 | 6 |
keratinizing barrier epithelial cell | 2.85e-14 | 6 |
epithelial fate stem cell | 2.85e-14 | 6 |
stratified epithelial stem cell | 2.85e-14 | 6 |
surface ectodermal cell | 2.85e-14 | 6 |
protein secreting cell | 4.53e-14 | 6 |
general ecto-epithelial cell | 1.98e-13 | 14 |
endodermal cell | 2.74e-12 | 58 |
sebum secreting cell | 3.35e-11 | 2 |
epithelial cell of sweat gland | 3.35e-11 | 2 |
epithelial cell of skin gland | 3.35e-11 | 2 |
acinar cell of sebaceous gland | 3.35e-11 | 2 |
epithelial cell of tracheobronchial tree | 6.78e-10 | 9 |
epithelial cell of lower respiratory tract | 6.78e-10 | 9 |
glandular epithelial cell | 1.05e-09 | 9 |
acinar cell of salivary gland | 7.76e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 1.41e-12 | 15 |
outer epithelium | 1.41e-12 | 15 |
enveloping layer of ectoderm | 1.41e-12 | 15 |
trachea | 1.89e-12 | 7 |
respiratory airway | 1.89e-12 | 7 |
skin gland | 3.35e-11 | 2 |
epidermis gland | 3.35e-11 | 2 |
gland of integumental system | 3.35e-11 | 2 |
sebaceous gland | 3.35e-11 | 2 |
skin sebaceous gland | 3.35e-11 | 2 |
sweat gland | 3.35e-11 | 2 |
sweat gland placode | 3.35e-11 | 2 |
sebaceous gland placode | 3.35e-11 | 2 |
surface structure | 1.46e-09 | 99 |
prostate gland | 3.14e-08 | 11 |
male accessory sex gland | 3.14e-08 | 11 |
embryonic cloacal epithelium | 3.14e-08 | 11 |
epithelium of hindgut | 3.14e-08 | 11 |
urogenital sinus epithelium | 3.14e-08 | 11 |
prostate bud | 3.14e-08 | 11 |
prostate field | 3.14e-08 | 11 |
skin of body | 4.47e-08 | 41 |
sex gland | 1.29e-07 | 12 |
male reproductive gland | 1.29e-07 | 12 |
integument | 3.14e-07 | 46 |
integumental system | 3.14e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.43e-21 | 1 |
keratoacanthoma | 9.43e-21 | 1 |
skin carcinoma | 4.52e-11 | 2 |
skin cancer | 4.52e-11 | 2 |
integumentary system cancer | 4.52e-11 | 2 |