FFCP PHASE1:Hg19::chr18:56940663..56940691,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=30062 | |EntrezGene=30062 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18662 | |HGNC=18662 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y2V3 | |UniProt=Q9Y2V3 | ||
|association_with_transcript=-38bp_to_ENST00000334889,NM_013435,uc002lhx.2,uc010dpp.2_5end | |association_with_transcript=-38bp_to_ENST00000334889,NM_013435,uc002lhx.2,uc010dpp.2_5end | ||
|cluster_id=chr18:56940663..56940691,- | |||
|description=CAGE_peak_2_at_RAX_5end | |description=CAGE_peak_2_at_RAX_5end | ||
|id=chr18:56940663..56940691,- | |id=chr18:56940663..56940691,- | ||
|ontology_enrichment_celltype=CL:0002322!8.23e-18!5;CL:0002586!5.52e-12!3;CL:0000147!5.71e-12!14;CL:0000064!1.17e-11!3;CL:0005012!1.17e-11!3;CL:0000067!1.17e-11!3;CL:0002304!1.17e-11!3;CL:0000149!4.43e-09!4;CL:0000039!6.37e-08!7;CL:0000586!6.37e-08!7;CL:0000075!2.55e-07!27 | |ontology_enrichment_celltype=CL:0002322!8.23e-18!5;CL:0002586!5.52e-12!3;CL:0000147!5.71e-12!14;CL:0000064!1.17e-11!3;CL:0005012!1.17e-11!3;CL:0000067!1.17e-11!3;CL:0002304!1.17e-11!3;CL:0000149!4.43e-09!4;CL:0000039!6.37e-08!7;CL:0000586!6.37e-08!7;CL:0000075!2.55e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000147;2.13e-28;14!CL:0002322;2.60e-26;5!CL:0002586;4.46e-26;3!CL:0000064;2.73e-25;3!CL:0000067;2.73e-25;3!CL:0005012;2.73e-25;3!CL:0002304;2.73e-25;3!CL:0000149;1.01e-19;4!CL:0000075;1.62e-18;27!CL:0000710;2.34e-14;20!CL:0002321;1.21e-13;15!CL:0000342;1.06e-09;1!CL:0002565;1.06e-09;1!CL:0000306;2.41e-09;4!CL:0002222;2.41e-09;4!CL:0002224;2.41e-09;4!CL:0002077;4.00e-08;34!CL:0000148;5.99e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.27e-28,14;CL:0002322,2.78e-26,5;CL:0002586,3.45e-26,3;CL:0000064,2.04e-25,3;CL:0000067,2.04e-25,3;CL:0005012,2.04e-25,3;CL:0002304,2.04e-25,3;CL:0000149,8.33e-20,4;CL:0000075,1.57e-18,27;CL:0000710,2.23e-14,20;CL:0000133,1.04e-09,59;CL:0000342,1.36e-09,1;CL:0002565,1.36e-09,1;CL:0000306,2.46e-09,4;CL:0002222,2.46e-09,4;CL:0002224,2.46e-09,4;CL:0002077,2.86e-08,34;CL:0000148,6.22e-08,10;CL:0000541,6.22e-08,10;CL:0000221,8.95e-08,72 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.57e-12;3 | |||
|ontology_enrichment_disease=DOID:3095!9.82e-07!22;DOID:2994!9.82e-07!22 | |ontology_enrichment_disease=DOID:3095!9.82e-07!22;DOID:2994!9.82e-07!22 | ||
|ontology_enrichment_disease_v019=DOID:5409;2.41e-09;4!DOID:4362;1.32e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.46e-09,4;DOID:4362,1.36e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0007625!9.39e-26!11;UBERON:0000970!3.08e-24!20;UBERON:0002104!6.06e-23!21;UBERON:0000019!2.10e-21!19;UBERON:0000047!2.10e-21!19;UBERON:0004088!2.10e-21!19;UBERON:0003072!2.10e-21!19;UBERON:0003071!2.10e-21!19;UBERON:0004128!2.10e-21!19;UBERON:0000020!1.08e-20!23;UBERON:0001032!1.04e-19!24;UBERON:0004456!1.04e-19!24;UBERON:0001456!4.03e-19!21;UBERON:0000966!6.28e-19!5;UBERON:0005388!6.28e-19!5;UBERON:0001802!6.28e-19!5;UBERON:0003056!1.06e-15!61;UBERON:0000488!5.97e-15!4;UBERON:0005085!3.81e-13!29;UBERON:0001781!5.52e-12!3;UBERON:0001782!5.52e-12!3;UBERON:0005424!5.52e-12!3;UBERON:0001778!1.17e-11!3;UBERON:0001775!1.17e-11!3;UBERON:0002346!1.25e-11!90;UBERON:0003075!4.65e-11!86;UBERON:0007284!4.65e-11!86;UBERON:0000924!4.77e-10!173;UBERON:0006601!4.77e-10!173;UBERON:0002203!5.73e-10!6;UBERON:0001768!5.73e-10!6;UBERON:0004121!1.58e-09!169;UBERON:0000073!4.20e-09!94;UBERON:0001016!4.20e-09!94;UBERON:0001801!7.64e-09!14;UBERON:0001444!2.81e-08!48;UBERON:0003296!2.92e-08!4;UBERON:0010133!2.92e-08!4;UBERON:0005743!3.94e-08!86;UBERON:0000033!6.91e-08!123;UBERON:0001894!8.56e-08!7;UBERON:0006222!8.56e-08!7;UBERON:0001905!1.06e-07!2;UBERON:0002757!1.06e-07!2;UBERON:0010134!1.06e-07!2;UBERON:0002784!1.06e-07!2;UBERON:0005408!1.06e-07!2;UBERON:0001899!1.06e-07!2;UBERON:0000153!2.68e-07!129;UBERON:0007811!2.68e-07!129 | |ontology_enrichment_uberon=UBERON:0007625!9.39e-26!11;UBERON:0000970!3.08e-24!20;UBERON:0002104!6.06e-23!21;UBERON:0000019!2.10e-21!19;UBERON:0000047!2.10e-21!19;UBERON:0004088!2.10e-21!19;UBERON:0003072!2.10e-21!19;UBERON:0003071!2.10e-21!19;UBERON:0004128!2.10e-21!19;UBERON:0000020!1.08e-20!23;UBERON:0001032!1.04e-19!24;UBERON:0004456!1.04e-19!24;UBERON:0001456!4.03e-19!21;UBERON:0000966!6.28e-19!5;UBERON:0005388!6.28e-19!5;UBERON:0001802!6.28e-19!5;UBERON:0003056!1.06e-15!61;UBERON:0000488!5.97e-15!4;UBERON:0005085!3.81e-13!29;UBERON:0001781!5.52e-12!3;UBERON:0001782!5.52e-12!3;UBERON:0005424!5.52e-12!3;UBERON:0001778!1.17e-11!3;UBERON:0001775!1.17e-11!3;UBERON:0002346!1.25e-11!90;UBERON:0003075!4.65e-11!86;UBERON:0007284!4.65e-11!86;UBERON:0000924!4.77e-10!173;UBERON:0006601!4.77e-10!173;UBERON:0002203!5.73e-10!6;UBERON:0001768!5.73e-10!6;UBERON:0004121!1.58e-09!169;UBERON:0000073!4.20e-09!94;UBERON:0001016!4.20e-09!94;UBERON:0001801!7.64e-09!14;UBERON:0001444!2.81e-08!48;UBERON:0003296!2.92e-08!4;UBERON:0010133!2.92e-08!4;UBERON:0005743!3.94e-08!86;UBERON:0000033!6.91e-08!123;UBERON:0001894!8.56e-08!7;UBERON:0006222!8.56e-08!7;UBERON:0001905!1.06e-07!2;UBERON:0002757!1.06e-07!2;UBERON:0010134!1.06e-07!2;UBERON:0002784!1.06e-07!2;UBERON:0005408!1.06e-07!2;UBERON:0001899!1.06e-07!2;UBERON:0000153!2.68e-07!129;UBERON:0007811!2.68e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;5.91e-60;11!UBERON:0000970;2.11e-58;20!UBERON:0002104;1.56e-55;21!UBERON:0000019;1.60e-51;19!UBERON:0000047;1.60e-51;19!UBERON:0004088;1.60e-51;19!UBERON:0010230;1.60e-51;19!UBERON:0000020;1.54e-50;23!UBERON:0001032;2.35e-48;24!UBERON:0004456;2.35e-48;24!UBERON:0001456;1.86e-46;21!UBERON:0000966;1.44e-42;5!UBERON:0005388;1.44e-42;5!UBERON:0001802;1.44e-42;5!UBERON:0000488;3.27e-33;4!UBERON:0001781;4.46e-26;3!UBERON:0001782;4.46e-26;3!UBERON:0001778;2.73e-25;3!UBERON:0001775;2.73e-25;3!UBERON:0002203;2.95e-22;6!UBERON:0001768;2.95e-22;6!UBERON:0002200;2.95e-22;6!UBERON:0001801;6.84e-21;14!UBERON:0010371;1.88e-19;31!UBERON:0001444;1.18e-13;48!UBERON:0000033;8.15e-13;50!UBERON:0006876;2.97e-12;11!UBERON:0002506;1.06e-09;1!UBERON:0001769;1.06e-09;1!UBERON:0007811;1.56e-09;52!UBERON:0010077;2.41e-09;4!UBERON:0005389;2.41e-09;4!UBERON:0000484;2.41e-09;4!UBERON:0000965;2.41e-09;4!UBERON:0001803;2.41e-09;4!UBERON:0000153;4.50e-09;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.81e-60,11;UBERON:0000970,1.32e-55,21;UBERON:0002104,1.32e-55,21;UBERON:0000019,6.21e-49,20;UBERON:0000047,6.21e-49,20;UBERON:0010312,6.21e-49,20;UBERON:0004088,6.21e-49,20;UBERON:0010230,6.21e-49,20;UBERON:0003072,6.21e-49,20;UBERON:0004128,6.21e-49,20;UBERON:0003071,6.21e-49,20;UBERON:0000020,2.03e-48,24;UBERON:0001032,2.03e-48,24;UBERON:0004456,2.03e-48,24;UBERON:0001456,2.47e-44,22;UBERON:0000966,1.38e-35,6;UBERON:0005388,1.38e-35,6;UBERON:0001802,1.38e-35,6;UBERON:0000488,3.14e-33,4;UBERON:0005085,5.74e-31,31;UBERON:0001782,3.45e-26,3;UBERON:0005424,3.45e-26,3;UBERON:0001778,2.04e-25,3;UBERON:0001775,2.04e-25,3;UBERON:0002203,2.87e-22,6;UBERON:0001768,2.87e-22,6;UBERON:0002200,2.87e-22,6;UBERON:0001801,6.84e-21,14;UBERON:0001781,8.33e-20,4;UBERON:0001444,6.05e-19,49;UBERON:0000033,2.36e-16,56;UBERON:0000153,1.35e-14,62;UBERON:0007811,1.35e-14,62;UBERON:0003056,1.35e-14,61;UBERON:0006876,2.93e-12,11;UBERON:0003075,1.91e-10,82;UBERON:0007284,1.91e-10,82;UBERON:0002346,7.00e-10,86;UBERON:0002506,1.36e-09,1;UBERON:0001769,1.36e-09,1;UBERON:0010077,2.46e-09,4;UBERON:0005389,2.46e-09,4;UBERON:0000484,2.46e-09,4;UBERON:0002546,2.46e-09,4;UBERON:0000965,2.46e-09,4;UBERON:0001803,2.46e-09,4;UBERON:0003073,2.46e-09,4;UBERON:0005426,2.46e-09,4;UBERON:0010371,7.06e-08,104;UBERON:0001048,8.32e-08,160 | |||
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| ||
|short_description=p2@RAX | |short_description=p2@RAX | ||
}} | }} |
Latest revision as of 01:18, 20 September 2015
Short description: | p2@RAX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAX_5end |
Coexpression cluster: | NA |
Association with transcript: | -38bp_to_ENST00000334889, NM_013435, uc002lhx.2, uc010dpp.2_5end |
EntrezGene: | RAX |
HGNC: | 18662 |
UniProt: | Q9Y2V3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.27e-28 | 14 |
embryonic stem cell | 2.78e-26 | 5 |
retinal pigment epithelial cell | 3.45e-26 | 3 |
ciliated cell | 2.04e-25 | 3 |
ciliated epithelial cell | 2.04e-25 | 3 |
multi-ciliated epithelial cell | 2.04e-25 | 3 |
non-pigmented ciliary epithelial cell | 2.04e-25 | 3 |
visual pigment cell | 8.33e-20 | 4 |
columnar/cuboidal epithelial cell | 1.57e-18 | 27 |
neurecto-epithelial cell | 2.23e-14 | 20 |
neurectodermal cell | 1.04e-09 | 59 |
pigment cell (sensu Vertebrata) | 1.36e-09 | 1 |
iris pigment epithelial cell | 1.36e-09 | 1 |
crystallin accumulating cell | 2.46e-09 | 4 |
vertebrate lens cell | 2.46e-09 | 4 |
lens epithelial cell | 2.46e-09 | 4 |
ecto-epithelial cell | 2.86e-08 | 34 |
melanocyte | 6.22e-08 | 10 |
melanoblast | 6.22e-08 | 10 |
ectodermal cell | 8.95e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.46e-09 | 4 |
cervical cancer | 1.36e-07 | 5 |