FFCP PHASE1:Hg19::chr11:70963843..70963872,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22941 | |EntrezGene=22941 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14295 | |HGNC=14295 | ||
|TSSclassifier=strong | |||
|UniProt=C9JFP8 | |UniProt=C9JFP8 | ||
|association_with_transcript=-220bp_to_ENST00000413503_5end | |association_with_transcript=-220bp_to_ENST00000413503_5end | ||
|cluster_id=chr11:70963843..70963872,- | |||
|coexpression_cluster_id=C3198 | |||
|description=CAGE_peak_6_at_SHANK2_5end | |description=CAGE_peak_6_at_SHANK2_5end | ||
|id=chr11:70963843..70963872,- | |id=chr11:70963843..70963872,- | ||
|ontology_enrichment_celltype=CL:0000223!5.05e-12!59;CL:0002076!5.75e-10!43;CL:0000066!6.24e-10!254 | |ontology_enrichment_celltype=CL:0000223!5.05e-12!59;CL:0002076!5.75e-10!43;CL:0000066!6.24e-10!254 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,6.36e-09,58;CL:0000066,5.90e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;5.48e-11;30!UBERON:0003104;2.30e-07;31!UBERON:0009497;2.42e-07;13 | |||
|ontology_enrichment_disease=DOID:299!1.65e-08!25;DOID:305!3.61e-08!106 | |ontology_enrichment_disease=DOID:299!1.65e-08!25;DOID:305!3.61e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:5093;9.50e-12;4!DOID:1612;9.50e-12;4!DOID:7;9.46e-08;39!DOID:299;1.23e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.80e-12,4;DOID:1612,3.80e-12,4;DOID:305,2.33e-10,106;DOID:7,1.69e-09,39;DOID:0050687,1.86e-08,143;DOID:299,1.19e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.42e-23!169;UBERON:0000925!2.42e-23!169;UBERON:0006595!2.42e-23!169;UBERON:0001007!2.50e-20!155;UBERON:0001555!2.50e-20!155;UBERON:0007026!2.50e-20!155;UBERON:0004921!2.72e-15!129;UBERON:0004185!2.72e-15!129;UBERON:0005911!6.23e-14!82;UBERON:0000077!2.53e-13!130;UBERON:0000466!6.38e-13!126;UBERON:0003929!2.63e-12!54;UBERON:0000481!2.79e-12!347;UBERON:0005177!2.53e-11!107;UBERON:0009569!3.14e-11!113;UBERON:0003104!1.30e-10!238;UBERON:0009142!1.30e-10!238;UBERON:0002100!1.35e-10!216;UBERON:0000475!2.62e-09!365;UBERON:0005172!2.95e-09!55;UBERON:0005173!2.95e-09!55;UBERON:0009497!3.78e-09!25;UBERON:0000015!3.78e-09!25;UBERON:0002423!3.78e-09!25;UBERON:0006235!3.78e-09!25;UBERON:0004161!3.78e-09!25;UBERON:0009854!2.44e-08!23;UBERON:0005409!6.96e-08!35;UBERON:0001041!8.17e-08!98;UBERON:0008835!9.09e-08!22;UBERON:0003894!9.09e-08!22;UBERON:0002417!1.02e-07!61;UBERON:0000916!1.02e-07!61;UBERON:0006554!1.03e-07!44;UBERON:0009856!1.09e-07!26;UBERON:0000464!1.11e-07!104;UBERON:0000160!2.05e-07!27;UBERON:0002530!2.11e-07!59;UBERON:0001008!2.41e-07!45;UBERON:0000161!2.78e-07!35;UBERON:0007499!3.79e-07!25;UBERON:0000468!5.05e-07!659;UBERON:0002365!8.10e-07!31;UBERON:0002330!8.10e-07!31 | |||
|ontology_enrichment_uberon_v019=UBERON:0002365;1.64e-10;31!UBERON:0002330;1.64e-10;31!UBERON:0002423;1.10e-09;25!UBERON:0002107;2.29e-08;19!UBERON:0006925;2.29e-08;19!UBERON:0005172;6.06e-07;52!UBERON:0005173;6.06e-07;52!UBERON:0001829;6.37e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,4.94e-14,82;UBERON:0003929,6.51e-13,54;UBERON:0004119,7.72e-13,160;UBERON:0000925,7.72e-13,160;UBERON:0006595,7.72e-13,160;UBERON:0004921,1.11e-12,118;UBERON:0001007,9.19e-12,145;UBERON:0001555,9.19e-12,145;UBERON:0007026,9.19e-12,145;UBERON:0009569,2.26e-11,112;UBERON:0008835,2.59e-11,22;UBERON:0003894,2.59e-11,22;UBERON:0002530,2.65e-11,59;UBERON:0002365,5.78e-11,31;UBERON:0002330,5.78e-11,31;UBERON:0009854,9.93e-11,23;UBERON:0005177,7.22e-10,101;UBERON:0007499,1.05e-09,25;UBERON:0009497,1.05e-09,25;UBERON:0000015,1.05e-09,25;UBERON:0002423,1.05e-09,25;UBERON:0006235,1.05e-09,25;UBERON:0004161,1.05e-09,25;UBERON:0005172,1.68e-09,54;UBERON:0005173,1.68e-09,54;UBERON:0009856,2.99e-09,26;UBERON:0001041,3.18e-09,87;UBERON:0002100,1.82e-08,199;UBERON:0002107,2.04e-08,19;UBERON:0006925,2.04e-08,19;UBERON:0008836,2.04e-08,19;UBERON:0002417,3.49e-08,60;UBERON:0000916,3.49e-08,60;UBERON:0006554,3.34e-07,47;UBERON:0005153,4.26e-07,37;UBERON:0001008,5.38e-07,48 | |||
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| ||
|short_description=p6@SHANK2 | |short_description=p6@SHANK2 | ||
}} | }} |
Latest revision as of 23:36, 19 September 2015
Short description: | p6@SHANK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SHANK2_5end |
Coexpression cluster: | C3198_salivary_breast_submaxillary_Intestinal_Hepatocyte_Prostate_thyroid |
Association with transcript: | -220bp_to_ENST00000413503_5end |
EntrezGene: | SHANK2 |
HGNC: | 14295 |
UniProt: | C9JFP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 6.36e-09 | 58 |
epithelial cell | 5.90e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 4.94e-14 | 82 |
gut epithelium | 6.51e-13 | 54 |
endoderm-derived structure | 7.72e-13 | 160 |
endoderm | 7.72e-13 | 160 |
presumptive endoderm | 7.72e-13 | 160 |
subdivision of digestive tract | 1.11e-12 | 118 |
digestive system | 9.19e-12 | 145 |
digestive tract | 9.19e-12 | 145 |
primitive gut | 9.19e-12 | 145 |
subdivision of trunk | 2.26e-11 | 112 |
hepatic diverticulum | 2.59e-11 | 22 |
liver primordium | 2.59e-11 | 22 |
gland | 2.65e-11 | 59 |
exocrine gland | 5.78e-11 | 31 |
exocrine system | 5.78e-11 | 31 |
digestive tract diverticulum | 9.93e-11 | 23 |
trunk region element | 7.22e-10 | 101 |
epithelial sac | 1.05e-09 | 25 |
epithelium of foregut-midgut junction | 1.05e-09 | 25 |
anatomical boundary | 1.05e-09 | 25 |
hepatobiliary system | 1.05e-09 | 25 |
foregut-midgut junction | 1.05e-09 | 25 |
septum transversum | 1.05e-09 | 25 |
abdomen element | 1.68e-09 | 54 |
abdominal segment element | 1.68e-09 | 54 |
sac | 2.99e-09 | 26 |
foregut | 3.18e-09 | 87 |
trunk | 1.82e-08 | 199 |
liver | 2.04e-08 | 19 |
digestive gland | 2.04e-08 | 19 |
liver bud | 2.04e-08 | 19 |
abdominal segment of trunk | 3.49e-08 | 60 |
abdomen | 3.49e-08 | 60 |
urinary system structure | 3.34e-07 | 47 |
epithelial bud | 4.26e-07 | 37 |
renal system | 5.38e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.80e-12 | 4 |
breast cancer | 3.80e-12 | 4 |
carcinoma | 2.33e-10 | 106 |
disease of anatomical entity | 1.69e-09 | 39 |
cell type cancer | 1.86e-08 | 143 |
adenocarcinoma | 1.19e-07 | 25 |