FFCP PHASE1:Hg19::chr2:21233797..21233804,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=strong | |||
|UniProt=P04114 | |||
|association_with_transcript=126bp_to_X03326_5end | |||
|cluster_id=chr2:21233797..21233804,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_58_at_APOB_5end | |||
|id=chr2:21233797..21233804,- | |||
|ontology_enrichment_celltype=CL:0000181!1.42e-35!12;CL:0000417!1.42e-35!12;CL:0000668!1.42e-35!12;CL:0000414!1.42e-35!12;CL:0000412!1.42e-35!12;CL:0000182!1.42e-35!12;CL:0000223!5.26e-12!59;CL:0002253!4.98e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000182;7.58e-74;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.20e-74,12;CL:0000223,1.49e-15,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.50e-56;11!UBERON:0009497;2.38e-47;13!UBERON:0001041;8.83e-21;30!UBERON:0003104;4.59e-20;31!CL:0000223;2.06e-11;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!2.85e-39!19;UBERON:0006925!2.85e-39!19;UBERON:0008836!2.85e-39!19;UBERON:0005057!7.93e-36!26;UBERON:0008835!8.00e-34!22;UBERON:0003894!8.00e-34!22;UBERON:0009854!2.53e-32!23;UBERON:0007499!1.11e-29!25;UBERON:0009497!1.11e-29!25;UBERON:0000015!1.11e-29!25;UBERON:0002423!1.11e-29!25;UBERON:0006235!1.11e-29!25;UBERON:0004161!1.11e-29!25;UBERON:0009856!1.64e-28!26;UBERON:0002365!8.59e-24!31;UBERON:0002330!8.59e-24!31;UBERON:0002368!5.51e-21!35;UBERON:0003929!1.23e-20!54;UBERON:0005172!2.02e-16!55;UBERON:0005173!2.02e-16!55;UBERON:0000949!3.82e-16!45;UBERON:0004921!7.10e-16!129;UBERON:0004185!7.10e-16!129;UBERON:0002530!3.04e-15!59;UBERON:0002417!1.06e-14!61;UBERON:0000916!1.06e-14!61;UBERON:0005911!3.63e-13!82;UBERON:0002084!4.77e-13!1;UBERON:0002082!4.77e-13!1;UBERON:0004706!4.77e-13!1;UBERON:0001007!6.41e-13!155;UBERON:0001555!6.41e-13!155;UBERON:0007026!6.41e-13!155;UBERON:0004119!1.06e-11!169;UBERON:0000925!1.06e-11!169;UBERON:0006595!1.06e-11!169;UBERON:0000077!1.61e-09!130;UBERON:0001041!9.72e-09!98;UBERON:0005409!6.20e-08!35;UBERON:0005177!6.57e-08!107;UBERON:0009569!1.99e-07!113;UBERON:0000490!2.73e-07!138;UBERON:0002405!3.31e-07!115;UBERON:0003914!4.32e-07!118;UBERON:0000160!7.70e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.46e-82;19!UBERON:0006925;1.46e-82;19!UBERON:0002423;7.62e-63;25!UBERON:0002365;8.75e-49;31!UBERON:0002330;8.75e-49;31!UBERON:0002368;5.12e-43;33!UBERON:0000949;2.16e-31;43!UBERON:0005172;1.20e-18;52!UBERON:0005173;1.20e-18;52!UBERON:0002417;2.48e-16;58!UBERON:0000916;2.48e-16;58!UBERON:0002530;3.56e-16;57!UBERON:0001007;2.60e-11;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.46e-82,19;UBERON:0006925,1.46e-82,19;UBERON:0008836,1.46e-82,19;UBERON:0008835,2.32e-71,22;UBERON:0003894,2.32e-71,22;UBERON:0009854,2.82e-68,23;UBERON:0007499,7.62e-63,25;UBERON:0009497,7.62e-63,25;UBERON:0000015,7.62e-63,25;UBERON:0002423,7.62e-63,25;UBERON:0006235,7.62e-63,25;UBERON:0004161,7.62e-63,25;UBERON:0009856,1.93e-60,26;UBERON:0002365,9.50e-51,31;UBERON:0002330,9.50e-51,31;UBERON:0002368,5.52e-45,35;UBERON:0000949,4.77e-35,45;UBERON:0003929,3.04e-29,54;UBERON:0005172,3.04e-29,54;UBERON:0005173,3.04e-29,54;UBERON:0002530,8.82e-27,59;UBERON:0002417,2.45e-26,60;UBERON:0000916,2.45e-26,60;UBERON:0005911,2.63e-19,82;UBERON:0001041,3.34e-18,87;UBERON:0005177,1.09e-15,101;UBERON:0009569,3.77e-14,112;UBERON:0003914,1.52e-13,117;UBERON:0004921,2.56e-13,118;UBERON:0005256,5.44e-13,122;UBERON:0001007,7.53e-11,145;UBERON:0001555,7.53e-11,145;UBERON:0007026,7.53e-11,145;UBERON:0000490,1.06e-10,148;UBERON:0001048,6.80e-10,160;UBERON:0003104,6.80e-10,160;UBERON:0009142,6.80e-10,160;UBERON:0004119,7.84e-10,160;UBERON:0000925,7.84e-10,160;UBERON:0006595,7.84e-10,160;UBERON:0000025,3.49e-08,192;UBERON:0002100,6.23e-08,199;UBERON:0011216,6.23e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.60530208930985,1.96565443335525,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.28471228690949,1.97798060114799,1.81989568406299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.662091970365432,0,0,0,0,0,0,0,0,1.31897010310274,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385870790539723,0.874238242015829,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p58@APOB | |||
}} |
Latest revision as of 23:34, 19 September 2015
Short description: | p58@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_58_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 126bp_to_X03326_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.20e-74 | 12 |
endodermal cell | 1.49e-15 | 58 |