FFCP PHASE1:Hg19::chr2:21233317..21233330,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=24bp_to_M18471_5end | |association_with_transcript=24bp_to_M18471_5end | ||
|cluster_id=chr2:21233317..21233330,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_27_at_APOB_5end | |description=CAGE_peak_27_at_APOB_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000181!8.29e-39!12;CL:0000417!8.29e-39!12;CL:0000668!8.29e-39!12;CL:0000414!8.29e-39!12;CL:0000412!8.29e-39!12;CL:0000182!8.29e-39!12;CL:0000223!6.23e-12!59 | |ontology_enrichment_celltype=CL:0000181!8.29e-39!12;CL:0000417!8.29e-39!12;CL:0000668!8.29e-39!12;CL:0000414!8.29e-39!12;CL:0000412!8.29e-39!12;CL:0000182!8.29e-39!12;CL:0000223!6.23e-12!59 | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.24e-54;12 | |ontology_enrichment_celltype_v019=CL:0000182;5.24e-54;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.57e-54,12;CL:0000223,3.64e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;8.90e-41;11!UBERON:0009497;1.48e-34;13!UBERON:0001041;4.27e-15;30!UBERON:0003104;1.39e-14;31!CL:0000223;2.06e-08;58 | |ontology_enrichment_development_v019=UBERON:0004161;8.90e-41;11!UBERON:0009497;1.48e-34;13!UBERON:0001041;4.27e-15;30!UBERON:0003104;1.39e-14;31!CL:0000223;2.06e-08;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!5.61e-40!19;UBERON:0006925!5.61e-40!19;UBERON:0008836!5.61e-40!19;UBERON:0008835!2.24e-34!22;UBERON:0003894!2.24e-34!22;UBERON:0009854!7.81e-33!23;UBERON:0007499!4.06e-30!25;UBERON:0009497!4.06e-30!25;UBERON:0000015!4.06e-30!25;UBERON:0002423!4.06e-30!25;UBERON:0006235!4.06e-30!25;UBERON:0004161!4.06e-30!25;UBERON:0005057!6.47e-29!26;UBERON:0009856!6.47e-29!26;UBERON:0002365!4.57e-24!31;UBERON:0002330!4.57e-24!31;UBERON:0002368!3.51e-21!35;UBERON:0003929!8.28e-20!54;UBERON:0004921!2.74e-16!129;UBERON:0004185!2.74e-16!129;UBERON:0000949!3.30e-16!45;UBERON:0002530!7.28e-15!59;UBERON:0001007!3.80e-13!155;UBERON:0001555!3.80e-13!155;UBERON:0007026!3.80e-13!155;UBERON:0005172!4.88e-13!55;UBERON:0005173!4.88e-13!55;UBERON:0005911!1.79e-12!82;UBERON:0004119!7.52e-12!169;UBERON:0000925!7.52e-12!169;UBERON:0006595!7.52e-12!169;UBERON:0000160!9.89e-12!27;UBERON:0002417!1.24e-11!61;UBERON:0000916!1.24e-11!61;UBERON:0006122!8.22e-11!1;UBERON:0005409!4.97e-09!35;UBERON:0009569!4.52e-07!113;UBERON:0001041!9.13e-07!98 | |ontology_enrichment_uberon=UBERON:0002107!5.61e-40!19;UBERON:0006925!5.61e-40!19;UBERON:0008836!5.61e-40!19;UBERON:0008835!2.24e-34!22;UBERON:0003894!2.24e-34!22;UBERON:0009854!7.81e-33!23;UBERON:0007499!4.06e-30!25;UBERON:0009497!4.06e-30!25;UBERON:0000015!4.06e-30!25;UBERON:0002423!4.06e-30!25;UBERON:0006235!4.06e-30!25;UBERON:0004161!4.06e-30!25;UBERON:0005057!6.47e-29!26;UBERON:0009856!6.47e-29!26;UBERON:0002365!4.57e-24!31;UBERON:0002330!4.57e-24!31;UBERON:0002368!3.51e-21!35;UBERON:0003929!8.28e-20!54;UBERON:0004921!2.74e-16!129;UBERON:0004185!2.74e-16!129;UBERON:0000949!3.30e-16!45;UBERON:0002530!7.28e-15!59;UBERON:0001007!3.80e-13!155;UBERON:0001555!3.80e-13!155;UBERON:0007026!3.80e-13!155;UBERON:0005172!4.88e-13!55;UBERON:0005173!4.88e-13!55;UBERON:0005911!1.79e-12!82;UBERON:0004119!7.52e-12!169;UBERON:0000925!7.52e-12!169;UBERON:0006595!7.52e-12!169;UBERON:0000160!9.89e-12!27;UBERON:0002417!1.24e-11!61;UBERON:0000916!1.24e-11!61;UBERON:0006122!8.22e-11!1;UBERON:0005409!4.97e-09!35;UBERON:0009569!4.52e-07!113;UBERON:0001041!9.13e-07!98 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.55e-60;19!UBERON:0006925;3.55e-60;19!UBERON:0002423;1.07e-45;25!UBERON:0002365;2.10e-35;31!UBERON:0002330;2.10e-35;31!UBERON:0002368;3.08e-31;33!UBERON:0000949;7.91e-23;43!UBERON:0002108;2.70e-15;4!UBERON:0005172;1.26e-13;52!UBERON:0005173;1.26e-13;52!UBERON:0002417;5.99e-12;58!UBERON:0000916;5.99e-12;58!UBERON:0002530;7.89e-12;57!UBERON:0001007;2.78e-11;81 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.55e-60;19!UBERON:0006925;3.55e-60;19!UBERON:0002423;1.07e-45;25!UBERON:0002365;2.10e-35;31!UBERON:0002330;2.10e-35;31!UBERON:0002368;3.08e-31;33!UBERON:0000949;7.91e-23;43!UBERON:0002108;2.70e-15;4!UBERON:0005172;1.26e-13;52!UBERON:0005173;1.26e-13;52!UBERON:0002417;5.99e-12;58!UBERON:0000916;5.99e-12;58!UBERON:0002530;7.89e-12;57!UBERON:0001007;2.78e-11;81 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.55e-60,19;UBERON:0006925,3.55e-60,19;UBERON:0008836,3.55e-60,19;UBERON:0008835,5.95e-52,22;UBERON:0003894,5.95e-52,22;UBERON:0009854,1.10e-49,23;UBERON:0007499,1.07e-45,25;UBERON:0009497,1.07e-45,25;UBERON:0000015,1.07e-45,25;UBERON:0002423,1.07e-45,25;UBERON:0006235,1.07e-45,25;UBERON:0004161,1.07e-45,25;UBERON:0009856,6.20e-44,26;UBERON:0002365,8.16e-37,31;UBERON:0002330,8.16e-37,31;UBERON:0002368,1.40e-32,35;UBERON:0000949,2.81e-25,45;UBERON:0003929,5.21e-21,54;UBERON:0005172,5.21e-21,54;UBERON:0005173,5.21e-21,54;UBERON:0002530,3.37e-19,59;UBERON:0002417,7.15e-19,60;UBERON:0000916,7.15e-19,60;UBERON:0002108,2.70e-15,4;UBERON:0004921,1.45e-14,118;UBERON:0005911,1.07e-13,82;UBERON:0001041,6.96e-13,87;UBERON:0001007,9.46e-12,145;UBERON:0001555,9.46e-12,145;UBERON:0007026,9.46e-12,145;UBERON:0005177,4.96e-11,101;UBERON:0004119,1.37e-10,160;UBERON:0000925,1.37e-10,160;UBERON:0006595,1.37e-10,160;UBERON:0009569,6.75e-10,112;UBERON:0003914,1.88e-09,117;UBERON:0005256,4.84e-09,122;UBERON:0000490,2.37e-07,148;UBERON:0011216,2.76e-07,223;UBERON:0001048,9.36e-07,160;UBERON:0003104,9.36e-07,160;UBERON:0009142,9.36e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,10.8110993834539,8.86184860022106,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44257416306811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6786281984456,3.87354534391482,2.83094884187577,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,2.84127428655144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.0132552232746,10.8110993834539,8.86184860022106,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44257416306811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6786281984456,3.87354534391482,2.83094884187577,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3707013745959,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.00652811080656,2.84127428655144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p27@APOB | |short_description=p27@APOB | ||
}} | }} |
Latest revision as of 23:29, 19 September 2015
Short description: | p27@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_27_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 24bp_to_M18471_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.57e-54 | 12 |
endodermal cell | 3.64e-11 | 58 |