FFCP PHASE1:Hg19::chr2:21228641..21228648,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:21228641..21228648,- to FFCP PHASE1:Hg19::chr2:21228641..21228648,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=338 | |EntrezGene=338 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=603 | |HGNC=603 | ||
|TSSclassifier=strong | |||
|UniProt=P04114 | |UniProt=P04114 | ||
|association_with_transcript=-84bp_to_M12413_5end | |||
|cluster_id=chr2:21228641..21228648,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_40_at_APOB_5end | |||
|id=chr2:21228641..21228648,- | |||
|ontology_enrichment_celltype=CL:0000181!3.13e-45!12;CL:0000417!3.13e-45!12;CL:0000668!3.13e-45!12;CL:0000414!3.13e-45!12;CL:0000412!3.13e-45!12;CL:0000182!3.13e-45!12;CL:0000223!2.83e-11!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.63e-62;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.64e-62,12;CL:0000223,1.45e-12,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.49e-49;11!UBERON:0009497;6.16e-42;13!UBERON:0001041;3.93e-18;30!UBERON:0003104;1.34e-17;31!CL:0000223;1.32e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!8.56e-47!19;UBERON:0006925!8.56e-47!19;UBERON:0008836!8.56e-47!19;UBERON:0008835!2.75e-40!22;UBERON:0003894!2.75e-40!22;UBERON:0009854!1.71e-38!23;UBERON:0007499!2.44e-35!25;UBERON:0009497!2.44e-35!25;UBERON:0000015!2.44e-35!25;UBERON:0002423!2.44e-35!25;UBERON:0006235!2.44e-35!25;UBERON:0004161!2.44e-35!25;UBERON:0005057!6.09e-34!26;UBERON:0009856!6.09e-34!26;UBERON:0002365!2.62e-28!31;UBERON:0002330!2.62e-28!31;UBERON:0002368!5.88e-25!35;UBERON:0003929!1.87e-19!54;UBERON:0000949!3.54e-19!45;UBERON:0005172!1.71e-15!55;UBERON:0005173!1.71e-15!55;UBERON:0002530!2.28e-14!59;UBERON:0002417!7.34e-14!61;UBERON:0000916!7.34e-14!61;UBERON:0004921!1.13e-12!129;UBERON:0004185!1.13e-12!129;UBERON:0005911!2.31e-12!82;UBERON:0001007!3.02e-10!155;UBERON:0001555!3.02e-10!155;UBERON:0007026!3.02e-10!155;UBERON:0004119!3.03e-09!169;UBERON:0000925!3.03e-09!169;UBERON:0006595!3.03e-09!169;UBERON:0001041!3.41e-08!98;UBERON:0005177!2.09e-07!107;UBERON:0009569!5.98e-07!113;UBERON:0000490!8.68e-07!138;UBERON:0002405!9.70e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.97e-64;19!UBERON:0006925;1.97e-64;19!UBERON:0002423;7.48e-49;25!UBERON:0002365;4.44e-38;31!UBERON:0002330;4.44e-38;31!UBERON:0002368;2.11e-33;33!UBERON:0000949;6.77e-24;43!UBERON:0005172;1.40e-14;52!UBERON:0005173;1.40e-14;52!UBERON:0002417;1.64e-13;58!UBERON:0000916;1.64e-13;58!UBERON:0002108;5.27e-13;4!UBERON:0002530;6.81e-12;57!UBERON:0001007;8.75e-11;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.97e-64,19;UBERON:0006925,1.97e-64,19;UBERON:0008836,1.97e-64,19;UBERON:0008835,1.39e-55,22;UBERON:0003894,1.39e-55,22;UBERON:0009854,3.82e-53,23;UBERON:0007499,7.48e-49,25;UBERON:0009497,7.48e-49,25;UBERON:0000015,7.48e-49,25;UBERON:0002423,7.48e-49,25;UBERON:0006235,7.48e-49,25;UBERON:0004161,7.48e-49,25;UBERON:0009856,5.93e-47,26;UBERON:0002365,2.71e-39,31;UBERON:0002330,2.71e-39,31;UBERON:0002368,9.77e-35,35;UBERON:0000949,7.02e-27,45;UBERON:0003929,2.74e-22,54;UBERON:0005172,2.74e-22,54;UBERON:0005173,2.74e-22,54;UBERON:0002530,2.43e-20,59;UBERON:0002417,5.44e-20,60;UBERON:0000916,5.44e-20,60;UBERON:0004921,1.40e-14,118;UBERON:0005911,1.99e-14,82;UBERON:0001041,1.49e-13,87;UBERON:0002108,5.27e-13,4;UBERON:0001007,1.08e-11,145;UBERON:0001555,1.08e-11,145;UBERON:0007026,1.08e-11,145;UBERON:0005177,1.46e-11,101;UBERON:0004119,1.68e-10,160;UBERON:0000925,1.68e-10,160;UBERON:0006595,1.68e-10,160;UBERON:0009569,2.41e-10,112;UBERON:0003914,7.27e-10,117;UBERON:0005256,2.00e-09,122;UBERON:0011216,1.31e-08,223;UBERON:0000490,1.30e-07,148;UBERON:0000025,5.29e-07,192;UBERON:0001048,5.68e-07,160;UBERON:0003104,5.68e-07,160;UBERON:0009142,5.68e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,6.87979051674338,4.13552934676983,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,2.52106183383116,2.88455504334083,2.08950985947973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51725360827398,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08043821351123,1.74847648403166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2106041786197,6.87979051674338,4.13552934676983,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721287081534056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.353830258013357,0,0,0,0,0,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,2.52106183383116,2.88455504334083,2.08950985947973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51725360827398,3.97520666736664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08043821351123,1.74847648403166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p40@APOB | |||
}} | }} |
Latest revision as of 22:57, 19 September 2015
Short description: | p40@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_40_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -84bp_to_M12413_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | P04114 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.64e-62 | 12 |
endodermal cell | 1.45e-12 | 58 |