FFCP PHASE1:Hg19::chr22:33256862..33256869,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:33256862..33256869,+ to FFCP PHASE1:Hg19::chr22:33256862..33256869,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7078 | |EntrezGene=7078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11822 | |HGNC=11822 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-123bp_to_AK098517_5end | |||
|cluster_id=chr22:33256862..33256869,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_20_at_TIMP3_5end | |||
|id=chr22:33256862..33256869,+ | |||
|ontology_enrichment_celltype=CL:0000057!1.71e-09!75;CL:0002334!6.69e-09!12;CL:0000055!7.92e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.20e-13;3!CL:0002334;2.22e-11;12!CL:0000349;1.13e-09;19!CL:0002593;2.97e-09;2!CL:0000134;4.33e-09;55!CL:0002363;5.45e-09;2!CL:0000723;8.05e-09;61!CL:0002595;5.18e-08;5!CL:0002537;9.13e-08;5!CL:0000048;2.73e-07;58!CL:0000034;3.93e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.55e-13,3;CL:0002334,2.97e-11,12;CL:0000349,1.13e-09,19;CL:0002593,2.14e-09,2;CL:0002363,6.96e-09,2;CL:0000008,6.96e-09,2;CL:0002595,4.40e-08,5;CL:0002537,9.16e-08,5;CL:0000057,6.53e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000008;5.45e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;8.41e-10;14!DOID:17;1.18e-07;5!DOID:450;1.18e-07;5!DOID:66;1.18e-07;5!DOID:423;1.18e-07;5!DOID:0080000;1.18e-07;5!DOID:11722;1.18e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.43e-10,14;DOID:17,1.71e-07,5;DOID:450,1.71e-07,5;DOID:66,1.71e-07,5;DOID:423,1.71e-07,5;DOID:0080000,1.71e-07,5;DOID:11722,1.71e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.03e-10!14;UBERON:0000158!6.03e-10!14;UBERON:0004923!1.05e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.84e-14;10!UBERON:0000158;1.84e-14;10!UBERON:0003124;1.20e-13;3!UBERON:0000920;1.20e-13;3!UBERON:0000478;3.60e-12;24!UBERON:0003688;7.03e-11;6!UBERON:0002358;7.03e-11;6!UBERON:0003684;7.03e-11;6!UBERON:0001178;7.03e-11;6!UBERON:0002456;2.97e-09;2!UBERON:0003566;5.45e-09;2!UBERON:0001777;5.45e-09;2!UBERON:0003834;5.18e-08;5!UBERON:0001533;5.18e-08;5!UBERON:0004457;2.88e-07;9!UBERON:0000042;2.88e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.10e-17,14;UBERON:0000158,2.10e-17,14;UBERON:0003124,1.33e-14,7;UBERON:0000920,1.55e-13,3;UBERON:0000478,3.57e-12,24;UBERON:0003688,1.07e-10,6;UBERON:0002358,1.07e-10,6;UBERON:0003684,1.07e-10,6;UBERON:0001178,1.07e-10,6;UBERON:0002456,2.14e-09,2;UBERON:0003566,6.96e-09,2;UBERON:0001777,6.96e-09,2;UBERON:0004923,8.01e-09,66;UBERON:0003834,4.40e-08,5;UBERON:0001533,4.40e-08,5 | |||
|phase1_expression=0.363356758541113,0.856402095563933,1.26858963686374,2.00146596706261,0.446961094427288,0,0,0,0,0,0,0.873765488520689,0.527533956456907,0,0,0,0.602694528023977,0,0.487932798790507,0.123121058076788,0,0,0,0,0.376627918784408,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289693037921647,0,1.94653948121054,0.0945348171640679,0,0.087834785693126,0.130979075497713,0.364295288292542,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0.732186172644509,0,0,0,0,0.112611480483322,0,0,0,0,0,0,2.48485975847659,0.633152558322899,0,0.573673241497627,0.709336764396714,0.560677600142307,0,0.74000264525148,0,0.134710672069688,0.163461903113459,0,0,0.234321431833797,0,0,0,0,0,0,0.408308342509787,0,0.103325781175765,0,0.741800787835671,0,0,0,0,0,0,0,0.150238058906597,0,1.07633781413317,0,1.05965950579781,2.10063767259082,0.309157587715317,0.257640540045629,0.744467425326359,0.843881661206331,0,1.00973509697646,0.552299391853796,0.484938170456436,0.355009592516614,0.201504196455281,0.508681776931463,0.193260853163297,0,0,0,0,0,0,0,0,0,0,4.14404764057442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93227474779292,1.03993478527958,0,0,0,0,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0.268675568108545,0.581267877027924,0,0,0.176096868026452,0,0.144119953416961,0,0,0.381988425558278,0,0,0.616964956219941,0.600686115687835,0,0.224262168690721,0,0.2933531432838,0.646358578788889,0,0,0,1.04007436911366,0,0,0.266422179016099,0.285955987316295,0,0,0,0.355391948742546,0,0,0.871533458600294,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,0,0.356857977594324,0.157702415033935,0,0,4.5481500811197,0,0.664225598535437,0,0.60818530127658,0.587403472388222,0.343143423810856,0,0,0,0,1.66435439510497,0.907170879989041,0.248107807818777,1.07423381301644,0.841980283299221,0.384417447767103,1.02341449813341,2.57366273829772,4.45254199334973,0.462629081407967,1.24293207719189,0.410635780069046,0,1.51073491997947,0.241718899183244,0,0.184161977871793,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0,1.54227252690289,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.309123034943167,0,0,0,0,0,0.193341436584244,0.308097234229289,0,0.275673144969061,0,0,0.0852266274161009,0.267096106940212,0,0,0.127612712494584,0.10115778085555,0.464845549297286,3.46293581513704,0,0,0,0.869932992075073,0,0,0,0,0.38126038784765,0.255897791311334,3.85145089230528,0.318203247925937,0,0.359744915166629,0,0,0.404364963146632,0,0,0,1.70599442741899,5.28250733783777,0,0,0,2.2054613741845,0.66343897524122,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0.286822704408103,0.0982490410131212,0,0,0.844430541190656,0.658589785919804,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0,0,1.67121139316383,0.593929361665277,4.60741053148848,0,0,0,0,0.422250816255987,0,0.276283915531148,0,0.306806047506464,0,4.3545542272653,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0.472775363535873,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0.139423744278603,0.384751292518985,0,0,0,0,4.14701507651495,2.01514705484097,15.991043280559,0,0,0.166211681900156,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0.135904206073614,0,0.305994652908965,0.288950589901519,0,0,0,0.429765441419957,0,1.95497680890578,0,0,0,0.429226048136571,0.669514372325618,0.0671834724867263,1.08089965062721,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0.335434687599266,0.315222829196793,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0.082092520749339,0,0.453248366080503,0,0,0.258565912723101,0.26446520348538,0,0,0.747511887973863,0,0,0.496166021811951,0,0,0,1.08803560673895,0.2506898940227,0.612691153526923,0.327872630709804,0,0,0,0,0,0.221858103073705,0,0.138348634936231,0,0.151649117541648,0.570930667089935,1.88212655758537,0,0,0.447764408660622,0,1.10961172300523,0.378806010550178,0.251567901752575,0,0.457680136793847,0.302461847526478,0.466311601748341,0.443565449968902,0,0,0.155262956876259,0.829412415681711,1.86089200190596,1.04349012362347,1.35231848097497,4.56966254602554,2.03435366602331,0,0,0,2.78667122089031,0,1.03018711554838,0.673498977531838,0,0,0.214441591374926,0,0,0,0,0,0.308801447160972,0,0.353378291891762,0.192914038270915,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0.109209638192014,0,0.212574920101683,0.123935764259002,0,0.318004350653419,0,0,1.76337971845342,0.6124909547064,0,0,0,0,0,0,0.1614756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| ||
|short_description=p20@TIMP3 | |||
}} | }} |
Latest revision as of 22:54, 19 September 2015
Short description: | p20@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_TIMP3_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | -123bp_to_AK098517_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.55e-13 | 3 |
preadipocyte | 2.97e-11 | 12 |
extraembryonic cell | 1.13e-09 | 19 |
smooth muscle cell of the internal thoracic artery | 2.14e-09 | 2 |
keratocyte | 6.96e-09 | 2 |
migratory cranial neural crest cell | 6.96e-09 | 2 |
smooth muscle cell of the subclavian artery | 4.40e-08 | 5 |
amnion mesenchymal stem cell | 9.16e-08 | 5 |
fibroblast | 6.53e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.10e-17 | 14 |
membranous layer | 2.10e-17 | 14 |
chorion | 1.33e-14 | 7 |
egg chorion | 1.55e-13 | 3 |
extraembryonic structure | 3.57e-12 | 24 |
omentum | 1.07e-10 | 6 |
peritoneum | 1.07e-10 | 6 |
abdominal cavity | 1.07e-10 | 6 |
visceral peritoneum | 1.07e-10 | 6 |
internal thoracic artery | 2.14e-09 | 2 |
head connective tissue | 6.96e-09 | 2 |
substantia propria of cornea | 6.96e-09 | 2 |
organ component layer | 8.01e-09 | 66 |
thoracic segment blood vessel | 4.40e-08 | 5 |
subclavian artery | 4.40e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.43e-10 | 14 |
musculoskeletal system disease | 1.71e-07 | 5 |
myotonic disease | 1.71e-07 | 5 |
muscle tissue disease | 1.71e-07 | 5 |
myopathy | 1.71e-07 | 5 |
muscular disease | 1.71e-07 | 5 |
myotonic dystrophy | 1.71e-07 | 5 |