FFCP PHASE1:Hg19::chr17:37856253..37856296,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:37856253..37856296,+
|short_description=p2@ERBB2
|description=CAGE_peak_2_at_ERBB2_5end
|association_with_transcript=0bp_to_ENST00000269571,ENST0000054014...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2064 | |EntrezGene=2064 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3430 | |HGNC=3430 | ||
|TSSclassifier=strong | |||
|UniProt=P04626 | |UniProt=P04626 | ||
|association_with_transcript=0bp_to_ENST00000269571,ENST00000540147,NM_004448,uc002hsn.1,uc002hso.2,uc002hsp.2,uc010cwb.2,uc010wek.1_5end | |||
|cluster_id=chr17:37856253..37856296,+ | |||
|description=CAGE_peak_2_at_ERBB2_5end | |||
|id=chr17:37856253..37856296,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.48e-13!180;CL:0000066!1.78e-12!254;CL:0002321!1.15e-11!248;CL:0000220!4.11e-11!246 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.02e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.40e-12,253;CL:0002321,2.48e-11,250;CL:0000349,9.14e-08,19;CL:0000057,5.89e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!2.24e-17!347;UBERON:0000468!2.59e-17!659;UBERON:0000475!7.15e-17!365;UBERON:0002100!2.24e-14!216;UBERON:0003104!7.34e-14!238;UBERON:0009142!7.34e-14!238;UBERON:0004119!5.95e-13!169;UBERON:0000925!5.95e-13!169;UBERON:0006595!5.95e-13!169;UBERON:0000467!1.22e-11!625;UBERON:0000480!2.26e-11!626;UBERON:0000062!9.98e-11!511;UBERON:0000466!2.01e-10!126;UBERON:0009569!2.97e-10!113;UBERON:0005256!3.14e-10!143;UBERON:0003103!3.45e-10!69;UBERON:0000464!9.06e-10!104;UBERON:0000922!1.01e-09!612;UBERON:0001007!1.13e-09!155;UBERON:0001555!1.13e-09!155;UBERON:0007026!1.13e-09!155;UBERON:0001008!6.97e-09!45;UBERON:0005177!1.25e-08!107;UBERON:0006554!1.72e-08!44;UBERON:0003102!2.09e-08!95;UBERON:0005631!3.19e-08!14;UBERON:0000158!3.19e-08!14;UBERON:0004923!3.36e-08!57;UBERON:0002050!3.52e-08!605;UBERON:0005423!3.52e-08!605;UBERON:0000119!5.46e-08!312;UBERON:0000923!5.74e-08!604;UBERON:0005291!5.74e-08!604;UBERON:0006598!5.74e-08!604;UBERON:0002532!5.74e-08!604;UBERON:0000064!5.94e-08!219;UBERON:0000483!7.83e-08!309;UBERON:0001444!1.01e-07!48;UBERON:0001048!1.35e-07!168;UBERON:0000077!3.16e-07!130;UBERON:0002553!3.78e-07!70;UBERON:0003914!5.35e-07!118;UBERON:0003064!7.63e-07!37;UBERON:0000058!8.59e-07!26;UBERON:0002417!9.07e-07!61;UBERON:0000916!9.07e-07!61;UBERON:0005156!9.50e-07!59;UBERON:0000990!9.50e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.21e-07;30!UBERON:0001008;1.21e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.88e-13,160;UBERON:0000925,1.88e-13,160;UBERON:0006595,1.88e-13,160;UBERON:0002100,2.15e-13,199;UBERON:0003104,8.87e-13,160;UBERON:0009142,8.87e-13,160;UBERON:0001008,9.68e-11,48;UBERON:0006554,2.50e-10,47;UBERON:0009569,3.78e-10,112;UBERON:0003103,4.84e-10,68;UBERON:0001007,6.93e-10,145;UBERON:0001555,6.93e-10,145;UBERON:0007026,6.93e-10,145;UBERON:0003102,1.14e-08,99;UBERON:0004923,1.95e-08,66;UBERON:0005177,1.99e-08,101;UBERON:0005631,2.89e-08,14;UBERON:0000158,2.89e-08,14;UBERON:0000119,6.79e-08,309;UBERON:0000922,7.22e-08,592;UBERON:0000483,9.72e-08,306;UBERON:0001048,1.10e-07,160;UBERON:0001444,1.78e-07,49;UBERON:0005256,2.90e-07,122;UBERON:0000033,5.20e-07,56;UBERON:0003914,6.74e-07,117;UBERON:0005156,8.47e-07,59;UBERON:0000990,8.47e-07,59 | |||
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| ||
|short_description=p2@ERBB2 | |||
}} | }} |
Latest revision as of 22:34, 19 September 2015
Short description: | p2@ERBB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ERBB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000269571, ENST00000540147, NM_004448, uc002hsn.1, uc002hso.2, uc002hsp.2, uc010cwb.2, uc010wek.1_5end |
EntrezGene: | ERBB2 |
HGNC: | 3430 |
UniProt: | P04626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.40e-12 | 253 |
embryonic cell | 2.48e-11 | 250 |
extraembryonic cell | 9.14e-08 | 19 |
fibroblast | 5.89e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.88e-13 | 160 |
endoderm | 1.88e-13 | 160 |
presumptive endoderm | 1.88e-13 | 160 |
trunk | 2.15e-13 | 199 |
mesenchyme | 8.87e-13 | 160 |
entire embryonic mesenchyme | 8.87e-13 | 160 |
renal system | 9.68e-11 | 48 |
urinary system structure | 2.50e-10 | 47 |
subdivision of trunk | 3.78e-10 | 112 |
compound organ | 4.84e-10 | 68 |
digestive system | 6.93e-10 | 145 |
digestive tract | 6.93e-10 | 145 |
primitive gut | 6.93e-10 | 145 |
surface structure | 1.14e-08 | 99 |
organ component layer | 1.95e-08 | 66 |
trunk region element | 1.99e-08 | 101 |
extraembryonic membrane | 2.89e-08 | 14 |
membranous layer | 2.89e-08 | 14 |
cell layer | 6.79e-08 | 309 |
embryo | 7.22e-08 | 592 |
epithelium | 9.72e-08 | 306 |
primordium | 1.10e-07 | 160 |
subdivision of head | 1.78e-07 | 49 |
trunk mesenchyme | 2.90e-07 | 122 |
head | 5.20e-07 | 56 |
epithelial tube | 6.74e-07 | 117 |
reproductive structure | 8.47e-07 | 59 |
reproductive system | 8.47e-07 | 59 |