FFCP PHASE1:Hg19::chr22:31536480..31536499,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50487 | |EntrezGene=50487 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17934 | |HGNC=17934 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NZ20 | |UniProt=Q9NZ20 | ||
|association_with_transcript=-11bp_to_NM_015715,uc003aka.2_5end | |association_with_transcript=-11bp_to_NM_015715,uc003aka.2_5end | ||
|cluster_id=chr22:31536480..31536499,- | |||
|description=CAGE_peak_3_at_PLA2G3_5end | |description=CAGE_peak_3_at_PLA2G3_5end | ||
|id=chr22:31536480..31536499,- | |id=chr22:31536480..31536499,- | ||
|ontology_enrichment_celltype=CL:0002322!7.95e-10!5;CL:0000064!6.96e-07!3;CL:0005012!6.96e-07!3;CL:0000067!6.96e-07!3;CL:0002304!6.96e-07!3 | |ontology_enrichment_celltype=CL:0002322!7.95e-10!5;CL:0000064!6.96e-07!3;CL:0005012!6.96e-07!3;CL:0000067!6.96e-07!3;CL:0002304!6.96e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;6.07e-19;5!CL:0000064;3.67e-18;3!CL:0000067;3.67e-18;3!CL:0005012;3.67e-18;3!CL:0002304;3.67e-18;3!CL:0002575;1.65e-13;2!CL:0002321;1.40e-09;15!CL:0002586;5.07e-09;3!CL:0002605;9.37e-09;3!CL:0000075;2.26e-07;27!CL:0000669;3.62e-07;4!CL:0000710;3.98e-07;20!CL:0000149;5.76e-07;4!CL:0000147;5.87e-07;14 | |ontology_enrichment_celltype_v019=CL:0002322;6.07e-19;5!CL:0000064;3.67e-18;3!CL:0000067;3.67e-18;3!CL:0005012;3.67e-18;3!CL:0002304;3.67e-18;3!CL:0002575;1.65e-13;2!CL:0002321;1.40e-09;15!CL:0002586;5.07e-09;3!CL:0002605;9.37e-09;3!CL:0000075;2.26e-07;27!CL:0000669;3.62e-07;4!CL:0000710;3.98e-07;20!CL:0000149;5.76e-07;4!CL:0000147;5.87e-07;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.12e-19,5;CL:0000064,6.34e-19,3;CL:0000067,6.34e-19,3;CL:0005012,6.34e-19,3;CL:0002304,6.34e-19,3;CL:0002575,1.56e-13,2;CL:0002586,4.42e-09,3;CL:0002605,1.44e-08,3;CL:0000133,6.19e-08,59;CL:0000075,1.78e-07,27;CL:0000710,3.02e-07,20;CL:0000669,3.52e-07,4;CL:0000149,5.20e-07,4;CL:0000147,6.43e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.09e-07;1 | |ontology_enrichment_development_v019=UBERON:0009143;1.09e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000063!2.09e-11!97;UBERON:0007625!2.34e-10!11;UBERON:0000019!1.06e-09!19;UBERON:0000047!1.06e-09!19;UBERON:0004088!1.06e-09!19;UBERON:0003072!1.06e-09!19;UBERON:0003071!1.06e-09!19;UBERON:0004128!1.06e-09!19;UBERON:0002200!1.77e-09!11;UBERON:0006876!1.77e-09!11;UBERON:0000924!2.18e-09!173;UBERON:0006601!2.18e-09!173;UBERON:0000020!4.11e-09!23;UBERON:0000970!4.48e-09!20;UBERON:0000153!7.53e-09!129;UBERON:0007811!7.53e-09!129;UBERON:0005178!7.75e-09!34;UBERON:0002224!7.75e-09!34;UBERON:0001032!1.33e-08!24;UBERON:0004456!1.33e-08!24;UBERON:0002104!1.65e-08!21;UBERON:0001456!1.65e-08!21;UBERON:0005181!1.81e-08!35;UBERON:0001444!2.20e-08!48;UBERON:0000488!2.43e-08!4;UBERON:0002203!3.65e-08!6;UBERON:0001768!3.65e-08!6;UBERON:0004121!6.45e-08!169;UBERON:0002346!1.38e-07!90;UBERON:0001801!1.60e-07!14;UBERON:0000475!2.60e-07!365;UBERON:0000033!2.61e-07!123;UBERON:0000481!2.77e-07!347;UBERON:0000064!6.95e-07!219;UBERON:0001778!6.96e-07!3;UBERON:0001775!6.96e-07!3 | |ontology_enrichment_uberon=UBERON:0000063!2.09e-11!97;UBERON:0007625!2.34e-10!11;UBERON:0000019!1.06e-09!19;UBERON:0000047!1.06e-09!19;UBERON:0004088!1.06e-09!19;UBERON:0003072!1.06e-09!19;UBERON:0003071!1.06e-09!19;UBERON:0004128!1.06e-09!19;UBERON:0002200!1.77e-09!11;UBERON:0006876!1.77e-09!11;UBERON:0000924!2.18e-09!173;UBERON:0006601!2.18e-09!173;UBERON:0000020!4.11e-09!23;UBERON:0000970!4.48e-09!20;UBERON:0000153!7.53e-09!129;UBERON:0007811!7.53e-09!129;UBERON:0005178!7.75e-09!34;UBERON:0002224!7.75e-09!34;UBERON:0001032!1.33e-08!24;UBERON:0004456!1.33e-08!24;UBERON:0002104!1.65e-08!21;UBERON:0001456!1.65e-08!21;UBERON:0005181!1.81e-08!35;UBERON:0001444!2.20e-08!48;UBERON:0000488!2.43e-08!4;UBERON:0002203!3.65e-08!6;UBERON:0001768!3.65e-08!6;UBERON:0004121!6.45e-08!169;UBERON:0002346!1.38e-07!90;UBERON:0001801!1.60e-07!14;UBERON:0000475!2.60e-07!365;UBERON:0000033!2.61e-07!123;UBERON:0000481!2.77e-07!347;UBERON:0000064!6.95e-07!219;UBERON:0001778!6.96e-07!3;UBERON:0001775!6.96e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.17e-19;11!UBERON:0001778;3.67e-18;3!UBERON:0001775;3.67e-18;3!UBERON:0002203;8.03e-16;6!UBERON:0001768;8.03e-16;6!UBERON:0002200;8.03e-16;6!UBERON:0000020;2.20e-15;23!UBERON:0001032;1.08e-14;24!UBERON:0004456;1.08e-14;24!UBERON:0000019;1.52e-14;19!UBERON:0000047;1.52e-14;19!UBERON:0004088;1.52e-14;19!UBERON:0010230;1.52e-14;19!UBERON:0000970;8.96e-14;20!UBERON:0000488;9.17e-14;4!UBERON:0002104;4.46e-13;21!UBERON:0001456;4.46e-13;21!UBERON:0002050;2.36e-11;5!UBERON:0005423;2.36e-11;5!UBERON:0001801;1.90e-10;14!UBERON:0001781;5.07e-09;3!UBERON:0001782;5.07e-09;3!UBERON:0006876;1.07e-08;11!UBERON:0010371;3.33e-08;31!UBERON:0005795;3.50e-07;1!UBERON:0007029;3.50e-07;1!UBERON:0002346;5.76e-07;4!UBERON:0000923;5.76e-07;4!UBERON:0010316;5.76e-07;4!UBERON:0005291;5.76e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0007625;4.17e-19;11!UBERON:0001778;3.67e-18;3!UBERON:0001775;3.67e-18;3!UBERON:0002203;8.03e-16;6!UBERON:0001768;8.03e-16;6!UBERON:0002200;8.03e-16;6!UBERON:0000020;2.20e-15;23!UBERON:0001032;1.08e-14;24!UBERON:0004456;1.08e-14;24!UBERON:0000019;1.52e-14;19!UBERON:0000047;1.52e-14;19!UBERON:0004088;1.52e-14;19!UBERON:0010230;1.52e-14;19!UBERON:0000970;8.96e-14;20!UBERON:0000488;9.17e-14;4!UBERON:0002104;4.46e-13;21!UBERON:0001456;4.46e-13;21!UBERON:0002050;2.36e-11;5!UBERON:0005423;2.36e-11;5!UBERON:0001801;1.90e-10;14!UBERON:0001781;5.07e-09;3!UBERON:0001782;5.07e-09;3!UBERON:0006876;1.07e-08;11!UBERON:0010371;3.33e-08;31!UBERON:0005795;3.50e-07;1!UBERON:0007029;3.50e-07;1!UBERON:0002346;5.76e-07;4!UBERON:0000923;5.76e-07;4!UBERON:0010316;5.76e-07;4!UBERON:0005291;5.76e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.48e-19,11;UBERON:0001778,6.34e-19,3;UBERON:0001775,6.34e-19,3;UBERON:0002203,3.70e-16,6;UBERON:0001768,3.70e-16,6;UBERON:0002200,3.70e-16,6;UBERON:0000020,8.10e-15,24;UBERON:0001032,8.10e-15,24;UBERON:0004456,8.10e-15,24;UBERON:0000488,2.48e-14,4;UBERON:0000019,5.70e-14,20;UBERON:0000047,5.70e-14,20;UBERON:0010312,5.70e-14,20;UBERON:0004088,5.70e-14,20;UBERON:0010230,5.70e-14,20;UBERON:0003072,5.70e-14,20;UBERON:0004128,5.70e-14,20;UBERON:0003071,5.70e-14,20;UBERON:0000970,2.91e-13,21;UBERON:0002104,2.91e-13,21;UBERON:0001456,1.28e-12,22;UBERON:0001801,1.28e-10,14;UBERON:0001782,4.42e-09,3;UBERON:0005424,4.42e-09,3;UBERON:0006876,7.14e-09,11;UBERON:0005085,1.07e-08,31;UBERON:0001444,2.27e-08,49;UBERON:0007029,2.84e-07,1;UBERON:0000033,3.83e-07,56;UBERON:0001781,5.20e-07,4 | |||
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| ||
|short_description=p3@PLA2G3 | |short_description=p3@PLA2G3 | ||
}} | }} |
Latest revision as of 19:42, 19 September 2015
Short description: | p3@PLA2G3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLA2G3_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_NM_015715, uc003aka.2_5end |
EntrezGene: | PLA2G3 |
HGNC: | 17934 |
UniProt: | Q9NZ20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.12e-19 | 5 |
ciliated cell | 6.34e-19 | 3 |
ciliated epithelial cell | 6.34e-19 | 3 |
multi-ciliated epithelial cell | 6.34e-19 | 3 |
non-pigmented ciliary epithelial cell | 6.34e-19 | 3 |
central nervous system pericyte | 1.56e-13 | 2 |
retinal pigment epithelial cell | 4.42e-09 | 3 |
astrocyte of the cerebral cortex | 1.44e-08 | 3 |
neurectodermal cell | 6.19e-08 | 59 |
columnar/cuboidal epithelial cell | 1.78e-07 | 27 |
neurecto-epithelial cell | 3.02e-07 | 20 |
pericyte cell | 3.52e-07 | 4 |
visual pigment cell | 5.20e-07 | 4 |
pigment cell | 6.43e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 1.48e-19 | 11 |
ciliary epithelium | 6.34e-19 | 3 |
ciliary body | 6.34e-19 | 3 |
vasculature of eye | 3.70e-16 | 6 |
uvea | 3.70e-16 | 6 |
vasculature of head | 3.70e-16 | 6 |
sense organ | 8.10e-15 | 24 |
sensory system | 8.10e-15 | 24 |
entire sense organ system | 8.10e-15 | 24 |
atypical epithelium | 2.48e-14 | 4 |
camera-type eye | 5.70e-14 | 20 |
simple eye | 5.70e-14 | 20 |
immature eye | 5.70e-14 | 20 |
ocular region | 5.70e-14 | 20 |
eyeball of camera-type eye | 5.70e-14 | 20 |
optic cup | 5.70e-14 | 20 |
optic vesicle | 5.70e-14 | 20 |
eye primordium | 5.70e-14 | 20 |
eye | 2.91e-13 | 21 |
visual system | 2.91e-13 | 21 |
face | 1.28e-12 | 22 |
anterior segment of eyeball | 1.28e-10 | 14 |
pigmented layer of retina | 4.42e-09 | 3 |
presumptive retinal pigmented epithelium | 4.42e-09 | 3 |
vasculature of organ | 7.14e-09 | 11 |
ectodermal placode | 1.07e-08 | 31 |
subdivision of head | 2.27e-08 | 49 |
surface | 2.84e-07 | 1 |
head | 3.83e-07 | 56 |
layer of retina | 5.20e-07 | 4 |