FFCP PHASE1:Hg19::chr2:204801448..204801459,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29851 | |EntrezGene=29851 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5351 | |HGNC=5351 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y6W8,Q53QY6 | |UniProt=Q9Y6W8,Q53QY6 | ||
|association_with_transcript=-11bp_to_ENST00000316386,NM_012092,uc002vam.2,uc010fua.2,uc010zip.1_5end | |association_with_transcript=-11bp_to_ENST00000316386,NM_012092,uc002vam.2,uc010fua.2,uc010zip.1_5end | ||
|cluster_id=chr2:204801448..204801459,+ | |||
|coexpression_cluster_id=C23 | |||
|description=CAGE_peak_3_at_ICOS_5end | |description=CAGE_peak_3_at_ICOS_5end | ||
|id=chr2:204801448..204801459,+ | |id=chr2:204801448..204801459,+ | ||
|ontology_enrichment_celltype=CL:0000791!8.21e-35!18;CL:0000789!8.21e-35!18;CL:0002420!8.21e-35!18;CL:0002419!8.21e-35!18;CL:0000790!8.21e-35!18;CL:0000084!6.93e-33!25;CL:0000827!6.93e-33!25;CL:0000838!2.77e-26!52;CL:0000542!1.29e-25!53;CL:0000051!1.29e-25!53;CL:0000738!2.30e-24!140;CL:0002087!3.46e-24!119;CL:0000625!9.32e-21!11;CL:0000037!4.95e-19!172;CL:0000566!4.95e-19!172;CL:0002031!6.74e-19!124;CL:0000988!3.47e-17!182;CL:0002032!2.56e-15!165;CL:0000837!2.56e-15!165;CL:0000624!4.55e-14!6;CL:0000898!7.84e-08!3;CL:0000842!4.23e-07!3;CL:0000623!4.32e-07!3;CL:0000825!4.32e-07!3 | |ontology_enrichment_celltype=CL:0000791!8.21e-35!18;CL:0000789!8.21e-35!18;CL:0002420!8.21e-35!18;CL:0002419!8.21e-35!18;CL:0000790!8.21e-35!18;CL:0000084!6.93e-33!25;CL:0000827!6.93e-33!25;CL:0000838!2.77e-26!52;CL:0000542!1.29e-25!53;CL:0000051!1.29e-25!53;CL:0000738!2.30e-24!140;CL:0002087!3.46e-24!119;CL:0000625!9.32e-21!11;CL:0000037!4.95e-19!172;CL:0000566!4.95e-19!172;CL:0002031!6.74e-19!124;CL:0000988!3.47e-17!182;CL:0002032!2.56e-15!165;CL:0000837!2.56e-15!165;CL:0000624!4.55e-14!6;CL:0000898!7.84e-08!3;CL:0000842!4.23e-07!3;CL:0000623!4.32e-07!3;CL:0000825!4.32e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.56e-43;25!CL:0000791;5.84e-43;18!CL:0000789;5.84e-43;18!CL:0002419;5.84e-43;18!CL:0000624;1.21e-23;6!CL:0000625;1.78e-19;11!CL:0000542;2.12e-18;53!CL:0000898;1.29e-12;3!CL:0000226;2.45e-11;3!CL:0000623;2.45e-11;3!CL:0000842;2.45e-11;3!CL:0000815;7.14e-09;2!CL:0000792;7.14e-09;2!CL:0002677;7.14e-09;2!CL:0002087;7.68e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.52e-43,25;CL:0000827,1.52e-43,25;CL:0000791,5.80e-43,18;CL:0000789,5.80e-43,18;CL:0002420,5.80e-43,18;CL:0002419,5.80e-43,18;CL:0000790,5.80e-43,18;CL:0000838,1.87e-37,52;CL:0000542,1.26e-36,53;CL:0000051,1.26e-36,53;CL:0000624,1.12e-23,6;CL:0002087,1.62e-20,115;CL:0000625,1.50e-19,11;CL:0000738,4.24e-19,136;CL:0002031,5.30e-15,120;CL:0000037,5.10e-14,168;CL:0000988,6.32e-13,177;CL:0000898,1.20e-12,3;CL:0000226,2.33e-11,3;CL:0000842,2.33e-11,3;CL:0000623,2.42e-11,3;CL:0000825,2.42e-11,3;CL:0002032,1.65e-10,161;CL:0000837,1.65e-10,161;CL:0000815,6.76e-09,2;CL:0000792,6.76e-09,2;CL:0002677,6.76e-09,2;CL:0000893,2.51e-08,2;CL:0002489,2.51e-08,2;CL:0000809,2.51e-08,2;CL:0000808,2.51e-08,2;CL:0000894,2.51e-08,2;CL:0000806,2.51e-08,2;CL:0000807,2.51e-08,2;CL:0000805,2.51e-08,2;CL:0002425,2.51e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;5.84e-43;18!CL:0000051;2.12e-18;53!CL:0002425;1.87e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.93e-09!4;UBERON:0005058!1.93e-09!4;UBERON:0009113!1.93e-09!4;UBERON:0003295!1.93e-09!4;UBERON:0005562!1.93e-09!4;UBERON:0004177!1.19e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.28e-09;2!UBERON:0005058;7.28e-09;2!UBERON:0009113;7.28e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.75e-15,4;UBERON:0005058,1.75e-15,4;UBERON:0009113,1.75e-15,4;UBERON:0003295,1.75e-15,4;UBERON:0005562,1.75e-15,4;UBERON:0003351,2.45e-10,6;UBERON:0001042,2.66e-09,10;UBERON:0009145,2.66e-09,10;UBERON:0004177,7.31e-09,7;UBERON:0005057,7.31e-09,7;UBERON:0006562,2.01e-08,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52826811495903,1.55991119954897,1.41679406364623,0.786728553697808,1.15148819429164,0,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.671746422719773,0.971680998056939,0.515151135268373,0,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,1.35426486594342,0,0,0.224723484445085,0.306083892370903,0,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0,12.3927155171715,7.07419372948497,9.25206745497792,2.50779743086017,4.56291173287027,4.2610302516126,0,4.45641827540694,8.24896540929544,6.64601683750863,10.2905468230706,5.63601806792971,4.42201781703586,2.63100647365882,1.93445012450094,2.02862160014537,2.37258501059297,3.47803076516627,1.04535523804977,2.83273356743915,11.1133943144557,10.3088233644789,8.34964983664359,2.22995790026868,3.25541726928209,0.950452044448374,0.752875595388864,0.383959833463255,1.24930726552346,1.65744076430812,2.46338399076314,3.62892137804518,1.33720097891754,1.73789284659359,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12085143993527,2.1673383622212,2.15627574859517,1.92514554419623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,2.37285620900479,2.13455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.13929437434833,0.952927101831156,1.23408681925858,0,0,0.79312517629427,0,0,0,0,0,4.5530779742985,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36598618851383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30467975111558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0.22589216407792,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0.515663103788617,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,5.94217970491256,5.27635071514792,0,0.0636471582781649,0,0,0,3.97377112786066,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52826811495903,1.55991119954897,1.41679406364623,0.786728553697808,1.15148819429164,0,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.868043482863407,0.671746422719773,0.971680998056939,0.515151135268373,0,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,1.35426486594342,0,0,0.224723484445085,0.306083892370903,0,0,0,0.199463657621632,0,0.290209238628584,1.13477044938228,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0,12.3927155171715,7.07419372948497,9.25206745497792,2.50779743086017,4.56291173287027,4.2610302516126,0,4.45641827540694,8.24896540929544,6.64601683750863,10.2905468230706,5.63601806792971,4.42201781703586,2.63100647365882,1.93445012450094,2.02862160014537,2.37258501059297,3.47803076516627,1.04535523804977,2.83273356743915,11.1133943144557,10.3088233644789,8.34964983664359,2.22995790026868,3.25541726928209,0.950452044448374,0.752875595388864,0.383959833463255,1.24930726552346,1.65744076430812,2.46338399076314,3.62892137804518,1.33720097891754,1.73789284659359,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12085143993527,2.1673383622212,2.15627574859517,1.92514554419623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6541442089831,2.37285620900479,2.13455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,1.13929437434833,0.952927101831156,1.23408681925858,0,0,0.79312517629427,0,0,0,0,0,4.5530779742985,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0.0915975934018623,0,0,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36598618851383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.854299300541557,0,0.414239055347196,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,1.39991177098451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30467975111558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0.22589216407792,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0.515663103788617,0,0,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,5.94217970491256,5.27635071514792,0,0.0636471582781649,0,0,0,3.97377112786066,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.61019034872821,0 | ||
|short_description=p3@ICOS | |short_description=p3@ICOS | ||
}} | }} |
Latest revision as of 16:19, 19 September 2015
Short description: | p3@ICOS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ICOS_5end |
Coexpression cluster: | C23_CD4_CD8_Natural_Peripheral_Basophils_CD19_CD14 |
Association with transcript: | -11bp_to_ENST00000316386, NM_012092, uc002vam.2, uc010fua.2, uc010zip.1_5end |
EntrezGene: | ICOS |
HGNC: | 5351 |
UniProt: | Q9Y6W8Q53QY6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 1.75e-15 | 4 |
hemolymphoid system gland | 1.75e-15 | 4 |
thymic region | 1.75e-15 | 4 |
pharyngeal gland | 1.75e-15 | 4 |
thymus primordium | 1.75e-15 | 4 |
pharyngeal epithelium | 2.45e-10 | 6 |
chordate pharynx | 2.66e-09 | 10 |
pharyngeal region of foregut | 2.66e-09 | 10 |
hemopoietic organ | 7.31e-09 | 7 |
immune organ | 7.31e-09 | 7 |
pharynx | 2.01e-08 | 11 |