FFCP PHASE1:Hg19::chr3:113251252..113251263,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54847 | |EntrezGene=54847 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25967 | |HGNC=25967 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NXL6 | |UniProt=Q9NXL6 | ||
|association_with_transcript=34bp_to_ENST00000393830,NM_017699,uc003eaj.1,uc003eak.2,uc011bif.1,uc011big.1_5end | |association_with_transcript=34bp_to_ENST00000393830,NM_017699,uc003eaj.1,uc003eak.2,uc011bif.1,uc011big.1_5end | ||
|cluster_id=chr3:113251252..113251263,+ | |||
|description=CAGE_peak_8_at_SIDT1_5end | |description=CAGE_peak_8_at_SIDT1_5end | ||
|id=chr3:113251252..113251263,+ | |id=chr3:113251252..113251263,+ | ||
|ontology_enrichment_celltype=CL:0000838!1.34e-18!52;CL:0000542!4.15e-18!53;CL:0000051!4.15e-18!53;CL:0000945!3.56e-11!24;CL:0000826!3.56e-11!24;CL:0000791!2.08e-07!18;CL:0000789!2.08e-07!18;CL:0002420!2.08e-07!18;CL:0002419!2.08e-07!18;CL:0000790!2.08e-07!18;CL:0002087!2.52e-07!119;CL:0000084!4.32e-07!25;CL:0000827!4.32e-07!25;CL:0000738!6.79e-07!140 | |ontology_enrichment_celltype=CL:0000838!1.34e-18!52;CL:0000542!4.15e-18!53;CL:0000051!4.15e-18!53;CL:0000945!3.56e-11!24;CL:0000826!3.56e-11!24;CL:0000791!2.08e-07!18;CL:0000789!2.08e-07!18;CL:0002420!2.08e-07!18;CL:0002419!2.08e-07!18;CL:0000790!2.08e-07!18;CL:0002087!2.52e-07!119;CL:0000084!4.32e-07!25;CL:0000827!4.32e-07!25;CL:0000738!6.79e-07!140 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5093!1.53e-09!4;DOID:1612!1.53e-09!4 | |ontology_enrichment_disease=DOID:5093!1.53e-09!4;DOID:1612!1.53e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:630;7.81e-11;1!DOID:0050177;7.81e-11;1!DOID:0050427;7.81e-11;1!DOID:5093;1.21e-10;4!DOID:1612;1.21e-10;4 | |||
|ontology_enrichment_disease_v019_2=DOID:630,5.57e-11,1;DOID:0050177,5.57e-11,1;DOID:0050427,5.57e-11,1;DOID:5093,1.10e-10,4;DOID:1612,1.10e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0002619!9.54e-21!22;UBERON:0007023!3.26e-18!115;UBERON:0000956!8.43e-18!25;UBERON:0000203!8.43e-18!25;UBERON:0001950!1.91e-17!20;UBERON:0001869!7.27e-17!32;UBERON:0001893!1.35e-15!34;UBERON:0002791!2.54e-14!33;UBERON:0002020!8.98e-14!34;UBERON:0003528!8.98e-14!34;UBERON:0002780!1.03e-13!41;UBERON:0001890!1.03e-13!41;UBERON:0006240!1.03e-13!41;UBERON:0003080!2.87e-13!42;UBERON:0001049!5.21e-13!57;UBERON:0005068!5.21e-13!57;UBERON:0006241!5.21e-13!57;UBERON:0007135!5.21e-13!57;UBERON:0001017!1.52e-11!82;UBERON:0000349!1.99e-11!5;UBERON:0005743!1.12e-10!86;UBERON:0002616!5.17e-10!59;UBERON:0001871!1.16e-09!7;UBERON:0000955!1.69e-09!69;UBERON:0006238!1.69e-09!69;UBERON:0000073!5.22e-09!94;UBERON:0001016!5.22e-09!94;UBERON:0000200!9.94e-09!6;UBERON:0003075!3.24e-08!86;UBERON:0007284!3.24e-08!86;UBERON:0003056!1.25e-07!61;UBERON:0002346!1.40e-07!90;UBERON:0001872!1.50e-07!5;UBERON:0002771!6.75e-07!3 | |ontology_enrichment_uberon=UBERON:0002619!9.54e-21!22;UBERON:0007023!3.26e-18!115;UBERON:0000956!8.43e-18!25;UBERON:0000203!8.43e-18!25;UBERON:0001950!1.91e-17!20;UBERON:0001869!7.27e-17!32;UBERON:0001893!1.35e-15!34;UBERON:0002791!2.54e-14!33;UBERON:0002020!8.98e-14!34;UBERON:0003528!8.98e-14!34;UBERON:0002780!1.03e-13!41;UBERON:0001890!1.03e-13!41;UBERON:0006240!1.03e-13!41;UBERON:0003080!2.87e-13!42;UBERON:0001049!5.21e-13!57;UBERON:0005068!5.21e-13!57;UBERON:0006241!5.21e-13!57;UBERON:0007135!5.21e-13!57;UBERON:0001017!1.52e-11!82;UBERON:0000349!1.99e-11!5;UBERON:0005743!1.12e-10!86;UBERON:0002616!5.17e-10!59;UBERON:0001871!1.16e-09!7;UBERON:0000955!1.69e-09!69;UBERON:0006238!1.69e-09!69;UBERON:0000073!5.22e-09!94;UBERON:0001016!5.22e-09!94;UBERON:0000200!9.94e-09!6;UBERON:0003075!3.24e-08!86;UBERON:0007284!3.24e-08!86;UBERON:0003056!1.25e-07!61;UBERON:0002346!1.40e-07!90;UBERON:0001872!1.50e-07!5;UBERON:0002771!6.75e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.63e-21;20!UBERON:0001876;2.14e-20;2!UBERON:0002619;1.38e-19;22!UBERON:0000956;2.98e-17;25!UBERON:0000203;2.98e-17;25!UBERON:0002791;2.46e-13;32!UBERON:0001871;5.60e-13;6!UBERON:0001869;1.23e-12;32!UBERON:0001893;1.14e-11;34!UBERON:0002022;7.81e-11;1!UBERON:0003112;7.81e-11;1!UBERON:0011158;7.81e-11;1!UBERON:0003128;7.81e-11;1!UBERON:0001703;7.81e-11;1!UBERON:0002241;7.81e-11;1!UBERON:0003528;1.38e-10;34!UBERON:0002020;1.38e-10;34!UBERON:0002780;2.98e-09;41!UBERON:0001890;2.98e-09;41!UBERON:0000349;1.03e-08;5!UBERON:0001872;1.59e-08;5!UBERON:0000059;2.54e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001950,1.06e-21,20;UBERON:0001876,1.03e-20,2;UBERON:0002619,9.29e-20,22;UBERON:0000956,2.11e-17,25;UBERON:0000203,2.11e-17,25;UBERON:0002791,1.44e-13,32;UBERON:0001869,1.44e-13,32;UBERON:0001871,3.16e-13,6;UBERON:0003528,9.43e-13,34;UBERON:0002020,9.43e-13,34;UBERON:0001893,9.43e-13,34;UBERON:0002022,5.05e-11,1;UBERON:0003112,1.33e-10,1;UBERON:0011158,1.33e-10,1;UBERON:0003128,1.33e-10,1;UBERON:0001703,1.33e-10,1;UBERON:0002241,1.33e-10,1;UBERON:0004761,1.33e-10,1;UBERON:0009617,1.33e-10,1;UBERON:0002780,1.65e-10,41;UBERON:0001890,1.65e-10,41;UBERON:0003080,1.65e-10,41;UBERON:0006240,1.65e-10,41;UBERON:0000349,7.72e-09,5;UBERON:0000059,1.95e-08,11;UBERON:0001872,2.00e-08,5;UBERON:0000073,5.21e-08,53;UBERON:0002616,5.21e-08,53;UBERON:0001049,1.50e-07,56;UBERON:0005068,1.50e-07,56;UBERON:0006241,1.50e-07,56;UBERON:0007135,1.50e-07,56;UBERON:0007023,5.92e-07,114;UBERON:0003056,7.02e-07,61 | |||
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|short_description=p8@SIDT1 | |short_description=p8@SIDT1 | ||
}} | }} |
Latest revision as of 15:39, 19 September 2015
Short description: | p8@SIDT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SIDT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 34bp_to_ENST00000393830, NM_017699, uc003eaj.1, uc003eak.2, uc011bif.1, uc011big.1_5end |
EntrezGene: | SIDT1 |
HGNC: | 25967 |
UniProt: | Q9NXL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 1.06e-21 | 20 |
amygdala | 1.03e-20 | 2 |
regional part of cerebral cortex | 9.29e-20 | 22 |
cerebral cortex | 2.11e-17 | 25 |
pallium | 2.11e-17 | 25 |
regional part of telencephalon | 1.44e-13 | 32 |
cerebral hemisphere | 1.44e-13 | 32 |
temporal lobe | 3.16e-13 | 6 |
brain grey matter | 9.43e-13 | 34 |
gray matter | 9.43e-13 | 34 |
telencephalon | 9.43e-13 | 34 |
insula | 5.05e-11 | 1 |
olfactory region | 1.33e-10 | 1 |
primary subdivision of skull | 1.33e-10 | 1 |
cranium | 1.33e-10 | 1 |
neurocranium | 1.33e-10 | 1 |
chondrocranium | 1.33e-10 | 1 |
cartilaginous neurocranium | 1.33e-10 | 1 |
head paraxial mesoderm | 1.33e-10 | 1 |
regional part of forebrain | 1.65e-10 | 41 |
forebrain | 1.65e-10 | 41 |
anterior neural tube | 1.65e-10 | 41 |
future forebrain | 1.65e-10 | 41 |
limbic system | 7.72e-09 | 5 |
large intestine | 1.95e-08 | 11 |
parietal lobe | 2.00e-08 | 5 |
regional part of nervous system | 5.21e-08 | 53 |
regional part of brain | 5.21e-08 | 53 |
neural tube | 1.50e-07 | 56 |
neural rod | 1.50e-07 | 56 |
future spinal cord | 1.50e-07 | 56 |
neural keel | 1.50e-07 | 56 |
adult organism | 5.92e-07 | 114 |
pre-chordal neural plate | 7.02e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 5.57e-11 | 1 |
monogenic disease | 5.57e-11 | 1 |
xeroderma pigmentosum | 5.57e-11 | 1 |
thoracic cancer | 1.10e-10 | 4 |
breast cancer | 1.10e-10 | 4 |