FFCP PHASE1:Hg19::chr12:58003935..58003967,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:58003935..58003967,+
|short_description=p4@ARHGEF25
|description=CAGE_peak_4_at_ARHGEF25_5end
|association_with_transcript=0bp_to_ENST00000300189,ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=115557 | |EntrezGene=115557 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30275 | |HGNC=30275 | ||
|TSSclassifier=strong | |||
|UniProt=Q96M35,F8W7Z4,A9CQZ6,Q86VW2 | |UniProt=Q96M35,F8W7Z4,A9CQZ6,Q86VW2 | ||
|association_with_transcript=0bp_to_ENST00000300189,ENST00000333972,NM_001111270,uc009zpy.2_5end | |||
|cluster_id=chr12:58003935..58003967,+ | |||
|coexpression_cluster_id=C2225 | |||
|description=CAGE_peak_4_at_ARHGEF25_5end | |||
|id=chr12:58003935..58003967,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002561;4.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002561,3.19e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006603;8.25e-12;65!UBERON:0007297;4.91e-08;2!UBERON:0006965;1.30e-07;2!UBERON:0004872;1.94e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.92e-41!115;UBERON:0002346!4.41e-13!90;UBERON:0003075!1.42e-12!86;UBERON:0007284!1.42e-12!86;UBERON:0000481!2.82e-11!347;UBERON:0000468!4.23e-11!659;UBERON:0001049!1.20e-10!57;UBERON:0005068!1.20e-10!57;UBERON:0006241!1.20e-10!57;UBERON:0007135!1.20e-10!57;UBERON:0001017!1.58e-10!82;UBERON:0005743!2.20e-10!86;UBERON:0000922!4.34e-10!612;UBERON:0001893!9.44e-10!34;UBERON:0002020!1.11e-09!34;UBERON:0003528!1.11e-09!34;UBERON:0001869!1.37e-09!32;UBERON:0002791!3.60e-09!33;UBERON:0000073!5.70e-09!94;UBERON:0001016!5.70e-09!94;UBERON:0000062!7.17e-09!511;UBERON:0002616!7.27e-09!59;UBERON:0002050!2.35e-08!605;UBERON:0005423!2.35e-08!605;UBERON:0002780!4.73e-08!41;UBERON:0001890!4.73e-08!41;UBERON:0006240!4.73e-08!41;UBERON:0003056!6.42e-08!61;UBERON:0000923!6.42e-08!604;UBERON:0005291!6.42e-08!604;UBERON:0006598!6.42e-08!604;UBERON:0002532!6.42e-08!604;UBERON:0003080!1.00e-07!42;UBERON:0000475!1.17e-07!365;UBERON:0000955!1.30e-07!69;UBERON:0006238!1.30e-07!69;UBERON:0000956!2.91e-07!25;UBERON:0000203!2.91e-07!25;UBERON:0000924!4.73e-07!173;UBERON:0006601!4.73e-07!173;UBERON:0000467!5.20e-07!625;UBERON:0000480!6.10e-07!626;UBERON:0000153!8.23e-07!129;UBERON:0007811!8.23e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;2.24e-11;3!UBERON:0004054;2.24e-11;3!UBERON:0000922;3.40e-11;49!UBERON:0000160;9.83e-11;17!UBERON:0003135;1.63e-10;11!UBERON:0005904;1.27e-08;4!UBERON:0004921;1.47e-08;33!UBERON:0005409;4.28e-08;22!UBERON:0000059;1.17e-07;11!UBERON:0005090;1.66e-07;2!UBERON:0001630;1.66e-07;2!UBERON:0004175;3.92e-07;21!UBERON:0000341;4.81e-07;2!UBERON:0005933;4.81e-07;2!UBERON:0005942;4.81e-07;2!UBERON:0005932;4.81e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.01e-21,114;UBERON:0006947,2.36e-11,3;UBERON:0004054,2.36e-11,3;UBERON:0000160,8.97e-11,17;UBERON:0003135,1.79e-10,11;UBERON:0005409,8.05e-09,25;UBERON:0005904,1.33e-08,4;UBERON:0000059,1.15e-07,11;UBERON:0005090,1.96e-07,2;UBERON:0001630,1.96e-07,2;UBERON:0005933,3.19e-07,2;UBERON:0005942,3.19e-07,2;UBERON:0005932,3.19e-07,2;UBERON:0000341,4.82e-07,2 | |||
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| ||
|short_description=p4@ARHGEF25 | |||
}} | }} |
Latest revision as of 15:37, 19 September 2015
Short description: | p4@ARHGEF25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF25_5end |
Coexpression cluster: | C2225_uterus_smooth_ductus_cervix_prostate_heart_umbilical |
Association with transcript: | 0bp_to_ENST00000300189, ENST00000333972, NM_001111270, uc009zpy.2_5end |
EntrezGene: | ARHGEF25 |
HGNC: | 30275 |
UniProt: | Q96M35F8W7Z4A9CQZ6Q86VW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
outer root sheath cell | 3.19e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.01e-21 | 114 |
male genital duct | 2.36e-11 | 3 |
internal male genitalia | 2.36e-11 | 3 |
intestine | 8.97e-11 | 17 |
male reproductive organ | 1.79e-10 | 11 |
gastrointestinal system | 8.05e-09 | 25 |
duct of male reproductive system | 1.33e-08 | 4 |
large intestine | 1.15e-07 | 11 |
muscle structure | 1.96e-07 | 2 |
muscle organ | 1.96e-07 | 2 |
hair root sheath | 3.19e-07 | 2 |
hair outer root sheath | 3.19e-07 | 2 |
bulb of hair follicle | 3.19e-07 | 2 |
throat | 4.82e-07 | 2 |