FFCP PHASE1:Hg19::chr19:51891222..51891233,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3982 | |EntrezGene=3982 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6610 | |HGNC=6610 | ||
|TSSclassifier=strong | |||
|UniProt=P55344 | |UniProt=P55344 | ||
|association_with_transcript=-12bp_to_ENST00000221973,NM_001161748,NM_030657,uc002pwl.2,uc002pwm.2_5end | |association_with_transcript=-12bp_to_ENST00000221973,NM_001161748,NM_030657,uc002pwl.2,uc002pwm.2_5end | ||
|cluster_id=chr19:51891222..51891233,- | |||
|coexpression_cluster_id=C369 | |coexpression_cluster_id=C369 | ||
|description=CAGE_peak_1_at_LIM2_5end | |description=CAGE_peak_1_at_LIM2_5end | ||
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|ontology_enrichment_celltype=CL:0002322!6.48e-44!5;CL:0000623!2.69e-26!3;CL:0000825!2.69e-26!3;CL:0000306!6.77e-21!4;CL:0002222!6.77e-21!4;CL:0002224!6.77e-21!4;CL:0000075!1.98e-15!27;CL:0000767!9.38e-13!3;CL:0000842!2.83e-12!3;CL:0000224!1.97e-09!4;CL:0000148!1.56e-08!10;CL:0000541!1.56e-08!10;CL:0000325!8.71e-08!39;CL:0000710!2.85e-07!20 | |ontology_enrichment_celltype=CL:0002322!6.48e-44!5;CL:0000623!2.69e-26!3;CL:0000825!2.69e-26!3;CL:0000306!6.77e-21!4;CL:0002222!6.77e-21!4;CL:0002224!6.77e-21!4;CL:0000075!1.98e-15!27;CL:0000767!9.38e-13!3;CL:0000842!2.83e-12!3;CL:0000224!1.97e-09!4;CL:0000148!1.56e-08!10;CL:0000541!1.56e-08!10;CL:0000325!8.71e-08!39;CL:0000710!2.85e-07!20 | ||
|ontology_enrichment_celltype_v019=CL:0000306;4.26e-74;4!CL:0002222;4.26e-74;4!CL:0002224;4.26e-74;4!CL:0000075;4.30e-20;27!CL:0000767;2.89e-12;3!CL:0002322;6.13e-08;5 | |ontology_enrichment_celltype_v019=CL:0000306;4.26e-74;4!CL:0002222;4.26e-74;4!CL:0002224;4.26e-74;4!CL:0000075;4.30e-20;27!CL:0000767;2.89e-12;3!CL:0002322;6.13e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000306,5.48e-74,4;CL:0002222,5.48e-74,4;CL:0002224,5.48e-74,4;CL:0000075,4.52e-20,27;CL:0000767,2.59e-12,3;CL:0002322,6.13e-08,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0010077!6.77e-21!4;UBERON:0005389!6.77e-21!4;UBERON:0000484!6.77e-21!4;UBERON:0002546!6.77e-21!4;UBERON:0000965!6.77e-21!4;UBERON:0001803!6.77e-21!4;UBERON:0003073!6.77e-21!4;UBERON:0005426!6.77e-21!4;UBERON:0000970!5.45e-11!20;UBERON:0000076!9.93e-11!8;UBERON:0002104!1.85e-10!21;UBERON:0000020!1.56e-09!23;UBERON:0000178!2.42e-09!15;UBERON:0000179!2.42e-09!15;UBERON:0000463!2.42e-09!15;UBERON:0001032!3.96e-09!24;UBERON:0004456!3.96e-09!24;UBERON:0007625!6.22e-08!11;UBERON:0000019!1.22e-07!19;UBERON:0000047!1.22e-07!19;UBERON:0004088!1.22e-07!19;UBERON:0003072!1.22e-07!19;UBERON:0003071!1.22e-07!19;UBERON:0004128!1.22e-07!19;UBERON:0001456!6.35e-07!21 | |ontology_enrichment_uberon=UBERON:0010077!6.77e-21!4;UBERON:0005389!6.77e-21!4;UBERON:0000484!6.77e-21!4;UBERON:0002546!6.77e-21!4;UBERON:0000965!6.77e-21!4;UBERON:0001803!6.77e-21!4;UBERON:0003073!6.77e-21!4;UBERON:0005426!6.77e-21!4;UBERON:0000970!5.45e-11!20;UBERON:0000076!9.93e-11!8;UBERON:0002104!1.85e-10!21;UBERON:0000020!1.56e-09!23;UBERON:0000178!2.42e-09!15;UBERON:0000179!2.42e-09!15;UBERON:0000463!2.42e-09!15;UBERON:0001032!3.96e-09!24;UBERON:0004456!3.96e-09!24;UBERON:0007625!6.22e-08!11;UBERON:0000019!1.22e-07!19;UBERON:0000047!1.22e-07!19;UBERON:0004088!1.22e-07!19;UBERON:0003072!1.22e-07!19;UBERON:0003071!1.22e-07!19;UBERON:0004128!1.22e-07!19;UBERON:0001456!6.35e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;4.26e-74;4!UBERON:0005389;4.26e-74;4!UBERON:0000484;4.26e-74;4!UBERON:0000965;4.26e-74;4!UBERON:0001803;4.26e-74;4!UBERON:0007625;1.28e-27;11!UBERON:0000970;6.78e-27;20!UBERON:0002104;1.19e-25;21!UBERON:0000020;1.74e-23;23!UBERON:0001032;1.54e-22;24!UBERON:0004456;1.54e-22;24!UBERON:0001801;6.67e-22;14!UBERON:0000019;2.27e-16;19!UBERON:0000047;2.27e-16;19!UBERON:0004088;2.27e-16;19!UBERON:0010230;2.27e-16;19!UBERON:0001456;6.85e-15;21!UBERON:0010371;3.95e-10;31!UBERON:0000490;5.24e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0010077;4.26e-74;4!UBERON:0005389;4.26e-74;4!UBERON:0000484;4.26e-74;4!UBERON:0000965;4.26e-74;4!UBERON:0001803;4.26e-74;4!UBERON:0007625;1.28e-27;11!UBERON:0000970;6.78e-27;20!UBERON:0002104;1.19e-25;21!UBERON:0000020;1.74e-23;23!UBERON:0001032;1.54e-22;24!UBERON:0004456;1.54e-22;24!UBERON:0001801;6.67e-22;14!UBERON:0000019;2.27e-16;19!UBERON:0000047;2.27e-16;19!UBERON:0004088;2.27e-16;19!UBERON:0010230;2.27e-16;19!UBERON:0001456;6.85e-15;21!UBERON:0010371;3.95e-10;31!UBERON:0000490;5.24e-08;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,5.48e-74,4;UBERON:0005389,5.48e-74,4;UBERON:0000484,5.48e-74,4;UBERON:0002546,5.48e-74,4;UBERON:0000965,5.48e-74,4;UBERON:0001803,5.48e-74,4;UBERON:0003073,5.48e-74,4;UBERON:0005426,5.48e-74,4;UBERON:0000076,1.51e-37,8;UBERON:0007625,1.40e-27,11;UBERON:0000970,1.27e-25,21;UBERON:0002104,1.27e-25,21;UBERON:0000020,1.63e-22,24;UBERON:0001032,1.63e-22,24;UBERON:0004456,1.63e-22,24;UBERON:0001801,7.17e-22,14;UBERON:0000019,1.43e-15,20;UBERON:0000047,1.43e-15,20;UBERON:0010312,1.43e-15,20;UBERON:0004088,1.43e-15,20;UBERON:0010230,1.43e-15,20;UBERON:0003072,1.43e-15,20;UBERON:0004128,1.43e-15,20;UBERON:0003071,1.43e-15,20;UBERON:0001456,3.13e-14,22;UBERON:0005085,2.52e-10,31;UBERON:0001444,8.74e-07,49 | |||
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|short_description=p1@LIM2 | |short_description=p1@LIM2 | ||
}} | }} |
Latest revision as of 14:43, 19 September 2015
Short description: | p1@LIM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIM2_5end |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | -12bp_to_ENST00000221973, NM_001161748, NM_030657, uc002pwl.2, uc002pwm.2_5end |
EntrezGene: | LIM2 |
HGNC: | 6610 |
UniProt: | P55344 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 5.48e-74 | 4 |
vertebrate lens cell | 5.48e-74 | 4 |
lens epithelial cell | 5.48e-74 | 4 |
columnar/cuboidal epithelial cell | 4.52e-20 | 27 |
basophil | 2.59e-12 | 3 |
embryonic stem cell | 6.13e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 5.48e-74 | 4 |
transparent eye structure | 5.48e-74 | 4 |
simple cuboidal epithelium | 5.48e-74 | 4 |
cranial placode | 5.48e-74 | 4 |
lens of camera-type eye | 5.48e-74 | 4 |
epithelium of lens | 5.48e-74 | 4 |
lens placode | 5.48e-74 | 4 |
lens vesicle | 5.48e-74 | 4 |
external ectoderm | 1.51e-37 | 8 |
pigment epithelium of eye | 1.40e-27 | 11 |
eye | 1.27e-25 | 21 |
visual system | 1.27e-25 | 21 |
sense organ | 1.63e-22 | 24 |
sensory system | 1.63e-22 | 24 |
entire sense organ system | 1.63e-22 | 24 |
anterior segment of eyeball | 7.17e-22 | 14 |
camera-type eye | 1.43e-15 | 20 |
simple eye | 1.43e-15 | 20 |
immature eye | 1.43e-15 | 20 |
ocular region | 1.43e-15 | 20 |
eyeball of camera-type eye | 1.43e-15 | 20 |
optic cup | 1.43e-15 | 20 |
optic vesicle | 1.43e-15 | 20 |
eye primordium | 1.43e-15 | 20 |
face | 3.13e-14 | 22 |
ectodermal placode | 2.52e-10 | 31 |
subdivision of head | 8.74e-07 | 49 |