FFCP PHASE1:Hg19::chr6:105404974..105404989,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389421 | |EntrezGene=389421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32207 | |HGNC=32207 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZN17 | |UniProt=Q6ZN17 | ||
|association_with_transcript=51bp_to_ENST00000345080,NM_001004317,uc003pqv.1_5end | |association_with_transcript=51bp_to_ENST00000345080,NM_001004317,uc003pqv.1_5end | ||
|cluster_id=chr6:105404974..105404989,+ | |||
|coexpression_cluster_id=C1967 | |coexpression_cluster_id=C1967 | ||
|description=CAGE_peak_2_at_LIN28B_5end | |description=CAGE_peak_2_at_LIN28B_5end | ||
|id=chr6:105404974..105404989,+ | |id=chr6:105404974..105404989,+ | ||
|ontology_enrichment_celltype=CL:0002322!3.38e-11!5;CL:0000133!2.70e-08!59;CL:0000333!2.63e-07!41;CL:0000039!4.03e-07!7;CL:0000586!4.03e-07!7;CL:0000221!7.18e-07!71;CL:0002319!8.40e-07!25 | |ontology_enrichment_celltype=CL:0002322!3.38e-11!5;CL:0000133!2.70e-08!59;CL:0000333!2.63e-07!41;CL:0000039!4.03e-07!7;CL:0000586!4.03e-07!7;CL:0000221!7.18e-07!71;CL:0002319!8.40e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.26e-16;5!CL:0002321;4.54e-16;15!CL:0000333;1.17e-10;5!CL:0000039;2.61e-07;7!CL:0000586;2.61e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.78e-16,5;CL:0000039,3.13e-07,7;CL:0000586,3.13e-07,7;CL:0000133,3.91e-07,59;CL:0000333,7.87e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.19e-07;10!UBERON:0005564;1.19e-07;10 | |||
|ontology_enrichment_disease=DOID:14566!2.27e-20!239;DOID:162!2.62e-19!235;DOID:3095!5.52e-18!22;DOID:2994!5.52e-18!22;DOID:171!1.23e-12!10;DOID:2531!2.56e-12!51;DOID:0060083!2.56e-12!51;DOID:169!2.89e-12!6;DOID:1240!3.31e-11!39;DOID:0050687!1.39e-10!143;DOID:8692!5.72e-10!31;DOID:1036!1.47e-09!8;DOID:0050686!6.50e-08!137 | |ontology_enrichment_disease=DOID:14566!2.27e-20!239;DOID:162!2.62e-19!235;DOID:3095!5.52e-18!22;DOID:2994!5.52e-18!22;DOID:171!1.23e-12!10;DOID:2531!2.56e-12!51;DOID:0060083!2.56e-12!51;DOID:169!2.89e-12!6;DOID:1240!3.31e-11!39;DOID:0050687!1.39e-10!143;DOID:8692!5.72e-10!31;DOID:1036!1.47e-09!8;DOID:0050686!6.50e-08!137 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.70e-18;22!DOID:2994;1.70e-18;22!DOID:171;2.11e-11;10!DOID:1036;9.68e-11;8!DOID:169;6.92e-09;6!DOID:8692;1.44e-08;31!DOID:1240;9.71e-08;39!DOID:74;1.34e-07;2!DOID:2531;2.02e-07;51!DOID:0060083;2.02e-07;51!DOID:154;3.62e-07;2!DOID:4236;3.62e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.71e-18,22;DOID:2994,1.71e-18,22;DOID:14566,9.30e-18,239;DOID:162,2.59e-17,235;DOID:171,1.71e-11,10;DOID:1036,9.59e-11,8;DOID:0050687,1.11e-10,143;DOID:1240,1.12e-09,39;DOID:2531,1.67e-09,51;DOID:0060083,1.67e-09,51;DOID:169,5.27e-09,6;DOID:8692,9.32e-09,31;DOID:74,1.56e-07,2;DOID:0050686,1.88e-07,137;DOID:154,3.51e-07,2;DOID:4236,3.51e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000013!8.43e-11!5;UBERON:0002410!8.43e-11!5;UBERON:0000010!1.13e-10!8 | |ontology_enrichment_uberon=UBERON:0000013!8.43e-11!5;UBERON:0002410!8.43e-11!5;UBERON:0000010!1.13e-10!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000013;1.17e-10;5!UBERON:0002410;1.17e-10;5!UBERON:0000010;1.03e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,8.41e-11,5;UBERON:0002410,8.41e-11,5;UBERON:0000010,8.42e-09,8 | |||
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| ||
|short_description=p2@LIN28B | |short_description=p2@LIN28B | ||
}} | }} |
Latest revision as of 13:54, 19 September 2015
Short description: | p2@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIN28B_5end |
Coexpression cluster: | C1967_anaplastic_embryonic_hepatoblastoma_chronic_hepatocellular_Wilms_hereditary |
Association with transcript: | 51bp_to_ENST00000345080, NM_001004317, uc003pqv.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | Q6ZN17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.78e-16 | 5 |
germ line cell | 3.13e-07 | 7 |
germ cell | 3.13e-07 | 7 |
neurectodermal cell | 3.91e-07 | 59 |
migratory neural crest cell | 7.87e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 8.41e-11 | 5 |
autonomic nervous system | 8.41e-11 | 5 |
peripheral nervous system | 8.42e-09 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.71e-18 | 22 |
germ cell cancer | 1.71e-18 | 22 |
disease of cellular proliferation | 9.30e-18 | 239 |
cancer | 2.59e-17 | 235 |
neuroectodermal tumor | 1.71e-11 | 10 |
chronic leukemia | 9.59e-11 | 8 |
cell type cancer | 1.11e-10 | 143 |
leukemia | 1.12e-09 | 39 |
hematologic cancer | 1.67e-09 | 51 |
immune system cancer | 1.67e-09 | 51 |
neuroendocrine tumor | 5.27e-09 | 6 |
myeloid leukemia | 9.32e-09 | 31 |
hematopoietic system disease | 1.56e-07 | 2 |
organ system cancer | 1.88e-07 | 137 |
mixed cell type cancer | 3.51e-07 | 2 |
carcinosarcoma | 3.51e-07 | 2 |