FFCP PHASE1:Hg19::chr2:20251406..20251451,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9741 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6924 | |||
|TSSclassifier=strong | |||
|UniProt=Q15012,Q6IBP4 | |||
|association_with_transcript=337bp_to_ENST00000175091,NM_014713,uc002rdm.2,uc002rdn.2,uc010yjx.1_5end | |||
|cluster_id=chr2:20251406..20251451,- | |||
|coexpression_cluster_id=C4173 | |||
|description=CAGE_peak_2_at_LAPTM4A_5end | |||
|id=chr2:20251406..20251451,- | |||
|ontology_enrichment_celltype=CL:0000055!6.64e-15!180;CL:0000548!1.32e-10!679;CL:0000004!1.32e-10!679;CL:0000255!1.32e-10!679;CL:0000222!3.65e-10!119;CL:0000057!5.08e-10!75;CL:0002321!5.15e-10!248;CL:0000012!5.37e-10!682;CL:0000220!1.16e-09!246;CL:0000144!3.01e-09!625;CL:0000066!1.86e-08!254;CL:0000183!3.09e-08!59;CL:0002371!7.34e-08!591;CL:0000192!8.03e-08!42;CL:0000514!8.03e-08!42;CL:1000497!1.14e-07!18;CL:0002518!1.14e-07!18;CL:0000680!7.26e-07!57;CL:0000056!7.26e-07!57;CL:0000355!7.26e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.16e-11;19!CL:0000134;1.26e-10;55!CL:0000048;1.18e-08;58!CL:0000723;1.78e-08;61!CL:1000497;1.22e-07;17!CL:0002518;1.22e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.11e-11,19;CL:0000222,1.99e-10,121;CL:0000057,2.05e-10,76;CL:0002321,2.91e-10,250;CL:0000066,2.34e-08,253;CL:0000192,6.44e-08,43;CL:0000514,6.44e-08,43;CL:1000497,1.19e-07,17;CL:0002518,1.19e-07,17;CL:0000680,5.73e-07,58;CL:0000056,5.73e-07,58;CL:0000355,5.73e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.95e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.89e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.95e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!2.25e-18!659;UBERON:0002100!2.51e-16!216;UBERON:0005256!1.49e-14!143;UBERON:0000926!1.21e-13!448;UBERON:0004120!1.21e-13!448;UBERON:0006603!1.21e-13!448;UBERON:0000467!5.87e-13!625;UBERON:0000480!1.12e-12!626;UBERON:0000466!7.68e-12!126;UBERON:0003104!3.18e-11!238;UBERON:0009142!3.18e-11!238;UBERON:0009569!3.98e-11!113;UBERON:0005631!3.47e-10!14;UBERON:0000158!3.47e-10!14;UBERON:0003886!4.38e-10!63;UBERON:0000464!4.92e-10!104;UBERON:0005156!6.30e-10!59;UBERON:0000990!6.30e-10!59;UBERON:0000062!8.42e-10!511;UBERON:0002553!1.19e-09!70;UBERON:0000475!2.66e-09!365;UBERON:0003914!3.49e-09!118;UBERON:0002417!8.26e-09!61;UBERON:0000916!8.26e-09!61;UBERON:0000481!2.21e-08!347;UBERON:0000922!5.74e-08!612;UBERON:0003133!6.17e-08!48;UBERON:0000478!8.23e-08!24;UBERON:0003064!9.08e-08!37;UBERON:0006554!1.85e-07!44;UBERON:0001008!2.22e-07!45;UBERON:0004923!2.51e-07!57;UBERON:0000353!3.41e-07!17;UBERON:0002050!4.26e-07!605;UBERON:0005423!4.26e-07!605;UBERON:0000923!4.77e-07!604;UBERON:0005291!4.77e-07!604;UBERON:0006598!4.77e-07!604;UBERON:0002532!4.77e-07!604;UBERON:0005172!8.86e-07!55;UBERON:0005173!8.86e-07!55;UBERON:0000914!9.77e-07!83;UBERON:0002329!9.77e-07!83;UBERON:0003077!9.77e-07!83;UBERON:0003059!9.77e-07!83;UBERON:0007282!9.77e-07!83;UBERON:0009618!9.77e-07!83;UBERON:0007285!9.77e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.37e-08;10!UBERON:0000158;4.37e-08;10!UBERON:0000478;8.16e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,7.25e-15,199;UBERON:0003104,7.69e-14,160;UBERON:0009142,7.69e-14,160;UBERON:0009569,8.37e-11,112;UBERON:0005256,2.44e-10,122;UBERON:0005631,3.47e-10,14;UBERON:0000158,3.47e-10,14;UBERON:0005156,6.30e-10,59;UBERON:0000990,6.30e-10,59;UBERON:0003914,4.47e-09,117;UBERON:0006554,4.69e-09,47;UBERON:0001008,5.85e-09,48;UBERON:0002417,1.05e-08,60;UBERON:0000916,1.05e-08,60;UBERON:0003133,6.17e-08,48;UBERON:0000478,8.23e-08,24;UBERON:0000926,1.15e-07,315;UBERON:0004120,1.15e-07,315;UBERON:0006603,1.15e-07,315;UBERON:0004923,1.26e-07,66;UBERON:0003886,2.45e-07,54;UBERON:0000922,3.03e-07,592;UBERON:0002553,5.04e-07,61;UBERON:0007503,7.62e-07,78 | |||
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| |||
|short_description=p2@LAPTM4A | |||
}} |
Latest revision as of 13:39, 19 September 2015
Short description: | p2@LAPTM4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAPTM4A_5end |
Coexpression cluster: | C4173_Smooth_mesenchymal_amniotic_tenocyte_ductus_seminal_Synoviocyte |
Association with transcript: | 337bp_to_ENST00000175091, NM_014713, uc002rdm.2, uc002rdn.2, uc010yjx.1_5end |
EntrezGene: | LAPTM4A |
HGNC: | 6924 |
UniProt: | Q15012Q6IBP4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.11e-11 | 19 |
mesodermal cell | 1.99e-10 | 121 |
fibroblast | 2.05e-10 | 76 |
embryonic cell | 2.91e-10 | 250 |
epithelial cell | 2.34e-08 | 253 |
smooth muscle cell | 6.44e-08 | 43 |
smooth muscle myoblast | 6.44e-08 | 43 |
kidney cell | 1.19e-07 | 17 |
kidney epithelial cell | 1.19e-07 | 17 |
muscle precursor cell | 5.73e-07 | 58 |
myoblast | 5.73e-07 | 58 |
multi-potent skeletal muscle stem cell | 5.73e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk | 7.25e-15 | 199 |
mesenchyme | 7.69e-14 | 160 |
entire embryonic mesenchyme | 7.69e-14 | 160 |
subdivision of trunk | 8.37e-11 | 112 |
trunk mesenchyme | 2.44e-10 | 122 |
extraembryonic membrane | 3.47e-10 | 14 |
membranous layer | 3.47e-10 | 14 |
reproductive structure | 6.30e-10 | 59 |
reproductive system | 6.30e-10 | 59 |
epithelial tube | 4.47e-09 | 117 |
urinary system structure | 4.69e-09 | 47 |
renal system | 5.85e-09 | 48 |
abdominal segment of trunk | 1.05e-08 | 60 |
abdomen | 1.05e-08 | 60 |
reproductive organ | 6.17e-08 | 48 |
extraembryonic structure | 8.23e-08 | 24 |
mesoderm | 1.15e-07 | 315 |
mesoderm-derived structure | 1.15e-07 | 315 |
presumptive mesoderm | 1.15e-07 | 315 |
organ component layer | 1.26e-07 | 66 |
body cavity precursor | 2.45e-07 | 54 |
embryo | 3.03e-07 | 592 |
anatomical cavity | 5.04e-07 | 61 |
epithelial vesicle | 7.62e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.95e-07 | 14 |