FFCP PHASE1:Hg19::chr22:27017921..27017928,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1413 | |EntrezGene=1413 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2396 | |HGNC=2396 | ||
|TSSclassifier=strong | |||
|UniProt=P53673 | |UniProt=P53673 | ||
|association_with_transcript=0bp_to_ENST00000354760,NM_001886,uc003acz.3_5end | |association_with_transcript=0bp_to_ENST00000354760,NM_001886,uc003acz.3_5end | ||
|cluster_id=chr22:27017921..27017928,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_CRYBA4_5end | |description=CAGE_peak_1_at_CRYBA4_5end | ||
|id=chr22:27017921..27017928,+ | |id=chr22:27017921..27017928,+ | ||
|ontology_enrichment_celltype=CL:0002322!4.76e-48!5;CL:0000306!1.01e-22!4;CL:0002222!1.01e-22!4;CL:0002224!1.01e-22!4;CL:0000075!6.51e-17!27;CL:0000540!1.19e-14!6;CL:0000031!1.19e-14!6;CL:0000404!1.19e-14!6;CL:0000047!3.92e-11!8;CL:0000148!2.36e-09!10;CL:0000541!2.36e-09!10;CL:0000133!5.41e-09!59;CL:0000325!1.32e-08!39;CL:0000710!6.40e-08!20;CL:0000221!2.37e-07!71;CL:0000147!8.19e-07!14 | |ontology_enrichment_celltype=CL:0002322!4.76e-48!5;CL:0000306!1.01e-22!4;CL:0002222!1.01e-22!4;CL:0002224!1.01e-22!4;CL:0000075!6.51e-17!27;CL:0000540!1.19e-14!6;CL:0000031!1.19e-14!6;CL:0000404!1.19e-14!6;CL:0000047!3.92e-11!8;CL:0000148!2.36e-09!10;CL:0000541!2.36e-09!10;CL:0000133!5.41e-09!59;CL:0000325!1.32e-08!39;CL:0000710!6.40e-08!20;CL:0000221!2.37e-07!71;CL:0000147!8.19e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000306;3.80e-56;4!CL:0002222;3.80e-56;4!CL:0002224;3.80e-56;4!CL:0002322;9.93e-45;5!CL:0000075;5.86e-33;27!CL:0000148;8.04e-23;10!CL:0000147;1.56e-16;14!CL:0002321;1.76e-15;15!CL:0000710;8.58e-12;20!CL:0002077;6.55e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,3.80e-56,4;CL:0002222,3.80e-56,4;CL:0002224,3.80e-56,4;CL:0002322,9.94e-45,5;CL:0000075,5.86e-33,27;CL:0000148,8.04e-23,10;CL:0000541,8.04e-23,10;CL:0000147,1.56e-16,14;CL:0000710,8.58e-12,20;CL:0002077,3.36e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0010077!1.01e-22!4;UBERON:0005389!1.01e-22!4;UBERON:0000484!1.01e-22!4;UBERON:0002546!1.01e-22!4;UBERON:0000965!1.01e-22!4;UBERON:0001803!1.01e-22!4;UBERON:0003073!1.01e-22!4;UBERON:0005426!1.01e-22!4;UBERON:0000970!6.25e-17!20;UBERON:0002104!4.17e-16!21;UBERON:0000020!1.14e-14!23;UBERON:0007625!2.41e-14!11;UBERON:0001032!4.82e-14!24;UBERON:0004456!4.82e-14!24;UBERON:0000019!1.65e-12!19;UBERON:0000047!1.65e-12!19;UBERON:0004088!1.65e-12!19;UBERON:0003072!1.65e-12!19;UBERON:0003071!1.65e-12!19;UBERON:0004128!1.65e-12!19;UBERON:0000076!1.17e-11!8;UBERON:0001801!2.58e-11!14;UBERON:0001456!2.63e-11!21;UBERON:0005085!3.81e-08!29 | |ontology_enrichment_uberon=UBERON:0010077!1.01e-22!4;UBERON:0005389!1.01e-22!4;UBERON:0000484!1.01e-22!4;UBERON:0002546!1.01e-22!4;UBERON:0000965!1.01e-22!4;UBERON:0001803!1.01e-22!4;UBERON:0003073!1.01e-22!4;UBERON:0005426!1.01e-22!4;UBERON:0000970!6.25e-17!20;UBERON:0002104!4.17e-16!21;UBERON:0000020!1.14e-14!23;UBERON:0007625!2.41e-14!11;UBERON:0001032!4.82e-14!24;UBERON:0004456!4.82e-14!24;UBERON:0000019!1.65e-12!19;UBERON:0000047!1.65e-12!19;UBERON:0004088!1.65e-12!19;UBERON:0003072!1.65e-12!19;UBERON:0003071!1.65e-12!19;UBERON:0004128!1.65e-12!19;UBERON:0000076!1.17e-11!8;UBERON:0001801!2.58e-11!14;UBERON:0001456!2.63e-11!21;UBERON:0005085!3.81e-08!29 | ||
|ontology_enrichment_uberon_v019=UBERON:0010077;3.80e-56;4!UBERON:0005389;3.80e-56;4!UBERON:0000484;3.80e-56;4!UBERON:0000965;3.80e-56;4!UBERON:0001803;3.80e-56;4!UBERON:0007625;5.33e-21;11!UBERON:0000970;2.30e-20;20!UBERON:0002104;2.02e-19;21!UBERON:0000020;8.82e-18;23!UBERON:0001032;4.61e-17;24!UBERON:0004456;4.61e-17;24!UBERON:0001801;1.14e-16;14!UBERON:0000019;1.77e-12;19!UBERON:0000047;1.77e-12;19!UBERON:0004088;1.77e-12;19!UBERON:0010230;1.77e-12;19!UBERON:0001456;2.34e-11;21!UBERON:0010371;9.45e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,3.80e-56,4;UBERON:0005389,3.80e-56,4;UBERON:0000484,3.80e-56,4;UBERON:0002546,3.80e-56,4;UBERON:0000965,3.80e-56,4;UBERON:0001803,3.80e-56,4;UBERON:0003073,3.80e-56,4;UBERON:0005426,3.80e-56,4;UBERON:0000076,1.49e-28,8;UBERON:0007625,5.33e-21,11;UBERON:0000970,2.02e-19,21;UBERON:0002104,2.02e-19,21;UBERON:0000020,4.61e-17,24;UBERON:0001032,4.61e-17,24;UBERON:0004456,4.61e-17,24;UBERON:0001801,1.14e-16,14;UBERON:0000019,6.87e-12,20;UBERON:0000047,6.87e-12,20;UBERON:0010312,6.87e-12,20;UBERON:0004088,6.87e-12,20;UBERON:0010230,6.87e-12,20;UBERON:0003072,6.87e-12,20;UBERON:0004128,6.87e-12,20;UBERON:0003071,6.87e-12,20;UBERON:0001456,7.16e-11,22;UBERON:0005085,6.69e-08,31 | |||
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|short_description=p1@CRYBA4 | |short_description=p1@CRYBA4 | ||
}} | }} |
Latest revision as of 13:15, 19 September 2015
Short description: | p1@CRYBA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CRYBA4_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000354760, NM_001886, uc003acz.3_5end |
EntrezGene: | CRYBA4 |
HGNC: | 2396 |
UniProt: | P53673 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 3.80e-56 | 4 |
vertebrate lens cell | 3.80e-56 | 4 |
lens epithelial cell | 3.80e-56 | 4 |
embryonic stem cell | 9.94e-45 | 5 |
columnar/cuboidal epithelial cell | 5.86e-33 | 27 |
melanocyte | 8.04e-23 | 10 |
melanoblast | 8.04e-23 | 10 |
pigment cell | 1.56e-16 | 14 |
neurecto-epithelial cell | 8.58e-12 | 20 |
ecto-epithelial cell | 3.36e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 3.80e-56 | 4 |
transparent eye structure | 3.80e-56 | 4 |
simple cuboidal epithelium | 3.80e-56 | 4 |
cranial placode | 3.80e-56 | 4 |
lens of camera-type eye | 3.80e-56 | 4 |
epithelium of lens | 3.80e-56 | 4 |
lens placode | 3.80e-56 | 4 |
lens vesicle | 3.80e-56 | 4 |
external ectoderm | 1.49e-28 | 8 |
pigment epithelium of eye | 5.33e-21 | 11 |
eye | 2.02e-19 | 21 |
visual system | 2.02e-19 | 21 |
sense organ | 4.61e-17 | 24 |
sensory system | 4.61e-17 | 24 |
entire sense organ system | 4.61e-17 | 24 |
anterior segment of eyeball | 1.14e-16 | 14 |
camera-type eye | 6.87e-12 | 20 |
simple eye | 6.87e-12 | 20 |
immature eye | 6.87e-12 | 20 |
ocular region | 6.87e-12 | 20 |
eyeball of camera-type eye | 6.87e-12 | 20 |
optic cup | 6.87e-12 | 20 |
optic vesicle | 6.87e-12 | 20 |
eye primordium | 6.87e-12 | 20 |
face | 7.16e-11 | 22 |
ectodermal placode | 6.69e-08 | 31 |