FFCP PHASE1:Hg19::chr12:56652111..56652183,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:56652111..56652183,-
|short_description=p1@ANKRD52
|description=CAGE_peak_1_at_ANKRD52_5end
|association_with_transcript=0bp_to_ENST00000267116,ENST000004...") |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=283373 | |EntrezGene=283373 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26614 | |HGNC=26614 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NB46,B3KWN0 | |UniProt=Q8NB46,B3KWN0 | ||
|association_with_transcript=0bp_to_ENST00000267116,ENST00000417002,NM_173595,uc001skm.3_5end | |||
|cluster_id=chr12:56652111..56652183,- | |||
|description=CAGE_peak_1_at_ANKRD52_5end | |||
|id=chr12:56652111..56652183,- | |||
|ontology_enrichment_celltype=CL:0000220!1.04e-19!246;CL:0002321!3.69e-19!248;CL:0000222!5.94e-17!119;CL:0000055!1.54e-13!180;CL:0000066!3.31e-12!254;CL:0000213!1.11e-09!57;CL:0000215!1.11e-09!57;CL:1000449!6.46e-09!16;CL:1000497!7.91e-08!18;CL:0002518!7.91e-08!18;CL:0000183!8.61e-08!59;CL:0002681!2.81e-07!13;CL:0002584!2.81e-07!13;CL:0000057!3.89e-07!75;CL:0002078!4.87e-07!44;CL:1000507!8.59e-07!12;CL:1000494!8.59e-07!12;CL:0000359!8.97e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.17e-09;15!CL:1000497;3.55e-08;17!CL:0002518;3.55e-08;17!CL:0002681;9.42e-08;12!CL:0002584;9.42e-08;12!CL:1000507;5.66e-07;10!CL:1000494;5.66e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.04e-19,250;CL:0000222,3.68e-17,121;CL:0000066,3.16e-12,253;CL:0000213,5.68e-10,58;CL:0000215,5.68e-10,58;CL:1000449,2.24e-09,15;CL:1000497,3.58e-08,17;CL:0002518,3.58e-08,17;CL:0002681,1.00e-07,12;CL:0002584,1.00e-07,12;CL:0000057,2.09e-07,76;CL:0002078,2.57e-07,45;CL:1000507,5.82e-07,10;CL:1000494,5.82e-07,10;CL:0000359,8.97e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.11e-13!312;UBERON:0002049!2.04e-12!79;UBERON:0007798!2.04e-12!79;UBERON:0000483!2.68e-12!309;UBERON:0000475!3.40e-12!365;UBERON:0003914!3.78e-11!118;UBERON:0000477!6.94e-11!286;UBERON:0000025!8.78e-11!194;UBERON:0004111!7.22e-10!241;UBERON:0000064!4.07e-09!219;UBERON:0000055!6.08e-09!69;UBERON:0004211!6.46e-09!16;UBERON:0001285!6.46e-09!16;UBERON:0007684!6.46e-09!16;UBERON:0003220!6.46e-09!16;UBERON:0004208!6.46e-09!16;UBERON:0001981!9.17e-09!60;UBERON:0007500!9.17e-09!60;UBERON:0004537!9.17e-09!60;UBERON:0006965!9.17e-09!60;UBERON:0000481!1.34e-08!347;UBERON:0004872!1.58e-08!84;UBERON:0000353!2.83e-08!17;UBERON:0001637!3.24e-08!42;UBERON:0003509!3.24e-08!42;UBERON:0004572!3.24e-08!42;UBERON:0006555!4.84e-08!17;UBERON:0005103!4.84e-08!17;UBERON:0000083!4.84e-08!17;UBERON:0009201!4.84e-08!17;UBERON:0004819!4.84e-08!17;UBERON:0006553!4.84e-08!17;UBERON:0003074!4.84e-08!17;UBERON:0003060!4.84e-08!17;UBERON:0001009!8.68e-08!113;UBERON:0004535!9.22e-08!110;UBERON:0000080!1.01e-07!18;UBERON:0002120!1.01e-07!18;UBERON:0004875!1.01e-07!18;UBERON:0005721!1.01e-07!18;UBERON:0005754!1.01e-07!18;UBERON:0007297!1.01e-07!18;UBERON:0004876!2.01e-07!20;UBERON:0002100!2.59e-07!216;UBERON:0001225!2.81e-07!13;UBERON:0008987!2.81e-07!13;UBERON:0001851!5.70e-07!16;UBERON:0009773!8.59e-07!12;UBERON:0001231!8.59e-07!12;UBERON:0004810!8.59e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.17e-09;15!UBERON:0004819;2.17e-09;15!UBERON:0001285;2.17e-09;15!UBERON:0007684;2.17e-09;15!UBERON:0000353;2.67e-08;15!UBERON:0001225;9.42e-08;12!UBERON:0008987;9.42e-08;12!UBERON:0001851;2.42e-07;15!UBERON:0003914;3.69e-07;74!UBERON:0004211;5.66e-07;10!UBERON:0009773;5.66e-07;10!UBERON:0001231;5.66e-07;10!UBERON:0004810;5.66e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.37e-12,309;UBERON:0002049,4.33e-12,78;UBERON:0007798,4.33e-12,78;UBERON:0000483,1.12e-11,306;UBERON:0003914,3.27e-11,117;UBERON:0000025,7.26e-11,192;UBERON:0004111,1.14e-09,240;UBERON:0004211,2.24e-09,15;UBERON:0009773,2.24e-09,15;UBERON:0001231,2.24e-09,15;UBERON:0001285,2.24e-09,15;UBERON:0007684,2.24e-09,15;UBERON:0004208,2.24e-09,15;UBERON:0000055,1.21e-08,68;UBERON:0007500,1.86e-08,59;UBERON:0001981,1.86e-08,59;UBERON:0004537,1.86e-08,59;UBERON:0006965,1.86e-08,59;UBERON:0006555,2.02e-08,16;UBERON:0004819,2.02e-08,16;UBERON:0000353,2.60e-08,15;UBERON:0004872,3.00e-08,83;UBERON:0001637,3.24e-08,42;UBERON:0003509,3.24e-08,42;UBERON:0004572,3.24e-08,42;UBERON:0002100,4.60e-08,199;UBERON:0001225,1.00e-07,12;UBERON:0008987,1.00e-07,12;UBERON:0001009,1.53e-07,112;UBERON:0004535,1.63e-07,109;UBERON:0001851,2.62e-07,15;UBERON:0007503,5.14e-07,78;UBERON:0004810,5.82e-07,10 | |||
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| ||
|short_description=p1@ANKRD52 | |||
}} | }} |
Latest revision as of 10:31, 19 September 2015
Short description: | p1@ANKRD52 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ANKRD52_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000267116, ENST00000417002, NM_173595, uc001skm.3_5end |
EntrezGene: | ANKRD52 |
HGNC: | 26614 |
UniProt: | Q8NB46B3KWN0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.04e-19 | 250 |
mesodermal cell | 3.68e-17 | 121 |
epithelial cell | 3.16e-12 | 253 |
lining cell | 5.68e-10 | 58 |
barrier cell | 5.68e-10 | 58 |
epithelial cell of nephron | 2.24e-09 | 15 |
kidney cell | 3.58e-08 | 17 |
kidney epithelial cell | 3.58e-08 | 17 |
kidney cortical cell | 1.00e-07 | 12 |
renal cortical epithelial cell | 1.00e-07 | 12 |
fibroblast | 2.09e-07 | 76 |
meso-epithelial cell | 2.57e-07 | 45 |
kidney tubule cell | 5.82e-07 | 10 |
nephron tubule epithelial cell | 5.82e-07 | 10 |
vascular associated smooth muscle cell | 8.97e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.37e-12 | 309 |
vasculature | 4.33e-12 | 78 |
vascular system | 4.33e-12 | 78 |
epithelium | 1.12e-11 | 306 |
epithelial tube | 3.27e-11 | 117 |
tube | 7.26e-11 | 192 |
anatomical conduit | 1.14e-09 | 240 |
nephron epithelium | 2.24e-09 | 15 |
renal tubule | 2.24e-09 | 15 |
nephron tubule | 2.24e-09 | 15 |
nephron | 2.24e-09 | 15 |
uriniferous tubule | 2.24e-09 | 15 |
nephrogenic mesenchyme | 2.24e-09 | 15 |
vessel | 1.21e-08 | 68 |
epithelial tube open at both ends | 1.86e-08 | 59 |
blood vessel | 1.86e-08 | 59 |
blood vasculature | 1.86e-08 | 59 |
vascular cord | 1.86e-08 | 59 |
excretory tube | 2.02e-08 | 16 |
kidney epithelium | 2.02e-08 | 16 |
parenchyma | 2.60e-08 | 15 |
splanchnic layer of lateral plate mesoderm | 3.00e-08 | 83 |
artery | 3.24e-08 | 42 |
arterial blood vessel | 3.24e-08 | 42 |
arterial system | 3.24e-08 | 42 |
trunk | 4.60e-08 | 199 |
cortex of kidney | 1.00e-07 | 12 |
renal parenchyma | 1.00e-07 | 12 |
circulatory system | 1.53e-07 | 112 |
cardiovascular system | 1.63e-07 | 109 |
cortex | 2.62e-07 | 15 |
epithelial vesicle | 5.14e-07 | 78 |
nephron tubule epithelium | 5.82e-07 | 10 |