FFCP PHASE1:Hg19::chrX:123480447..123480464,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000477673,ENST00000491950,ENST00000494073_5end | |association_with_transcript=8bp_to_ENST00000477673,ENST00000491950,ENST00000494073_5end | ||
|cluster_id=chrX:123480447..123480464,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_3_at_SH2D1A_5end | |description=CAGE_peak_3_at_SH2D1A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000084!1.27e-31!25;CL:0000827!1.27e-31!25;CL:0000791!9.64e-28!18;CL:0000789!9.64e-28!18;CL:0002420!9.64e-28!18;CL:0002419!9.64e-28!18;CL:0000790!9.64e-28!18;CL:0000838!3.97e-27!52;CL:0000542!2.14e-26!53;CL:0000051!2.14e-26!53;CL:0000738!2.63e-24!140;CL:0002087!4.10e-23!119;CL:0000988!9.88e-19!182;CL:0002031!2.66e-18!124;CL:0000625!3.08e-18!11;CL:0000037!4.29e-18!172;CL:0000566!4.29e-18!172;CL:0002032!1.89e-14!165;CL:0000837!1.89e-14!165;CL:0000624!7.73e-10!6;CL:0000080!2.38e-09!6 | |ontology_enrichment_celltype=CL:0000084!1.27e-31!25;CL:0000827!1.27e-31!25;CL:0000791!9.64e-28!18;CL:0000789!9.64e-28!18;CL:0002420!9.64e-28!18;CL:0002419!9.64e-28!18;CL:0000790!9.64e-28!18;CL:0000838!3.97e-27!52;CL:0000542!2.14e-26!53;CL:0000051!2.14e-26!53;CL:0000738!2.63e-24!140;CL:0002087!4.10e-23!119;CL:0000988!9.88e-19!182;CL:0002031!2.66e-18!124;CL:0000625!3.08e-18!11;CL:0000037!4.29e-18!172;CL:0000566!4.29e-18!172;CL:0002032!1.89e-14!165;CL:0000837!1.89e-14!165;CL:0000624!7.73e-10!6;CL:0000080!2.38e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.49e-52;25!CL:0000791;1.01e-44;18!CL:0000789;1.01e-44;18!CL:0002419;1.01e-44;18!CL:0000625;5.17e-29;11!CL:0000542;1.40e-18;53!CL:0000624;3.52e-15;6!CL:0000898;1.70e-08;3!CL:0000623;1.96e-08;3!CL:0000767;5.73e-08;3!CL:0000226;6.65e-08;3!CL:0000842;6.65e-08;3 | |ontology_enrichment_celltype_v019=CL:0000084;8.49e-52;25!CL:0000791;1.01e-44;18!CL:0000789;1.01e-44;18!CL:0002419;1.01e-44;18!CL:0000625;5.17e-29;11!CL:0000542;1.40e-18;53!CL:0000624;3.52e-15;6!CL:0000898;1.70e-08;3!CL:0000623;1.96e-08;3!CL:0000767;5.73e-08;3!CL:0000226;6.65e-08;3!CL:0000842;6.65e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000084,8.00e-52,25;CL:0000827,8.00e-52,25;CL:0000791,9.68e-45,18;CL:0000789,9.68e-45,18;CL:0002420,9.68e-45,18;CL:0002419,9.68e-45,18;CL:0000790,9.68e-45,18;CL:0000838,1.84e-33,52;CL:0000542,1.13e-32,53;CL:0000051,1.13e-32,53;CL:0000625,5.04e-29,11;CL:0000738,1.28e-18,136;CL:0002087,2.60e-18,115;CL:0000988,1.13e-15,177;CL:0000624,3.56e-15,6;CL:0000037,4.71e-14,168;CL:0002031,9.29e-14,120;CL:0002032,2.39e-11,161;CL:0000837,2.39e-11,161;CL:0000898,1.79e-08,3;CL:0000623,2.03e-08,3;CL:0000825,2.03e-08,3;CL:0000767,5.59e-08,3;CL:0000226,6.82e-08,3;CL:0000842,6.82e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;1.01e-44;18!CL:0000051;1.40e-18;53 | |ontology_enrichment_development_v019=CL:0000790;1.01e-44;18!CL:0000051;1.40e-18;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.47e-18!15;UBERON:0000179!5.47e-18!15;UBERON:0000463!5.47e-18!15;UBERON:0002390!9.59e-12!102;UBERON:0003061!9.59e-12!102;UBERON:0002193!2.63e-11!112;UBERON:0007023!8.61e-10!115;UBERON:0004177!2.65e-08!7;UBERON:0002370!1.19e-07!4;UBERON:0005058!1.19e-07!4;UBERON:0009113!1.19e-07!4;UBERON:0003295!1.19e-07!4;UBERON:0005562!1.19e-07!4 | |ontology_enrichment_uberon=UBERON:0000178!5.47e-18!15;UBERON:0000179!5.47e-18!15;UBERON:0000463!5.47e-18!15;UBERON:0002390!9.59e-12!102;UBERON:0003061!9.59e-12!102;UBERON:0002193!2.63e-11!112;UBERON:0007023!8.61e-10!115;UBERON:0004177!2.65e-08!7;UBERON:0002370!1.19e-07!4;UBERON:0005058!1.19e-07!4;UBERON:0009113!1.19e-07!4;UBERON:0003295!1.19e-07!4;UBERON:0005562!1.19e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.36e-29;15!UBERON:0000179;6.36e-29;15!UBERON:0000463;6.36e-29;15!UBERON:0002390;1.51e-19;32!UBERON:0002193;4.42e-13;42!UBERON:0002370;4.25e-07;2!UBERON:0005058;4.25e-07;2!UBERON:0009113;4.25e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000178;6.36e-29;15!UBERON:0000179;6.36e-29;15!UBERON:0000463;6.36e-29;15!UBERON:0002390;1.51e-19;32!UBERON:0002193;4.42e-13;42!UBERON:0002370;4.25e-07;2!UBERON:0005058;4.25e-07;2!UBERON:0009113;4.25e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.36e-29,15;UBERON:0000179,6.36e-29,15;UBERON:0000463,6.36e-29,15;UBERON:0002370,1.39e-11,4;UBERON:0005058,1.39e-11,4;UBERON:0009113,1.39e-11,4;UBERON:0003295,1.39e-11,4;UBERON:0005562,1.39e-11,4;UBERON:0004177,1.73e-09,7;UBERON:0005057,1.73e-09,7;UBERON:0002193,1.50e-08,108;UBERON:0002390,3.13e-08,98;UBERON:0003061,3.13e-08,98;UBERON:0003351,1.08e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.0787107813136792,1.96682138424452,12.666370137208,2.16742572642506,0,0,0,27.8881922089086,0.142169232487422,0.587200878669695,0.553995408531877,2.4065333696417,1.30206522429511,0.671746422719773,2.26725566213286,1.28787783817093,0,0,0,0,0.411167888021826,0,0.575384784644301,0,0.236482229888585,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0,0.918251677112708,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,6.72610275577843,0,5.70458333330116,6.6811829667358,8.42966145897988,8.69369776031526,4.23698946623668,3.78758244587787,1.94826728407911,26.6270991955565,9.42738903919479,18.1657793558569,13.2693893244858,16.7799628840634,23.2806232132182,15.9504767465566,18.7918012094377,20.2862160014537,4.30031033169975,6.42097987415311,12.5442628565972,15.8633079776593,10.3469533272519,11.3397057009268,17.2053390573262,14.6540090589084,26.0433381542567,28.5135613334512,9.48623250189969,13.4385941712139,17.4903017173284,19.6525119196534,16.4225599384209,8.46748321543876,13.3720097891754,10.2825326756787,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0.348259474598534,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70757604772815,6.10795356625974,8.40947541952118,6.93052395910641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54889657470352,3.66714141391649,3.30855429190677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,6.5968189200182,3.82318603571188,5.12682468456746,5.00286728461357,2.46817363851717,2.59389324477087,6.48037724685738,3.17250070517708,0,0,0,0,0,25.255354388687,9.2467238182717,0,1.53204296105893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,2.78608460693696,0,0,0,0,0,0,0,0,0,0.796991953004279,2.48655523978033,0,0,0.123084805461069,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,25.5483245489341,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.83309043480088,5.04085918757057,4.81899361891361,5.95205112181096,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,0.442306057399416,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.961086713109252,0,0.828478110694391,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0,0,0,0,11.1992941678761,0,35.1318558508064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,1.69171052363736,0.902410431630081,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0.476128862927481,54.3838620819171,45.9352885789349,0,0.25458863311266,0.202117188958219,0,0,2.82878622661268,0,0,0,0,0,0,0,0.122241444182866,0,0,9.66114209236926,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.164201178899891,0.0787107813136792,1.96682138424452,12.666370137208,2.16742572642506,0,0,0,27.8881922089086,0.142169232487422,0.587200878669695,0.553995408531877,2.4065333696417,1.30206522429511,0.671746422719773,2.26725566213286,1.28787783817093,0,0,0,0,0.411167888021826,0,0.575384784644301,0,0.236482229888585,0.689491361473237,0,0,0.564727018627814,0.272906150057846,0,0.918251677112708,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,6.72610275577843,0,5.70458333330116,6.6811829667358,8.42966145897988,8.69369776031526,4.23698946623668,3.78758244587787,1.94826728407911,26.6270991955565,9.42738903919479,18.1657793558569,13.2693893244858,16.7799628840634,23.2806232132182,15.9504767465566,18.7918012094377,20.2862160014537,4.30031033169975,6.42097987415311,12.5442628565972,15.8633079776593,10.3469533272519,11.3397057009268,17.2053390573262,14.6540090589084,26.0433381542567,28.5135613334512,9.48623250189969,13.4385941712139,17.4903017173284,19.6525119196534,16.4225599384209,8.46748321543876,13.3720097891754,10.2825326756787,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.0654895377488563,0,0,0,0.348259474598534,0,0.476981248610684,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0365774853663,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70757604772815,6.10795356625974,8.40947541952118,6.93052395910641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54889657470352,3.66714141391649,3.30855429190677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,6.5968189200182,3.82318603571188,5.12682468456746,5.00286728461357,2.46817363851717,2.59389324477087,6.48037724685738,3.17250070517708,0,0,0,0,0,25.255354388687,9.2467238182717,0,1.53204296105893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,2.78608460693696,0,0,0,0,0,0,0,0,0,0.796991953004279,2.48655523978033,0,0,0.123084805461069,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,25.5483245489341,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.83309043480088,5.04085918757057,4.81899361891361,5.95205112181096,0.067401132980677,0,0,0,0,0,0,1.20990716048664,0,0.442306057399416,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,1.42939065274673,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,0,0.961086713109252,0,0.828478110694391,1.9846640872478,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0,0,0,0,11.1992941678761,0,35.1318558508064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,1.69171052363736,0.902410431630081,0,0,0,0,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0.213233981900981,0.476128862927481,54.3838620819171,45.9352885789349,0,0.25458863311266,0.202117188958219,0,0,2.82878622661268,0,0,0,0,0,0,0,0.122241444182866,0,0,9.66114209236926,0 | ||
|short_description=p3@SH2D1A | |short_description=p3@SH2D1A | ||
}} | }} |
Latest revision as of 08:03, 19 September 2015
Short description: | p3@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SH2D1A_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 8bp_to_ENST00000477673, ENST00000491950, ENST00000494073_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 8.00e-52 | 25 |
pro-T cell | 8.00e-52 | 25 |
mature alpha-beta T cell | 9.68e-45 | 18 |
alpha-beta T cell | 9.68e-45 | 18 |
immature T cell | 9.68e-45 | 18 |
mature T cell | 9.68e-45 | 18 |
immature alpha-beta T cell | 9.68e-45 | 18 |
lymphoid lineage restricted progenitor cell | 1.84e-33 | 52 |
lymphocyte | 1.13e-32 | 53 |
common lymphoid progenitor | 1.13e-32 | 53 |
CD8-positive, alpha-beta T cell | 5.04e-29 | 11 |
leukocyte | 1.28e-18 | 136 |
nongranular leukocyte | 2.60e-18 | 115 |
hematopoietic cell | 1.13e-15 | 177 |
CD4-positive, alpha-beta T cell | 3.56e-15 | 6 |
hematopoietic stem cell | 4.71e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 9.29e-14 | 120 |
hematopoietic oligopotent progenitor cell | 2.39e-11 | 161 |
hematopoietic multipotent progenitor cell | 2.39e-11 | 161 |
naive T cell | 1.79e-08 | 3 |
natural killer cell | 2.03e-08 | 3 |
pro-NK cell | 2.03e-08 | 3 |
basophil | 5.59e-08 | 3 |
single nucleate cell | 6.82e-08 | 3 |
mononuclear cell | 6.82e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 6.36e-29 | 15 |
haemolymphatic fluid | 6.36e-29 | 15 |
organism substance | 6.36e-29 | 15 |
thymus | 1.39e-11 | 4 |
hemolymphoid system gland | 1.39e-11 | 4 |
thymic region | 1.39e-11 | 4 |
pharyngeal gland | 1.39e-11 | 4 |
thymus primordium | 1.39e-11 | 4 |
hemopoietic organ | 1.73e-09 | 7 |
immune organ | 1.73e-09 | 7 |
hemolymphoid system | 1.50e-08 | 108 |
hematopoietic system | 3.13e-08 | 98 |
blood island | 3.13e-08 | 98 |
pharyngeal epithelium | 1.08e-07 | 6 |