FFCP PHASE1:Hg19::chrX:123480376..123480388,+: Difference between revisions
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(Created page with "{{FFCP
|id=chrX:123480376..123480388,+
|short_description=p4@SH2D1A
|description=CAGE_peak_4_at_SH2D1A_5end
|association_with_transcript=1bp_to_ENST00000360027_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000360027_5end | |||
|cluster_id=chrX:123480376..123480388,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_SH2D1A_5end | |||
|id=chrX:123480376..123480388,+ | |||
|ontology_enrichment_celltype=CL:0000084!3.54e-36!25;CL:0000827!3.54e-36!25;CL:0000791!1.39e-29!18;CL:0000789!1.39e-29!18;CL:0002420!1.39e-29!18;CL:0002419!1.39e-29!18;CL:0000790!1.39e-29!18;CL:0000838!1.33e-25!52;CL:0000542!6.45e-25!53;CL:0000051!6.45e-25!53;CL:0000625!1.23e-19!11;CL:0000738!8.94e-18!140;CL:0002087!4.21e-15!119;CL:0000988!4.63e-13!182;CL:0000037!1.90e-12!172;CL:0000566!1.90e-12!172;CL:0002031!2.12e-11!124;CL:0000624!3.70e-10!6;CL:0002032!6.29e-10!165;CL:0000837!6.29e-10!165;CL:0000080!1.83e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;5.06e-49;25!CL:0000791;2.02e-46;18!CL:0000789;2.02e-46;18!CL:0002419;2.02e-46;18!CL:0000625;2.00e-30;11!CL:0000542;2.85e-17;53!CL:0000624;2.35e-15;6!CL:0000898;6.92e-09;3!CL:0000623;9.66e-09;3!CL:0000226;2.86e-08;3!CL:0000842;2.86e-08;3!CL:0000767;3.46e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,5.26e-49,25;CL:0000827,5.26e-49,25;CL:0000791,2.23e-46,18;CL:0000789,2.23e-46,18;CL:0002420,2.23e-46,18;CL:0002419,2.23e-46,18;CL:0000790,2.23e-46,18;CL:0000838,1.29e-31,52;CL:0000542,7.17e-31,53;CL:0000051,7.17e-31,53;CL:0000625,1.98e-30,11;CL:0000738,3.30e-18,136;CL:0002087,1.87e-16,115;CL:0000988,2.77e-15,177;CL:0000624,2.85e-15,6;CL:0000037,8.93e-14,168;CL:0002031,3.76e-12,120;CL:0002032,5.46e-11,161;CL:0000837,5.46e-11,161;CL:0000898,7.31e-09,3;CL:0000623,1.03e-08,3;CL:0000825,1.03e-08,3;CL:0000767,3.01e-08,3;CL:0000226,3.42e-08,3;CL:0000842,3.42e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.02e-46;18!CL:0000051;2.85e-17;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.26e-22!15;UBERON:0000179!7.26e-22!15;UBERON:0000463!7.26e-22!15;UBERON:0007023!1.21e-13!115;UBERON:0004177!7.52e-09!7;UBERON:0002370!3.95e-08!4;UBERON:0005058!3.95e-08!4;UBERON:0009113!3.95e-08!4;UBERON:0003295!3.95e-08!4;UBERON:0005562!3.95e-08!4;UBERON:0002390!5.08e-07!102;UBERON:0003061!5.08e-07!102;UBERON:0002193!6.97e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.45e-34;15!UBERON:0000179;5.45e-34;15!UBERON:0000463;5.45e-34;15!UBERON:0002390;9.99e-22;32!UBERON:0002193;9.55e-13;42!UBERON:0002370;3.17e-07;2!UBERON:0005058;3.17e-07;2!UBERON:0009113;3.17e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.33e-34,15;UBERON:0000179,5.33e-34,15;UBERON:0000463,5.33e-34,15;UBERON:0002370,4.85e-12,4;UBERON:0005058,4.85e-12,4;UBERON:0009113,4.85e-12,4;UBERON:0003295,4.85e-12,4;UBERON:0005562,4.85e-12,4;UBERON:0004177,7.04e-10,7;UBERON:0005057,7.04e-10,7;UBERON:0002390,1.61e-08,98;UBERON:0003061,1.61e-08,98;UBERON:0002193,5.14e-08,108;UBERON:0003351,5.37e-08,6;UBERON:0001042,9.03e-07,10;UBERON:0009145,9.03e-07,10;UBERON:0000974,9.86e-07,10 | |||
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| ||
|short_description=p4@SH2D1A | |||
}} | }} |
Latest revision as of 08:02, 19 September 2015
Short description: | p4@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SH2D1A_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 1bp_to_ENST00000360027_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 5.26e-49 | 25 |
pro-T cell | 5.26e-49 | 25 |
mature alpha-beta T cell | 2.23e-46 | 18 |
alpha-beta T cell | 2.23e-46 | 18 |
immature T cell | 2.23e-46 | 18 |
mature T cell | 2.23e-46 | 18 |
immature alpha-beta T cell | 2.23e-46 | 18 |
lymphoid lineage restricted progenitor cell | 1.29e-31 | 52 |
lymphocyte | 7.17e-31 | 53 |
common lymphoid progenitor | 7.17e-31 | 53 |
CD8-positive, alpha-beta T cell | 1.98e-30 | 11 |
leukocyte | 3.30e-18 | 136 |
nongranular leukocyte | 1.87e-16 | 115 |
hematopoietic cell | 2.77e-15 | 177 |
CD4-positive, alpha-beta T cell | 2.85e-15 | 6 |
hematopoietic stem cell | 8.93e-14 | 168 |
hematopoietic lineage restricted progenitor cell | 3.76e-12 | 120 |
hematopoietic oligopotent progenitor cell | 5.46e-11 | 161 |
hematopoietic multipotent progenitor cell | 5.46e-11 | 161 |
naive T cell | 7.31e-09 | 3 |
natural killer cell | 1.03e-08 | 3 |
pro-NK cell | 1.03e-08 | 3 |
basophil | 3.01e-08 | 3 |
single nucleate cell | 3.42e-08 | 3 |
mononuclear cell | 3.42e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.33e-34 | 15 |
haemolymphatic fluid | 5.33e-34 | 15 |
organism substance | 5.33e-34 | 15 |
thymus | 4.85e-12 | 4 |
hemolymphoid system gland | 4.85e-12 | 4 |
thymic region | 4.85e-12 | 4 |
pharyngeal gland | 4.85e-12 | 4 |
thymus primordium | 4.85e-12 | 4 |
hemopoietic organ | 7.04e-10 | 7 |
immune organ | 7.04e-10 | 7 |
hematopoietic system | 1.61e-08 | 98 |
blood island | 1.61e-08 | 98 |
hemolymphoid system | 5.14e-08 | 108 |
pharyngeal epithelium | 5.37e-08 | 6 |
chordate pharynx | 9.03e-07 | 10 |
pharyngeal region of foregut | 9.03e-07 | 10 |
neck | 9.86e-07 | 10 |