FFCP PHASE1:Hg19::chrX:123480214..123480227,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4068 | |EntrezGene=4068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10820 | |HGNC=10820 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010nqx.2_5end | |association_with_transcript=0bp_to_uc010nqx.2_5end | ||
|cluster_id=chrX:123480214..123480227,+ | |||
|coexpression_cluster_id=C386 | |||
|description=CAGE_peak_6_at_SH2D1A_5end | |description=CAGE_peak_6_at_SH2D1A_5end | ||
|id=chrX:123480214..123480227,+ | |id=chrX:123480214..123480227,+ | ||
|ontology_enrichment_celltype=CL:0000084!2.12e-18!25;CL:0000827!2.12e-18!25;CL:0000838!3.70e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000080!8.38e-14!6;CL:0000988!1.86e-11!182;CL:0000037!5.98e-09!172;CL:0000566!5.98e-09!172;CL:0002087!3.93e-08!119;CL:0000738!2.27e-07!140;CL:0000623!2.42e-07!3;CL:0000825!2.42e-07!3 | |ontology_enrichment_celltype=CL:0000084!2.12e-18!25;CL:0000827!2.12e-18!25;CL:0000838!3.70e-18!52;CL:0000542!9.40e-18!53;CL:0000051!9.40e-18!53;CL:0000080!8.38e-14!6;CL:0000988!1.86e-11!182;CL:0000037!5.98e-09!172;CL:0000566!5.98e-09!172;CL:0002087!3.93e-08!119;CL:0000738!2.27e-07!140;CL:0000623!2.42e-07!3;CL:0000825!2.42e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002127;1.84e-14;1!CL:0000911;1.84e-14;1!CL:0000814;1.84e-14;1!CL:0000084;2.15e-13;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,2.11e-14,1;CL:0000914,2.11e-14,1;CL:0000911,2.11e-14,1;CL:0000814,2.11e-14,1;CL:0002042,2.11e-14,1;CL:0002039,2.11e-14,1;CL:0002040,2.11e-14,1;CL:0002041,2.11e-14,1;CL:0000084,1.96e-13,25;CL:0000827,1.96e-13,25;CL:0000988,2.29e-09,177;CL:0000838,5.50e-09,52;CL:0000542,8.25e-09,53;CL:0000051,8.25e-09,53;CL:0000893,7.52e-08,2;CL:0002489,7.52e-08,2;CL:0000809,7.52e-08,2;CL:0000808,7.52e-08,2;CL:0000894,7.52e-08,2;CL:0000806,7.52e-08,2;CL:0000807,7.52e-08,2;CL:0000805,7.52e-08,2;CL:0002425,7.52e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002425;7.03e-08;2 | |||
|ontology_enrichment_disease=DOID:2531!4.89e-12!51;DOID:0060083!4.89e-12!51;DOID:0060058!3.53e-08!10;DOID:1240!2.65e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:0060060;1.84e-14;1!DOID:4960;1.84e-14;1!DOID:0060061;1.84e-14;1!DOID:0070004;1.84e-14;1!DOID:8691;1.84e-14;1!DOID:2531;2.11e-14;51!DOID:0060083;2.11e-14;51!DOID:1240;1.29e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.11e-20,51;DOID:0060083,3.11e-20,51;DOID:0060060,1.07e-14,1;DOID:0060061,1.07e-14,1;DOID:8691,1.07e-14,1;DOID:4960,1.41e-14,1;DOID:0070004,1.41e-14,1;DOID:1240,4.01e-12,39;DOID:0050686,7.37e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0002370!3.63e-12!4;UBERON:0005058!3.63e-12!4;UBERON:0009113!3.63e-12!4;UBERON:0003295!3.63e-12!4;UBERON:0005562!3.63e-12!4;UBERON:0004177!1.15e-11!7;UBERON:0000974!2.46e-08!10;UBERON:0000178!2.92e-08!15;UBERON:0000179!2.92e-08!15;UBERON:0000463!2.92e-08!15;UBERON:0003351!2.96e-08!6;UBERON:0001042!3.81e-08!10;UBERON:0009145!3.81e-08!10;UBERON:0006562!2.07e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.08e-27;2!UBERON:0005058;4.08e-27;2!UBERON:0009113;4.08e-27;2!UBERON:0002390;9.02e-13;32!UBERON:0002331;1.65e-12;10!UBERON:0004177;1.85e-11;5!UBERON:0005057;1.85e-11;5!UBERON:0000178;1.58e-08;15!UBERON:0000179;1.58e-08;15!UBERON:0000463;1.58e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.59e-30,4;UBERON:0005058,8.59e-30,4;UBERON:0009113,8.59e-30,4;UBERON:0003295,8.59e-30,4;UBERON:0005562,8.59e-30,4;UBERON:0003351,4.11e-20,6;UBERON:0004177,2.44e-17,7;UBERON:0005057,2.44e-17,7;UBERON:0002331,1.75e-12,10;UBERON:0000358,1.75e-12,10;UBERON:0000307,1.75e-12,10;UBERON:0000091,1.75e-12,10;UBERON:0000087,1.75e-12,10;UBERON:0007010,1.75e-12,10;UBERON:0007806,1.75e-12,10;UBERON:0008780,1.75e-12,10;UBERON:0005728,1.75e-12,10;UBERON:0000974,2.49e-12,10;UBERON:0003408,2.49e-12,10;UBERON:0001042,2.49e-12,10;UBERON:0009145,2.49e-12,10;UBERON:0006562,2.90e-11,11;UBERON:0009722,2.90e-11,11;UBERON:0007690,2.90e-11,11;UBERON:0000178,1.64e-08,15;UBERON:0000179,1.64e-08,15;UBERON:0000463,1.64e-08,15;UBERON:0008814,4.29e-07,18;UBERON:0001557,9.54e-07,19 | |||
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|short_description=p6@SH2D1A | |short_description=p6@SH2D1A | ||
}} | }} |
Latest revision as of 08:02, 19 September 2015
Short description: | p6@SH2D1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SH2D1A_5end |
Coexpression cluster: | C386_chronic_acute_Hodgkin_NK_thymus_liver_blood |
Association with transcript: | 0bp_to_uc010nqx.2_5end |
EntrezGene: | SH2D1A |
HGNC: | 10820 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 2.11e-14 | 1 |
immature NK T cell | 2.11e-14 | 1 |
effector T cell | 2.11e-14 | 1 |
mature NK T cell | 2.11e-14 | 1 |
immature NK T cell stage IV | 2.11e-14 | 1 |
immature NK T cell stage I | 2.11e-14 | 1 |
immature NK T cell stage II | 2.11e-14 | 1 |
immature NK T cell stage III | 2.11e-14 | 1 |
T cell | 1.96e-13 | 25 |
pro-T cell | 1.96e-13 | 25 |
hematopoietic cell | 2.29e-09 | 177 |
lymphoid lineage restricted progenitor cell | 5.50e-09 | 52 |
lymphocyte | 8.25e-09 | 53 |
common lymphoid progenitor | 8.25e-09 | 53 |
thymocyte | 7.52e-08 | 2 |
double negative thymocyte | 7.52e-08 | 2 |
double-positive, alpha-beta thymocyte | 7.52e-08 | 2 |
DN4 thymocyte | 7.52e-08 | 2 |
DN1 thymic pro-T cell | 7.52e-08 | 2 |
DN2 thymocyte | 7.52e-08 | 2 |
DN3 thymocyte | 7.52e-08 | 2 |
immature single positive thymocyte | 7.52e-08 | 2 |
early T lineage precursor | 7.52e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.59e-30 | 4 |
hemolymphoid system gland | 8.59e-30 | 4 |
thymic region | 8.59e-30 | 4 |
pharyngeal gland | 8.59e-30 | 4 |
thymus primordium | 8.59e-30 | 4 |
pharyngeal epithelium | 4.11e-20 | 6 |
hemopoietic organ | 2.44e-17 | 7 |
immune organ | 2.44e-17 | 7 |
umbilical cord | 1.75e-12 | 10 |
blastocyst | 1.75e-12 | 10 |
blastula | 1.75e-12 | 10 |
bilaminar disc | 1.75e-12 | 10 |
inner cell mass | 1.75e-12 | 10 |
cleaving embryo | 1.75e-12 | 10 |
connecting stalk | 1.75e-12 | 10 |
inner cell mass derived epiblast | 1.75e-12 | 10 |
extraembryonic mesoderm | 1.75e-12 | 10 |
neck | 2.49e-12 | 10 |
gland of gut | 2.49e-12 | 10 |
chordate pharynx | 2.49e-12 | 10 |
pharyngeal region of foregut | 2.49e-12 | 10 |
pharynx | 2.90e-11 | 11 |
entire pharyngeal arch endoderm | 2.90e-11 | 11 |
early pharyngeal endoderm | 2.90e-11 | 11 |
blood | 1.64e-08 | 15 |
haemolymphatic fluid | 1.64e-08 | 15 |
organism substance | 1.64e-08 | 15 |
pharyngeal arch system | 4.29e-07 | 18 |
upper respiratory tract | 9.54e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.11e-20 | 51 |
immune system cancer | 3.11e-20 | 51 |
non-Hodgkin lymphoma | 1.07e-14 | 1 |
cutaneous T cell lymphoma | 1.07e-14 | 1 |
mycosis fungoides | 1.07e-14 | 1 |
bone marrow cancer | 1.41e-14 | 1 |
myeloma | 1.41e-14 | 1 |
leukemia | 4.01e-12 | 39 |
organ system cancer | 7.37e-07 | 137 |